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Functions1,294 in github.com/broadinstitute/gnomad-browser

⨍ Functions 1,294◇ Types & classes 131
↓ 5 callersFunctioncatchNotFound
(err: any)
graphql-api/src/elasticsearch.ts:41
↓ 5 callersFunctiondeployments_directory
()
deploy/deployctl/subcommands/browser_deployments.py:126
↓ 5 callersFunctionextendRegions
(amount: any, regions: any)
graphql-api/src/queries/helpers/region-helpers.ts:1
↓ 5 callersFunctionfetchStructuralVariantsByGene
( esClient: any, datasetId: SvDatasetId, gene: GeneQueryParams )
graphql-api/src/queries/structural-variant-queries.ts:123
↓ 5 callersMethodhasReadData
(exomeOrGenome: any)
browser/src/ReadData/ReadData.tsx:261
↓ 5 callersFunctionnumericCompareFunction
(key: Key)
browser/src/useTableSort.tsx:91
↓ 5 callersFunctionpopulationName
(populationId: string)
dataset-metadata/gnomadPopulations.ts:55
↓ 5 callersFunctionresolveVAExome
(obj: any, args: any, ctx: any)
graphql-api/src/graphql/resolvers/va.ts:427
↓ 5 callersFunctionresolveVAGenome
(obj: any, args: any, ctx: any)
graphql-api/src/graphql/resolvers/va.ts:430
↓ 5 callersFunctionscheduleElasticsearchRequest
(fn: any)
graphql-api/src/elasticsearch.ts:48
↓ 5 callersFunctiontotalRegionSize
(regions: any)
graphql-api/src/queries/helpers/region-helpers.ts:48
↓ 4 callersFunctionNcbiReference
(variantRsids: string[])
browser/src/VariantPage/ReferenceList.tsx:20
↓ 4 callersFunctioncapitalize
(str: string)
graphql-api/src/graphql/resolvers/va.ts:147
↓ 4 callersMethodexists
(key: string)
graphql-api/src/queries/helpers/json-cache.ts:189
↓ 4 callersFunctionextractPlotFragment
(tree: DocumentFragment)
browser/src/ClinvarVariantsTrack/ClinvarAllVariantsPlot.spec.tsx:9
↓ 4 callersFunctionfetchMatchingVariants
(esClient: any, datasetId: DatasetId, search: any)
graphql-api/src/queries/variant-queries.ts:156
↓ 4 callersMethodfindItem
(itemId: any)
browser/src/DatasetSelector.tsx:319
↓ 4 callersFunctiongetConsequenceDescription
(contextType: any)
browser/src/VariantList/variantTableColumns.tsx:39
↓ 4 callersFunctiongetConsequenceDescription
(context: any)
browser/src/MitochondrialVariantList/mitochondrialVariantTableColumns.tsx:37
↓ 4 callersFunctiongetFirstIndexFromSearchText
( searchFilter: VariantFilterState, variantSearched: Variant[], variantsTableColumns: any, variantWind
browser/src/VariantList/Variants.tsx:62
↓ 4 callersFunctiongetPopulationsInDataset
(datasetId: DatasetId)
dataset-metadata/gnomadPopulations.ts:93
↓ 4 callersMethodgetPreference
(key: any)
browser/src/userPreferences.ts:16
↓ 4 callersFunctiongetValueGivenProperty
( popId: PopulationId, variant: VariantTableVariant, property: Property )
browser/src/VariantList/ExportVariantsButton.tsx:24
↓ 4 callersFunctionget_current_browser_deployment
()
deploy/deployctl/subcommands/ingress_production.py:34
↓ 4 callersFunctionhasMitochondrialGenomeCoverage
(datasetId: DatasetId)
dataset-metadata/metadata.ts:1122
↓ 4 callersFunctionhasMitochondrialVariants
(datasetId: DatasetId)
