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Functions8,648 in github.com/bio2rdf/bio2rdf-scripts

↓ 9 callersMethodgetBlobSendChunkSize
@return Returns the blobSendChunkSize.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:70
↓ 9 callersMethodgetCurrentServerGroup
Get the current server group. @returns The currently chosen group if sufficient server group selection criteria has been provided. Otherwise
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/fabric/jdbc/FabricMySQLConnection.java:77
↓ 9 callersMethodgetDatabaseName
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Field.java:489
↓ 9 callersMethodgetEntityExtractionResource
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/EntitySourceNaturalCategoryHandler.java:256
↓ 9 callersMethodgetInstance
Returns the ProfilerEventHandlerFactory that handles profiler events for the given connection. @param conn the connection to handle events
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ProfilerEventHandlerFactory.java:45
↓ 9 callersMethodgetName
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/DatabaseMetaData.java:547
↓ 9 callersMethodgetOrganismResource
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/EntitySourceNaturalCategoryHandler.java:274
↓ 9 callersMethodgetParameterType
(int arg0)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MysqlParameterMetadata.java:110
↓ 9 callersMethodgetProfileSql
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:257
↓ 9 callersMethodgetTimesRebalanced
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/ConnectionRegressionTest.java:3021
↓ 9 callersMethodgetUseLegacyDatetimeCode
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:1239
↓ 9 callersMethodgetUseLocalSessionState
@return Returns the useLocalSessionState.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:352
↓ 9 callersMethodgetUseSqlStateCodes
@return Returns the useSqlStateCodes state.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:374
↓ 9 callersMethodgetUseTimezone
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:380
↓ 9 callersMethodinitializeResultsMetadataFromCache
(String sql, CachedResultSetMetaData cachedMetaData, ResultSetInternalMethods resultSet)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MySQLConnection.java:138
↓ 9 callersMethodparse
(String pdbId)
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/AbstractPdbXmlParser.java:39
↓ 9 callersMethodsetBinaryStream
When a very large binary value is input to a LONGVARBINARY parameter, it may be more practical to send it via a java.io.InputStream. JDBC will read th
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:2883
↓ 9 callersMethodsetEscapeProcessing
If escape scanning is on (the default), the driver will do escape substitution before sending the SQL to the database. @param enable true
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StatementImpl.java:2420
↓ 9 callersMethodsetSavepoint
@see Connection#setSavepoint()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionImpl.java:4998
↓ 9 callersMethodsupportsResultSetConcurrency
JDBC 2.0 Does the database support the concurrency type in combination with the given result set type? @param type defined in java.sql.Res
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/DatabaseMetaData.java:7529
↓ 9 callersMethodtoString
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/vocabulary/PdbOwlVocabulary.java:469
↓ 9 callersMethodwriteLongInt
(int i)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Buffer.java:602
↓ 9 callersMethodwriteStringNoNull
(String s)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Buffer.java:643
↓ 8 callersMethodParse
($xml)
interpro/interpro.php:126
↓ 8 callersMethodadjustStartForFieldLength
(int nameStart, int nameLength)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MysqlIO.java:757
↓ 8 callersMethodcheckBounds
(int paramIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CallableStatement.java:254
↓ 8 callersMethodcheckTypes
(ResultSet rsToCheck, int[] types)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/MetaDataRegressionTest.java:2362
↓ 8 callersMethoderror
(SAXParseException e)
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/ContentHandlerState.java:90
↓ 8 callersMethodfastTimestampCreate
(Calendar cal, int year, int month, int day, int hour, int minute, int seconds, int secondsPart)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:967
↓ 8 callersMethodfixDecimalExponent
Adds '+' to decimal numbers that are positive (MySQL doesn't understand them otherwise @param dString The value as a string @return Strin
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:445
↓ 8 callersMethodformatDate
($date)
mesh/mesh.php:1102
↓ 8 callersMethodgetAutoGenerateTestcaseScript
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:63
↓ 8 callersMethodgetCacheServerConfiguration
@return Returns the cacheServerConfiguration.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:87
↓ 8 callersMethodgetCanonicalTimezone
