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Functions1,294 in github.com/broadinstitute/gnomad-browser

⨍ Functions 1,294◇ Types & classes 131
↓ 1 callersFunctionextractBucketName
(gcsPath: string)
graphql-api/src/queries/helpers/json-cache.ts:107
↓ 1 callersFunctionextractGcsPath
(gcsUrl: string)
graphql-api/src/queries/helpers/json-cache.ts:117
↓ 1 callersFunctionextract_missingness
(dataset)
data-pipeline/src/data_pipeline/pipelines/check_missingness.py:24
↓ 1 callersFunctionfetchAllShortTandemRepeats
(esClient: any, datasetId: any)
graphql-api/src/queries/short-tandem-repeat-queries.ts:23
↓ 1 callersFunctionfetchCacheValue
()
graphql-api/src/cache.ts:20
↓ 1 callersFunctionfetchClinvarVariantByClinvarVariationId
( esClient: any, referenceGenome: any, clinvarVariationID: any )
graphql-api/src/queries/clinvar-variant-queries.ts:108
↓ 1 callersFunctionfetchClinvarVariantById
( esClient: any, referenceGenome: any, variantId: any )
graphql-api/src/queries/clinvar-variant-queries.ts:80
↓ 1 callersFunctionfetchClinvarVariantsByRegion
( esClient: any, referenceGenome: any, region: any )
graphql-api/src/queries/clinvar-variant-queries.ts:223
↓ 1 callersFunctionfetchCopyNumberVariantById
( esClient: any, datasetId: CnvDatasetId, variantId: string )
graphql-api/src/queries/copy-number-variant-queries.ts:29
↓ 1 callersFunctionfetchCopyNumberVariantsByGene
( esClient: any, datasetId: CnvDatasetId, gene: GeneQueryParams )
graphql-api/src/queries/copy-number-variant-queries.ts:79
↓ 1 callersFunctionfetchCopyNumberVariantsByRegion
( esClient: any, datasetId: CnvDatasetId, region: RegionQueryParams )
graphql-api/src/queries/copy-number-variant-queries.ts:117
↓ 1 callersFunctionfetchExomeCoverageForRegion
(esClient: any, datasetId: any, region: any)
graphql-api/src/queries/coverage-queries.ts:105
↓ 1 callersFunctionfetchGeneBySymbol
(esClient: any, geneSymbol: any, referenceGenome: any)
graphql-api/src/queries/gene-queries.ts:32
↓ 1 callersFunctionfetchGenesByRegion
(esClient: any, region: any)
graphql-api/src/queries/gene-queries.ts:54
↓ 1 callersFunctionfetchGenesMatchingText
(esClient: any, query: any, referenceGenome: any)
graphql-api/src/queries/gene-queries.ts:100
↓ 1 callersFunctionfetchGenomeCoverageForRegion
(esClient: any, datasetId: any, region: any)
graphql-api/src/queries/coverage-queries.ts:128
↓ 1 callersFunctionfetchLiftoverVariantsBySource
( esClient: any, variantId: any, referenceGenome: any )
graphql-api/src/queries/liftover-queries.ts:5
↓ 1 callersFunctionfetchLiftoverVariantsByTarget
( esClient: any, variantId: any, referenceGenome: any )
graphql-api/src/queries/liftover-queries.ts:31
↓ 1 callersFunctionfetchMitochondrialGenomeCoverageForRegion
( esClient: any, datasetId: any, region: any )
graphql-api/src/queries/mitochondrial-coverage-queries.ts:120
↓ 1 callersFunctionfetchMitochondrialGenomeCoverageForTranscript
( esClient: any, datasetId: any, transcript: any )
graphql-api/src/queries/mitochondrial-coverage-queries.ts:157
↓ 1 callersFunctionfetchMitochondrialVariantById
( esClient: any, datasetId: DatasetId, variantIdOrRsid: any )
graphql-api/src/queries/mitochondrial-variant-queries.ts:29
↓ 1 callersFunctionfetchMitochondrialVariantsByGene
(esClient: any, gene: any)
graphql-api/src/queries/mitochondrial-variant-datasets/gnomad-v3-mitochondrial-variant-queries.ts:100
↓ 1 callersFunctionfetchMitochondrialVariantsByRegion
( esClient: any, datasetId: DatasetId, region: any )
graphql-api/src/queries/mitochondrial-variant-queries.ts:68
↓ 1 callersFunctionfetchMitochondrialVariantsByTranscript
( esClient: any, datasetId: any, transcript: any )
graphql-api/src/queries/mitochondrial-variant-queries.ts:90