dataset-metadata/metadata.ts:1125
↓ 4 callersFunctionhasPositiveAC
(variant: any, subset: string)
graphql-api/src/queries/variant-datasets/gnomad-v4-variant-queries.ts:421
↓ 4 callersFunctionisLiftoverSource
(datasetId: DatasetId)
dataset-metadata/metadata.ts:1079
↓ 4 callersFunctionmakeCompareFunction
(key: any, fn: any)
browser/src/VariantList/sortUtilities.ts:6
↓ 4 callersFunctionmanifests_directory
()
deploy/deployctl/subcommands/ingress_production.py:30
↓ 4 callersFunctionplotLayoutMatches
(expected: PlotLayoutElement[], plotBody: Element | null)
browser/src/ClinvarVariantsTrack/ClinvarAllVariantsPlot.spec.tsx:17
↓ 4 callersFunctionregionViewerScale
(domainRegions: any, range: any)
browser/src/GenePage/TranscriptsTissueExpressionPlot.tsx:35
↓ 4 callersMethodrender
()
browser/src/RegionPage/EditRegion.tsx:58
↓ 4 callersMethodrender
()
browser/src/ReadData/ReadData.tsx:378
↓ 4 callersFunctionrenderAlleleCountCell
(row: any, key: any)
browser/src/tableCells.tsx:22
↓ 4 callersMethodrenderColumnHeader
({ key, label, tooltip = null, props = {} }: any)
browser/src/CopyNumberVariantPage/CNVPopulationsTable.tsx:135
↓ 4 callersFunctionrenderDownloadOptions
(elements: any)
browser/src/DataPage/downloadsPageStyles.tsx:109
↓ 4 callersFunctionrenderNumber
(number: number | null | undefined)
browser/src/RegionalMissenseConstraintTrack.tsx:104
↓ 4 callersMethodrun
(self, force=False)
data-pipeline/src/data_pipeline/pipeline.py:172
↓ 4 callersFunctionsafeFullName
(t: [string, GtexTissueDetail])
browser/src/GenePage/TissueExpressionTrack.tsx:452
↓ 4 callersMethodsavePreference
(key: any, value: any)
browser/src/userPreferences.ts:21
↓ 4 callersFunctionsimpleHash
(input: string)
browser/src/__factories__/VariantCooccurrenceCountsPerSeverityAndAf.ts:15
↓ 4 callersFunctionsum_mcnv_ac_or_af
(alts, values)
data-pipeline/src/data_pipeline/datasets/gnomad_sv_v2.py:61
↓ 4 callersFunctionsum_mcnv_ac_or_af
(alts, values)
data-pipeline/src/data_pipeline/datasets/gnomad_sv_v3.py:59
↓ 4 callersFunctionucscUrl
(chrom: string, pos: number, end: number)
browser/src/StructuralVariantPage/SVReferenceList.tsx:15
↓ 4 callersFunctionuseRequest
(makeRequest: any)
browser/src/useRequest.ts:28
↓ 4 callersFunctionwithAnchor
(Component: any)
browser/src/AnchorLink.tsx:28
↓ 4 callersFunctionx
(n: any)
browser/src/ConstraintTable/GnomadConstraintTable.tsx:44
↓ 4 callersFunctionx_position
(chrom, position)
data-pipeline/src/data_pipeline/datasets/gnomad_sv_v2.py:6
↓ 4 callersFunctionx_position
(chrom, position)
data-pipeline/src/data_pipeline/datasets/gnomad_sv_v3.py:9
↓ 3 callersFunctionClinvarReference
(variantClinvarVariationId: string)
browser/src/VariantPage/ReferenceList.tsx:50
↓ 3 callersFunction_parse_region_id
(region_id)
data-pipeline/src/data_pipeline/datasets/gnomad_v3/gnomad_v3_short_tandem_repeats.py:6
↓ 3 callersMethodconfig_keys
(self)
deploy/deployctl/config.py:26
↓ 3 callersFunctioncoverageConfigClassic
(exomeCoverage: any, genomeCoverage: any)
browser/src/coverageStyles.ts:1
