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Functions8,648 in github.com/bio2rdf/bio2rdf-scripts

↓ 1,509 callersMethodput
(K key, V value)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CacheAdapter.java:31
↓ 1,422 callersMethodappend
(byte[] values)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:570
↓ 1,288 callersMethodassertTrue
Throws an exception with the given message if condition evalutates to 'false'. @param message the message to use in the exception @param c
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/util/BaseBugReport.java:156
↓ 1,256 callersMethodclose
We're done. @throws SQLException if a database error occurs
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/RowData.java:80
↓ 1,055 callersMethodadd
(List<Statement> statements)
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/model/PdbRdfModel.java:201
↓ 959 callersMethodnext
Returns the next row. @return the next row value @throws SQLException if a database error occurs
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/RowData.java:190
↓ 952 callersMethodexecuteUpdate
Execute a SQL INSERT, UPDATE or DELETE statement. In addition SQL statements that return nothing such as SQL DDL statements can be executed Any IDs ge
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StatementImpl.java:1548
↓ 870 callersMethodgetRdfModel
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/ContentHandlerState.java:185
↓ 763 callersMethodgetString
(int parameterIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ParameterBindings.java:83
↓ 739 callersMethodcreateSQLException
(String message, String sqlState, ExceptionInterceptor interceptor)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/SQLError.java:869
↓ 691 callersMethods2b
Converts the given string to bytes, using the connection's character encoding, or if not available, the JVM default encoding. @param s
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/DatabaseMetaData.java:6806
↓ 685 callersMethodgetString
Returns the localized message for the given message key @param key the message key @return The localized message for the key
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Messages.java:71
↓ 682 callersMethodexecuteQuery
Execute a SQL statement that returns a single ResultSet @param sql typically a static SQL SELECT statement @return a ResulSet that contai
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StatementImpl.java:1359
↓ 611 callersMethodequals
(Object m)
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/model/PdbRdfModel.java:601
↓ 565 callersMethodgetActiveMySQLConnection
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/LoadBalancedMySQLConnection.java:52
↓ 459 callersMethodcreateStatement
SQL statements without parameters are normally executed using Statement objects. If the same SQL statement is executed many times, it is more efficien
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionImpl.java:2400
↓ 459 callersMethodget
(K key)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CacheAdapter.java:29
↓ 443 callersMethodgetConnectionWithProps
(String propsList)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/BaseTestCase.java:226
↓ 414 callersMethodlength
@see java.sql.Clob#length()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Clob.java:98
↓ 406 callersMethodprepareStatement
A SQL statement with or without IN parameters can be pre-compiled and stored in a PreparedStatement object. This object can then be used to efficientl
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionImpl.java:4068
↓ 385 callersMethodversionMeetsMinimum
Does the server this connection is connected to meet or exceed the given version?