↓ 1 callersFunctionfetchMultiNuceotideVariantById
( esClient: any, datasetId: DatasetId, variantId: any )
graphql-api/src/queries/multi-nucleotide-variant-queries.ts:7
↓ 1 callersFunctionfetchNccConstraintRegionById
(esClient: any, nccId: any)
graphql-api/src/queries/genomic-constraint-queries.ts:1
↓ 1 callersFunctionfetchNccConstraintsByRegion
(esClient: any, region: any)
graphql-api/src/queries/genomic-constraint-queries.ts:16
↓ 1 callersFunctionfetchNumReads
({ datasetId, shortTandemRepeatId, filter }: any)
browser/src/ShortTandemRepeatPage/ShortTandemRepeatReads.tsx:204
↓ 1 callersFunctionfetchReads
({ datasetId, shortTandemRepeatId, filter, limit, offset }: any)
browser/src/ShortTandemRepeatPage/ShortTandemRepeatReads.tsx:229
↓ 1 callersFunctionfetchShortTandemRepeatById
( esClient: any, datasetId: any, shortTandemRepeatId: any )
graphql-api/src/queries/short-tandem-repeat-queries.ts:49
↓ 1 callersFunctionfetchShortTandemRepeatsByGene
( esClient: any, datasetId: any, ensemblGeneId: any )
graphql-api/src/queries/short-tandem-repeat-queries.ts:76
↓ 1 callersFunctionfetchShortTandemRepeatsByRegion
( esClient: any, datasetId: any, region: any )
graphql-api/src/queries/short-tandem-repeat-queries.ts:112
↓ 1 callersFunctionfetchTranscriptById
(es: any, transcriptId: any, referenceGenome: any)
graphql-api/src/queries/transcript-queries.ts:8
↓ 1 callersFunctionfetchVariantCooccurrence
(es: any, dataset: any, variantIds: any)
graphql-api/src/queries/variant-cooccurrence-queries.ts:231
↓ 1 callersFunctionfetchVariantSearchResults
(datasetId: any, query: any)
browser/src/search.ts:250
↓ 1 callersFunctionfetchVariantsByGene
(esClient: any, gene: any)
graphql-api/src/queries/variant-datasets/exac-variant-queries.ts:138
↓ 1 callersFunctionfetchVariantsByRegion
(esClient: any, datasetId: DatasetId, region: any)
graphql-api/src/queries/variant-queries.ts:136
↓ 1 callersFunctionfetchVariantsByTranscript
(esClient: any, transcript: any)
graphql-api/src/queries/variant-datasets/exac-variant-queries.ts:285
↓ 1 callersFunctionfetch_object_metadata
(url)
development/scripts/get_object_metadata.py:23
↓ 1 callersFunctionfetch_object_metadata_from_bucket
(bucket_prefix)
development/scripts/get_object_metadata.py:48
↓ 1 callersFunctionfileExists
(path: string)
graphql-api/src/queries/helpers/json-cache.ts:60
↓ 1 callersFunctionfileExistsGcs
(path: string, bucket: Bucket)
graphql-api/src/queries/helpers/json-cache.ts:100
↓ 1 callersFunctionfilterDescription
(filter: string)
browser/src/CopyNumberVariantPage/CopyNumberVariantAttributeList.tsx:22
↓ 1 callersFunctionfilterDescription
(filter: string)
browser/src/StructuralVariantPage/StructuralVariantAttributeList.tsx:88
↓ 1 callersFunctionfilterIndexStats
(indexStatsPromise: PromiseSettledResult<any>)
graphql-api/src/esPoll.ts:23
↓ 1 callersFunctionfilterLabel
(filter: string)
browser/src/CopyNumberVariantPage/CopyNumberVariantAttributeList.tsx:19
↓ 1 callersFunctionfilterLabel
(filter: string)
browser/src/StructuralVariantPage/StructuralVariantAttributeList.tsx:85
↓ 1 callersFunctionfilterMitochondrialVariants
(variants: any, filter: any, selectedColumns: any)
browser/src/MitochondrialVariantList/filterMitochondrialVariants.ts:3
↓ 1 callersFunctionfilterNodeStats
(nodeStatsPromise: PromiseSettledResult<any>)
graphql-api/src/esPoll.ts:46
↓ 1 callersFunctionfilterSection
(idString: string)
browser/src/DataPage/TableOfContents.tsx:76
↓ 1 callersFunctionfilterVariants
(variants: Variant[], filter: VariantFilterState, selectedColumns: any)
browser/src/VariantList/filterVariants.ts:53
↓ 1 callersFunctionfilter_vcf_header
Filter a VCF header to include only the format line and contigs 1-22, X, Y, and M.