Returns the 'official' Java timezone name for the given timezone @param timezoneStr the 'common' timezone name @return the Java timezone
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/TimeUtil.java:388
↓ 8 callersMethodgetCollationIndexForJavaEncoding
(String javaEncoding, java.sql.Connection conn)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CharsetMapping.java:630
↓ 8 callersMethodgetConnectionAttributes
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MySQLConnection.java:198
↓ 8 callersMethodgetCurrentTimeNanosOrMillis
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MysqlIO.java:2814
↓ 8 callersMethodgetData
Gets the value of the data property.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/fabric/xmlrpc/base/Array.java:33
↓ 8 callersMethodgetEnablePacketDebug
@return Returns the enablePacketDebug.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:153
↓ 8 callersMethodgetEntityExtractionResource
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/EntitySourceGeneticallyManipulatedHandler.java:578
↓ 8 callersMethodgetGeneResource
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/EntitySourceGeneticallyManipulatedHandler.java:523
↓ 8 callersMethodgetGlobalBlacklist
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/LoadBalancingConnectionProxy.java:848
↓ 8 callersMethodgetHost
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Connection.java:389
↓ 8 callersMethodgetMaintainTimeStats
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:210
↓ 8 callersMethodgetMetadataSafeStatement
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionImpl.java:2938
↓ 8 callersMethodgetMonth
($m)
affymetrix/affymetrix.php:384
↓ 8 callersMethodgetNClob
(int parameterIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ParameterBindings.java:75
↓ 8 callersMethodgetNString
JDBC 4.0 Get the value of a column in the current row as a Java String @param columnIndex the first column is 1, the second is 2... @ret
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/JDBC4ResultSet.java:207
↓ 8 callersMethodgetNativeBytes
Get the value of a column in the current row as a Java byte array. <p> <b>Be warned</b> If the blob is huge, then you may run out of memory. </p> @p
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:3163
↓ 8 callersMethodgetNativeDouble
Get the value of a column in the current row as a Java double. @param columnIndex the first column is 1, the second is 2,... @return the
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:3658
↓ 8 callersMethodgetNoAccessToProcedureBodies
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:1059
↓ 8 callersMethodgetNoDatetimeStringSync
@return Returns the noDatetimeStringSync.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:232
↓ 8 callersMethodgetPairResource
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/rna/StructNucleicAcidBasePairCategoryHandler.java:220
↓ 8 callersMethodgetParameter
(int index)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CallableStatement.java:273
↓ 8 callersMethodgetPccVoc
()
pubchem/pubchem.php:1054
↓ 8 callersMethodgetProcessEscapeCodesForPrepStmts
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:989
↓ 8 callersMethodgetResultSet
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/fabric/Response.java:76
↓ 8 callersMethodgetServerVariable
(String variableName)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MySQLConnection.java:116
↓ 8 callersMethodgetSingleValue
(String tableName, String columnName, String whereClause)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/BaseTestCase.java:392
↓ 8 callersMethodgetSourceFileResource
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/model/PdbRdfModel.java:178
↓ 8 callersMethodgetTinyInt1isBit
@return Returns the tinyInt1isBit.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:329
↓ 8 callersMethodhandleExceptionForBatch
(int endOfBatchIndex, int numValuesPerBatch, int[] updateCounts, SQLException ex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StatementImpl.java:1326
↓ 8 callersMethodisLast
Are we on the last row of the result set? @return true if on last row @throws SQLException if a database error occurs
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/RowData.java:171
↓ 8 callersMethodloadExtensions
Returns initialized instances of classes listed in extensionClassNames. There is no need to call Extension.init() method after that if you don't chang
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Util.java:532
↓ 8 callersMethodlogWarn
Logs the given message instance using the 'warn' level @param msg the message to log
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/log/Log.java:168
↓ 8 callersMethodnotSupported
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/RowDataCursor.java:433
↓ 8 callersMethodreadLong
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Buffer.java:342
↓ 8 callersMethodreadblock
(InputStream i, byte[] b)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:2718
↓ 8 callersMethodresource
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/rna/vocabulary/RnaKbOwlVocabulary.java:78