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Connection.java:365
↓ 376 callersMethodproperty
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/vocabulary/PdbOwlVocabulary.java:689
↓ 368 callersMethodcreateTable
(String tableName, String columnsAndOtherStuff)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/BaseTestCase.java:181
↓ 313 callersMethodgetInt
(int parameterIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ParameterBindings.java:69
↓ 309 callersMethodgetCurrentConnection
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ReplicationConnection.java:421
↓ 305 callersMethodgetProperty
(Resource s, Property p)
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/model/PdbRdfModel.java:654
↓ 296 callersMethodcheckAndFireConnectionError
Fires connection error event if required, before re-throwing exception @param sqlEx the SQLException that has occurred @throws SQLExceptio
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/jdbc2/optional/WrapperBase.java:50
↓ 292 callersMethodgetMetaData
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/StatementRegressionTest.java:4299
↓ 289 callersMethodisClosed
Returns true if this ResultSet is closed
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetInternalMethods.java:109
↓ 287 callersMethodgetConnectionMutex
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Connection.java:424
↓ 283 callersMethodequals
(Object obj)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/ConnectionRegressionTest.java:6876
↓ 276 callersMethodgetBytes
(int parameterIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ParameterBindings.java:57
↓ 270 callersMethodcreateResource
(UriPattern pattern, String... params)
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/ContentHandlerState.java:209
↓ 270 callersMethodisBuffering
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/ContentHandlerState.java:201
↓ 270 callersMethodisNil
(Attributes attributes)
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/ContentHandlerState.java:205
↓ 270 callersMethodstartBuffering
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/ContentHandlerState.java:193
↓ 269 callersMethodexecute
(Runnable r)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/ConnectionRegressionTest.java:5448
↓ 268 callersMethodgetBufferContent
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/ContentHandlerState.java:214
↓ 267 callersMethodstopBuffering
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/ContentHandlerState.java:197
↓ 223 callersMethodtoString
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/ConnectionRegressionTest.java:6836
↓ 209 callersMethodresource
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/vocabulary/PdbOwlVocabulary.java:478
↓ 208 callersMethodindexOf
(byte[] s, char c)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:1738
↓ 208 callersMethodread
(InputStream in, String base, String lang)
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/model/PdbRdfModel.java:877
↓ 205 callersMethodgetExceptionInterceptor
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Statement.java:83
↓ 199 callersMethodequals
(Object another)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/jdbc2/optional/MysqlXid.java:47
↓ 199 callersMethodsetValue
(long longValue, ExceptionInterceptor exceptionInterceptor)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionPropertiesImpl.java:438
↓ 196 callersMethodindexOfIgnoreCase
Finds the position of a substring within a string ignoring case. @param searchIn the string to search in @param searchFor the a
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:925
↓ 182 callersMethodtoString
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/DatabaseMetaData.java:520
↓ 179 callersMethodgetName
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Field.java:552
↓ 174 callersMethodcurrentTimeMillis
Retrieve the current system time in milliseconds, using the nanosecond time if possible.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/BaseTestCase.java:782
↓ 169 callersMethodtoString
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Field.java:805
↓ 167 callersMethodto_s
Format the outgoing object string as a triple.
toxkb/outdated_gems/rdfextraction/lib/literal.rb:48
↓ 161 callersMethodcheckClosed
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Connection.java:422
↓ 158 callersMethodsize
Only works on non dynamic result sets. @return the size of this row data @throws SQLException if a database error occurs
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/RowData.java:227
↓ 143 callersMethodgetObject
(int parameterIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ParameterBindings.java:77
↓ 141 callersMethodgetSQLState
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CommunicationsException.java:82
↓ 141 callersMethodremove
()
pdb/pdb2rdf-cli/src/main/java/com/dumontierlab/pdb2rdf/util/PdbsIterator.java:58
↓ 132 callersMethodgetValueAsBoolean
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionPropertiesImpl.java:73
↓ 129 callersMethodsetString
@see java.sql.Clob#setString(long, String)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Clob.java:177
↓ 121 callersMethodgetMessage
Returns the optional message for this event @return the message stored in this event
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/profiler/ProfilerEvent.java:503
↓ 119 callersMethodfindColumn
(String columnName)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:1024
↓ 115 callersMethodgetCatalog
Return the connections current catalog name, or null if no catalog name is set, or we dont support catalogs. <p> <b>Note:</b> MySQL's notion of catalo
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionImpl.java:2677