data-pipeline/caids/get_caids.py:28
↓ 1 callersFunctionfindAncestries
( target: PopulationId, candidates: Population[] )
browser/src/VariantList/mergeExomeAndGenomeData.ts:17
↓ 1 callersFunctionfind_mapping_elements_by_name
(trait_element, submission_element, trait_mapping_list_element)
data-pipeline/src/data_pipeline/datasets/clinvar.py:65
↓ 1 callersFunctionfind_mapping_elements_by_preferred_name
(trait_element, submission_element, trait_mapping_list_element)
data-pipeline/src/data_pipeline/datasets/clinvar.py:54
↓ 1 callersFunctionfind_mapping_elements_by_xref
(trait_element, submission_element, trait_mapping_list_element)
data-pipeline/src/data_pipeline/datasets/clinvar.py:41
↓ 1 callersFunctionfix_haplotype_counts
(genotype_counts, haplotype_counts)
data-pipeline/src/data_pipeline/datasets/gnomad_v2/gnomad_v2_variant_cooccurrence.py:6
↓ 1 callersFunctionforAllDatasetsExcept
( datasetIdsToExclude: DatasetId[], contextDescription: string, tests: (datasetId: DatasetId) => void )
tests/__helpers__/datasets.tsx:32
↓ 1 callersFunctionformatErrorAndSetNocache
( error: any, request: any, graphqlRequestParams: any, response: any )
graphql-api/src/graphql/graphql-api.ts:55
↓ 1 callersFunctionformatTooltip
(binIndex: any)
browser/src/MitochondrialVariantPage/MitochondrialVariantSiteQualityMetrics.tsx:100
↓ 1 callersFunctionformat_tissue_name
(tissue_name)
data-pipeline/src/data_pipeline/data_types/gtex_tissue_expression.py:6
↓ 1 callersFunctionfreq_index_key
(subset=None, pop=None, sex=None, raw=False)
data-pipeline/src/data_pipeline/datasets/gnomad_v3/gnomad_v3_variants.py:12
↓ 1 callersFunctionfreq_index_key
(subset=None, pop=None, sex=None, raw=False)
data-pipeline/src/data_pipeline/datasets/gnomad_v4/gnomad_v4_variants.py:12
↓ 1 callersFunctiongenerateLocationId
(location: UnhashedSequenceLocation)
graphql-api/src/graphql/resolvers/va.ts:137
↓ 1 callersFunctiongenerateSequenceId
(sequence: string)
graphql-api/src/graphql/resolvers/va.ts:143
↓ 1 callersFunctiongenesHaveExomeCoverage
(datsetId: DatasetId)
dataset-metadata/metadata.ts:1053
↓ 1 callersFunctiongenesHaveGenomeCoverage
(datsetId: DatasetId)
dataset-metadata/metadata.ts:1056
↓ 1 callersFunctiongetAllPopulationColumns
(columns: { label: string }[])
browser/src/VariantList/ExportVariantsButton.spec.tsx:33
↓ 1 callersFunctiongetBrowserConfig
(datasetId: DatasetId, locus: string)
browser/src/ReadData/ReadData.tsx:33
↓ 1 callersFunctiongetColumnsForContext
(context: Context)
browser/src/StructuralVariantList/structuralVariantTableColumns.tsx:190
↓ 1 callersFunctiongetColumnsForContext
(context: any)
browser/src/VariantList/variantTableColumns.tsx:404
↓ 1 callersFunctiongetColumnsForContext
(context: Context)
browser/src/CopyNumberVariantList/copyNumberVariantTableColumns.tsx:140
↓ 1 callersFunctiongetColumnsForContext
(context: any)
browser/src/MitochondrialVariantList/mitochondrialVariantTableColumns.tsx:291
↓ 1 callersFunctiongetConsequenceColor
(consequenceTerm: any)
browser/src/VariantList/variantTableColumns.tsx:27
↓ 1 callersFunctiongetConsequenceColor
(consequenceTerm: any)
browser/src/MitochondrialVariantList/mitochondrialVariantTableColumns.tsx:25
↓ 1 callersFunctiongetConsequenceName
(consequenceTerm: any)
browser/src/VariantList/variantTableColumns.tsx:36
↓ 1 callersFunctiongetConsequenceName