↓ 3 callersFunctioncoverageConfigNew
(exomeCoverage: any, genomeCoverage: any)
browser/src/coverageStyles.ts:20
↓ 3 callersFunctioncreateTab
( showAllIndividuals: boolean, binEdges: any, includeExomes: boolean, includeGenomes: boolean, varia
browser/src/VariantPage/VariantGenotypeQualityMetrics.tsx:81
↓ 3 callersMethoddump
(self)
deploy/deployctl/config.py:29
↓ 3 callersFunctionexpectedIndex
(datasetId: SvDatasetId)
graphql-api/src/queries/structural-variant-queries.spec.ts:56
↓ 3 callersFunctionfetchLofCurationResultsByGene
( esClient: any, gnomadVersion: GnomadVersion, gene: Gene )
graphql-api/src/queries/lof-curation-result-queries.ts:59
↓ 3 callersFunctionfetchLofCurationResultsByRegion
( esClient: any, gnomadVersion: GnomadVersion, region: Region )
graphql-api/src/queries/lof-curation-result-queries.ts:97
↓ 3 callersFunctionfetchLofCurationResultsByVariant
( esClient: any, gnomadVersion: GnomadVersion, variantId: string )
graphql-api/src/queries/lof-curation-result-queries.ts:27
↓ 3 callersMethodfilePathFromCacheKey
(key: string)
graphql-api/src/queries/helpers/json-cache.ts:137
↓ 3 callersFunctionforDatasetsNotMatching
( exclusionPattern: RegExp, contextDescription: string, tests: (datasetId: DatasetId) => void )
tests/__helpers__/datasets.tsx:21
↓ 3 callersFunctionformatLogEntry
(obj: any)
graphql-api/src/logger.ts:8
↓ 3 callersFunctionformatMetricValue
(value: any)
browser/src/MitochondrialVariantPage/MitochondrialVariantSiteQualityMetrics.tsx:15
↓ 3 callersFunctionformatMitochondrialCoverageBins
(bins: any)
graphql-api/src/graphql/resolvers/mitochondrial-coverage.ts:7
↓ 3 callersMethodformatRecord
(obj)
reads/src/logging.js:18
↓ 3 callersFunctiongenotypeRepunitPairs
( shortTandemRepeat: ShortTandemRepeat | ShortTandemRepeatAdjacentRepeat )
browser/src/ShortTandemRepeatPage/shortTandemRepeatHelpers.ts:185
↓ 3 callersFunctiongetMetricDataForSequencingType
({ metric, genomeOrExome, metricDistributions, }: { metric: string | undefined | null genomeOrExome:
browser/src/VariantPage/VariantSiteQualityMetrics.tsx:80
↓ 3 callersFunctiongetMultiVariantSourceFields
( exomeSubset: string, genomeSubset: string, jointSubset: string )
graphql-api/src/queries/variant-datasets/gnomad-v4-variant-queries.ts:377
↓ 3 callersFunctiongetSelectedGenotypeDistribution
( shortTandemRepeatOrAdjacentRepeat: ShortTandemRepeat | ShortTandemRepeatAdjacentRepeat, { selectedRe
browser/src/ShortTandemRepeatPage/shortTandemRepeatHelpers.ts:116
↓ 3 callersFunctiongetTopLevelDataset
(datasetId: DatasetId)
dataset-metadata/metadata.ts:1165
↓ 3 callersFunctionhasExons
(datasetId: DatasetId)
dataset-metadata/metadata.ts:1117
↓ 3 callersFunctionhasShortTandemRepeats
(datasetId: DatasetId)
dataset-metadata/metadata.ts:1119
↓ 3 callersFunctionht_to_json
(ht: hl.Table, field: str = "row")
data-pipeline/src/data_pipeline/datasets/gnomad_v4/gnomad_v4_validation.py:44
↓ 3 callersFunctionisLiftoverTarget
(datasetId: DatasetId)
dataset-metadata/metadata.ts:1081
↓ 3 callersFunctionisLofOnNonCodingTranscript