↓ 113 callersMethodput
(String symbol, PdbOwlVocabulary.Class atomClass)
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/vocabulary/PeriodicTable.java:196
↓ 110 callersMethodgetString
($xpath,$element = null)
clinicaltrials/clinicaltrials.php:1210
↓ 107 callersMethodgetTime
(int parameterIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ParameterBindings.java:85
↓ 106 callersFunctionQuad
($subject_uri, $predicate_uri, $object_uri, $graph_uri = null)
statistics/endpoint-statistics.php:244
↓ 102 callersMethodsplit
Splits stringToSplit into a list, using the given delimiter @param stringToSplit the string to split @param delimiter the strin
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:1284
↓ 100 callersMethodgetExceptionInterceptor
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/DatabaseMetaData.java:1031
↓ 100 callersMethodisClosed
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StatementImpl.java:2643
↓ 93 callersMethodcreateDecimalLiteral
(String value)
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/ContentHandlerState.java:244
↓ 93 callersMethodgetBytes
Returns the byte[] representation of the given char[] (re)using the given charset converter, and the given encoding.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:473
↓ 89 callersMethodaddBatch
@param sql @throws SQLException
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StatementImpl.java:377
↓ 89 callersMethodprepareCall
@param sql @throws SQLException
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionImpl.java:3974
↓ 85 callersMethodsetString
Set a parameter to a Java String value. The driver converts this to a SQL VARCHAR or LONGVARCHAR value (depending on the arguments size relative to th
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:3950
↓ 82 callersMethodgetGeneratedKeys
@throws SQLException
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StatementImpl.java:1814
↓ 82 callersMethodsetInt
(int value)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/fabric/xmlrpc/base/Value.java:91
↓ 81 callersMethodsetAutoCommit
Called when an application calls Connection.setAutoCommit(), before the driver processes its own internal logic for setAutoCommit(). Interceptors sho
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionLifecycleInterceptor.java:102
↓ 81 callersMethodwriteByte
(byte b)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Buffer.java:502
↓ 80 callersMethodgetExceptionInterceptor
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MysqlIO.java:4884
↓ 80 callersMethodgetShort
(int parameterIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ParameterBindings.java:81
↓ 80 callersMethodstartsWith
(byte[] dataFrom, String chars)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:1362
↓ 79 callersMethodgetUriBuilder
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/ContentHandlerState.java:189
↓ 76 callersMethodoutput
=================================================================== output triples to string. ========================================================
toxkb/outdated_gems/rdfextraction/lib/concept.rb:35
↓ 75 callersMethodgetInt
(byte[] buf)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:684
↓ 75 callersMethodgetTimestamp
(int parameterIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ParameterBindings.java:87
↓ 74 callersMethodexecuteQuery
A Prepared SQL query is executed and its ResultSet is returned @return a ResultSet that contains the data produced by the query - never null
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:1967
↓ 73 callersMethodgetConnection
JDBC 2.0 Return the Connection that produced the Statement. @return the Connection that produced the Statement @throws SQLException if a
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StatementImpl.java:1779
↓ 73 callersMethodgetEncoding
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:155
↓ 71 callersMethodclear
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Buffer.java:59
↓ 68 callersMethodgetMysqlType
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Field.java:548
↓ 68 callersMethodgetPosition
Returns the current position to write to/ read from @return the current position to write to/ read from
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Buffer.java:223
↓ 66 callersMethodbuildUri
(UriPattern uriPatterns, String... args)
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/vocabulary/uri/UriBuilder.java:35
↓ 65 callersMethodgetExceptionInterceptor
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:7923
↓ 65 callersMethodwrite
@see java.io.OutputStream#write(byte[])
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/NamedPipeSocketFactory.java:161
↓ 64 callersFunctionQuadLiteral
($subject_uri, $predicate_uri, $literal, $dt = null, $lang = null, $graph_uri = null)
statistics/endpoint-statistics.php:251
↓ 64 callersMethodgetDate
(int parameterIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ParameterBindings.java:63
↓ 64 callersMethodregisterOutParameter
@see java.sql.CallableStatement#registerOutParameter(int, int)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CallableStatement.java:1859
↓ 63 callersMethodclientPrepareStatement
Prepares a statement on the client, using client-side emulation (irregardless of the configuration property 'useServerPrepStmts') with the same semant
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Connection.java:66
↓ 62 callersMethodendsWith
(byte[] dataFrom, String suffix)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:271
↓ 62 callersMethoditerator
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CallableStatement.java:348
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