(consequenceTerm: any)
browser/src/MitochondrialVariantList/mitochondrialVariantTableColumns.tsx:34
↓ 1 callersFunctiongetContextType
(context: any)
browser/src/VariantList/VariantTableConfigurationModal.tsx:57
↓ 1 callersFunctiongetContextType
(context: any)
browser/src/VariantList/variantTableColumns.tsx:394
↓ 1 callersFunctiongetContextType
(context: any)
browser/src/MitochondrialVariantList/mitochondrialVariantTableColumns.tsx:281
↓ 1 callersFunctiongetCooccurrenceDescription
(prediction: Prediction, selectedPopulation = 'All')
browser/src/VariantCooccurrencePage/VariantCooccurrencePage.tsx:156
↓ 1 callersFunctiongetDefaultSelectedSequencingType
(variant: any)
browser/src/VariantPage/VariantSiteQualityMetrics.tsx:977
↓ 1 callersFunctiongetDefaultSelectedSequencingType
(variant: any)
browser/src/VariantPage/VariantGenotypeQualityMetrics.tsx:57
↓ 1 callersFunctiongetDefaultSelectedSequencingType
(variant: any)
browser/src/VariantPage/GnomadAgeDistribution.tsx:118
↓ 1 callersFunctiongetGenotypeDistributionPlotAxisLabels
( shortTandemRepeatOrAdjacentRepeat: ShortTandemRepeat | ShortTandemRepeatAdjacentRepeat, { selectedRepeat
browser/src/ShortTandemRepeatPage/shortTandemRepeatHelpers.ts:148
↓ 1 callersFunctiongetLocusWindow
({ chrom, pos }: any, range = 20)
browser/src/VariantPage/VariantRelatedVariants.tsx:68
↓ 1 callersFunctiongetLofteeFlagsForContext
(context: any)
graphql-api/src/queries/variant-datasets/shared/flags.ts:117
↓ 1 callersFunctiongetLofteeFlagsForGeneContext
(variant: any, geneId: any)
graphql-api/src/queries/variant-datasets/shared/flags.ts:12
↓ 1 callersFunctiongetLofteeFlagsForTranscriptContext
(variant: any, transcriptId: any)
graphql-api/src/queries/variant-datasets/shared/flags.ts:88
↓ 1 callersFunctiongetMaxRowSum
(dataRows: { [x: string]: number }[], dataCategories: string[])
browser/src/StatsPage/StackedBarGraph.tsx:109
↓ 1 callersFunctiongetPreferredTranscript
(gene: any)
browser/src/GenePage/preferredTranscript.tsx:5
↓ 1 callersFunctiongetSelectedAlleleSizeDistribution
( shortTandemRepeatOrAdjacentRepeat: ShortTandemRepeat | ShortTandemRepeatAdjacentRepeat, { selectedPo
browser/src/ShortTandemRepeatPage/shortTandemRepeatHelpers.ts:65
↓ 1 callersFunctiongetSiteQualityMetricDescription
(datasetId: any)
browser/src/VariantPage/VariantSiteQualityMetrics.tsx:53
↓ 1 callersFunctiongetVariantSearchTerms
(variant: any)
browser/src/StructuralVariantList/filterStructuralVariants.ts:24
↓ 1 callersFunctiongetVariantSearchTerms
(variant: Variant)
browser/src/VariantList/filterVariants.ts:29
↓ 1 callersFunctiongetVariantSearchTerms
(variant: any)
browser/src/CopyNumberVariantList/filterCopyNumberVariants.ts:16
↓ 1 callersFunctiongetVariantSearchTerms
(variant: any)
browser/src/MitochondrialVariantList/filterMitochondrialVariants.ts:25
↓ 1 callersFunctiongetVisibleRegions
(regions: any, clipRegion: any)
browser/src/RegionViewer/getVisibleRegions.ts:1
↓ 1 callersFunctionget_caids
Download ClinGen Canonical Allele IDs for variants in the specified VCF. TSV files containing CAIDs will be written to the directory/prefix
data-pipeline/caids/get_caids.py:105
↓ 1 callersFunctionget_exac_variants
Get locus/alleles for all ExAC variants.
data-pipeline/caids/export_vcfs.py:41
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