(transcriptConsequence: any)
graphql-api/src/queries/variant-datasets/shared/flags.ts:9
↓ 3 callersFunctionisStructuralVariantId
(str: string, datasetId: DatasetId)
browser/src/identifiers.ts:9
↓ 3 callersMethodloadNextTrack
(exomeOrGenome: SequencingType, category: TrackCategory)
browser/src/ReadData/ReadData.tsx:291
↓ 3 callersFunctionmerge_overlapping_exons
(regions)
data-pipeline/src/data_pipeline/data_types/gene.py:6
↓ 3 callersFunctionnullify_nan
(value)
data-pipeline/src/data_pipeline/datasets/gnomad_v3/gnomad_v3_mitochondrial_variants.py:12
↓ 3 callersFunctionregionsInExons
( regions: R[], exons: Exon[] )
browser/src/ConstraintTrack.tsx:89
↓ 3 callersMethodrender
()
browser/src/StructuralVariantPage/StructuralVariantConsequenceList.tsx:42
↓ 3 callersFunctionrenderGnomadVariantFlag
(variant: Variant, context: VariantContext)
browser/src/VariantPage/VariantOccurrenceTable.tsx:44
↓ 3 callersFunctionrenderOEGraph
(constraint: any, category: any, color: any)
browser/src/ConstraintTable/GnomadConstraintTable.tsx:121
↓ 3 callersFunctionrenderOEMetrics
( constraint: GnomadConstraint, category: ConstraintFieldWithOEMetrics, highlightColor: string | null )
browser/src/ConstraintTable/GnomadConstraintTable.tsx:89
↓ 3 callersFunctionrenderStackedBar
(binValues: any, scale: any, { x, barWidth, ...segmentProps }: any)
browser/src/StackedHistogram.tsx:93
↓ 3 callersMethodsave
(self)
deploy/deployctl/config.py:42
↓ 3 callersFunctionshapeVariantSummary
(context: any)
graphql-api/src/queries/clinvar-variant-queries.ts:148
↓ 3 callersFunctionshapeVariantSummary
(context: any)
graphql-api/src/queries/variant-datasets/exac-variant-queries.ts:118
↓ 3 callersFunctionshapeVariantSummary
(subset: Subset, context: any)
graphql-api/src/queries/variant-datasets/gnomad-v4-variant-queries.ts:297
↓ 3 callersFunctionshapeVariantSummary
(exomeSubset: any, genomeSubset: any, context: any)
graphql-api/src/queries/variant-datasets/gnomad-v2-variant-queries.ts:162
↓ 3 callersFunctionshapeVariantSummary
(subset: any, context: any)
graphql-api/src/queries/variant-datasets/gnomad-v3-variant-queries.ts:199
↓ 3 callersFunctionuseWindowSize
()
browser/src/windowSize.ts:13
↓ 3 callersFunctionusesGrch37
(datasetId: DatasetId)
dataset-metadata/metadata.ts:1085
↓ 3 callersFunctionwithTimeout
(fn: any, timeout: any)
graphql-api/src/cache.ts:54
↓ 2 callersFunctionGRCh37TranscriptFieldResolver
(field: any, label: any)
graphql-api/src/graphql/resolvers/transcript-fields.ts:3
↓ 2 callersFunctionTooltip
({ region, oeLabel }: TooltipProps & { oeLabel: string })
browser/src/GenePage/MitochondrialRegionConstraintTrack.tsx:34
↓ 2 callersFunction_prepare_age_distribution
(locus)
data-pipeline/src/data_pipeline/datasets/gnomad_v3/gnomad_v3_short_tandem_repeats.py:20
↓ 2 callersFunction_prepare_allele_size_distribution
(allele_count_histogram)
data-pipeline/src/data_pipeline/datasets/gnomad_v3/gnomad_v3_short_tandem_repeats.py:82
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