↓ 8 callersMethodretrieveSections
* Parse $gb_record_sections and return an array containing * the sections of type $aSectionType */
refseq/refseq.php:965
↓ 8 callersMethodsetClientInfo
(Properties properties)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/JDBC4MySQLConnection.java:54
↓ 8 callersMethodsetNsPrefix
(String prefix, String uri)
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/model/PdbRdfModel.java:961
↓ 8 callersMethodsetPinGlobalTxToPhysicalConnection
(boolean flag)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:1019
↓ 8 callersMethodsetPreferSlaveDuringFailover
@param preferSlaveDuringFailover The preferSlaveDuringFailover to set.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Connection.java:322
↓ 8 callersMethodsetTraceProtocol
@param flag The logProtocol to set.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:858
↓ 8 callersMethodsplitDBdotName
Next we check if there is anything to split. If so we return result in form of "database";"name" If string is NULL or wildcard (%), returns null and e
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:1908
↓ 8 callersMethodsplit_sql
This is the lexer this function splits up a SQL statement into easy to "parse" tokens for the SQL processor
common/php/php-sql-parser.php:160
↓ 8 callersMethodstatementBegins
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StatementImpl.java:912
↓ 8 callersMethodsupportsQuotedIdentifiers
Does the server this connection is connected to support quoted identifiers?
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Connection.java:353
↓ 8 callersMethodtestBug18869381WithProperties
(String sha256defaultDbUrl, Properties props)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/ConnectionRegressionTest.java:6492
↓ 8 callersMethodtestBug68562ExecuteBatch
(int batchSize, boolean useAffectedRows, boolean rewriteBatchedStatements, boolean realUpdate)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/StatementRegressionTest.java:6234
↓ 8 callersMethodtestBug71396StatementInit
Initializes and returns a Statement with maxRows defined. Tests the SQL_SELECT_LIMIT defined. Executing this query also forces this limit to be define
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/StatementRegressionTest.java:6575
↓ 8 callersMethodtestBug71396StatementMultiCheck
Executes a set of queries using a Statement (newly created) and tests if the results count is the expected.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/StatementRegressionTest.java:6591
↓ 8 callersMethodtoBytes
(char[] c)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/SingleByteCharsetConverter.java:146
↓ 8 callersMethodtoString
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/fabric/xmlrpc/base/Data.java:44
↓ 8 callersMethodtransactionBegun
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MySQLConnection.java:188
↓ 8 callersMethodunQuoteIdentifier
Trims identifier, removes quote chars from first and last positions and replaces double occurrences of quote char from entire identifier, i.e converts
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:2094
↓ 7 callersMethodadd_prefix
(prefix,uri)
toxkb/outdated_gems/rdfextraction/lib/trigfile.rb:25
↓ 7 callersMethodcheckAvailable
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MysqlParameterMetadata.java:67
↓ 7 callersMethodcloseOpenStreams
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/BufferRow.java:105
↓ 7 callersMethodcompareTo
(Server other)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/fabric/Server.java:101
↓ 7 callersMethodcreateStatement
Passes call to method on physical connection instance. Notifies listeners of any caught exceptions before re-throwing to client. @see java.sql.Connec
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/jdbc2/optional/ConnectionWrapper.java:466
↓ 7 callersMethodcreateXid
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/simple/XATest.java:448
↓ 7 callersMethoddropSchemaObject
(String objectType, String objectName)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/BaseTestCase.java:209
↓ 7 callersMethodequalsTo
(String tableTypeName)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/DatabaseMetaData.java:555
↓ 7 callersMethodescapeEasternUnicodeByteStream
Unfortunately, SJIS has 0x5c as a high byte in some of its double-byte characters, so we need to escape it. @param origBytes the original
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:293
↓ 7 callersMethodfastTimeCreate
(Calendar cal, int hour, int minute, int second, ExceptionInterceptor exceptionInterceptor)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/TimeUtil.java:241
↓ 7 callersMethodfastTimeCreate
(Calendar cal, int hour, int minute, int second)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:952
↓ 7 callersMethodfindCharset
(String alias)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:122
↓ 7 callersMethodgenerateConnectionCommentBlock
(StringBuffer buf)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MySQLConnection.java:54
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