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Functions8,648 in github.com/bio2rdf/bio2rdf-scripts

↓ 61 callersMethodgetOutputParameters
Returns the ResultSet that holds the output parameters, or throws an appropriate exception if none exist, or they weren't returned. @return the Resul
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CallableStatement.java:1559
↓ 61 callersMethodhasNext
Returns true if another row exsists. @return true if more rows @throws SQLException if a database error occurs
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/RowData.java:114
↓ 60 callersMethodparseURL
(String url, Properties defaults)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/NonRegisteringDriver.java:602
↓ 60 callersMethodwasNull
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/StatementRegressionTest.java:4611
↓ 59 callersMethodsetInt
Set a parameter to a Java int value. The driver converts this to a SQL INTEGER value when it sends it to the database. @param parameterIndex
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:3365
↓ 59 callersMethodtoString
(byte[] value, int offset, int length, String encoding)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:2153
↓ 58 callersMethodcheckClosed
Checks if closed() has been called, and throws an exception if so @throws SQLException if this statement has been closed
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StatementImpl.java:441
↓ 58 callersMethodgetColumnName
What's a column's name? @param column the first column is 1, the second is 2, etc. @return the column name @throws SQLException
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetMetaData.java:238
↓ 58 callersMethodgetSingleIndexedValueWithQuery
(Connection c, int columnIndex, String query)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/BaseTestCase.java:362
↓ 57 callersMethodgetExceptionInterceptor
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionImpl.java:5397
↓ 57 callersMethodstartsWithIgnoreCaseAndWs
Determines whether or not the string 'searchIn' contains the string 'searchFor', disregarding case and leading whitespace @param searchIn
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:1450
↓ 56 callersMethodcheckClosed
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ServerPreparedStatement.java:498
↓ 56 callersMethodcontains
(Resource s, Property p, RDFNode o)
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/model/PdbRdfModel.java:329
↓ 56 callersMethodexecute
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CallableStatement.java:860
↓ 55 callersMethodcreateProcedure
(String procedureName, String procedureDefn)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/BaseTestCase.java:173
↓ 55 callersMethodgetMoreResults
getMoreResults moves to a Statement's next result. If it returns true, this result is a ResulSet. @return true if the next ResultSet is valid @excep
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StatementImpl.java:2012
↓ 55 callersMethodwasNull
@see java.sql.CallableStatement#wasNull()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CallableStatement.java:2270
↓ 54 callersMethodgetResultSet
Build a result set. Delegates to buildResultSetWithRows() to build a JDBC-version-specific ResultSet, given rows as byte data, and field information.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MysqlIO.java:401
↓ 54 callersMethodisJdbc4
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Util.java:121
↓ 54 callersMethodread
@see java.io.InputStream#read()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CompressedInputStream.java:217
↓ 53 callersMethodcloseOnCompletion
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StatementImpl.java:2770
↓ 53 callersMethodinfo
(msg)
toxkb/toxcast/toxcast2rdf.rb:49
↓ 53 callersMethodisRunningOnJdk131
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/BaseTestCase.java:594
↓ 52 callersMethodsetObject
(int parameterIndex, Object parameterObj)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:3585
↓ 51 callersMethodgetInstance
(Connection forConn, String url, int cacheMaxSize, int maxKeySize, Properties connectionProperties)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CacheAdapterFactory.java:31
↓ 49 callersMethodcommit
Called when an application calls Connection.commit(), before the driver processes its own internal logic for commit(). Interceptors should return "tr
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionLifecycleInterceptor.java:57
↓ 49 callersMethodgetLong
(int parameterIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ParameterBindings.java:71
↓ 49 callersMethodwrite
(OutputStream out, String lang, String base)
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/model/PdbRdfModel.java:1009
↓ 48 callersMethodexecuteBatch
JDBC 2.0 Submit a batch of commands to the database for execution. This method is optional. @return an array of update counts containing one element
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StatementImpl.java:1023
↓ 48 callersMethodsetNull
Set a parameter to SQL NULL <p> <B>Note:</B> You must specify the parameters SQL type (although MySQL ignores it) </p> @param parameterIndex
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:3450
↓ 47 callersMethodassertThrows
(Class<EX> throwable, Callable<?> testRoutine)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/BaseTestCase.java:708
↓ 47 callersMethodgetByteBuffer
Returns the array of bytes this Buffer is using to read from. @return byte array being read from
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Buffer.java:186
↓ 47 callersMethodgetNamedParamIndex
(String paramName, boolean forOut)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CallableStatement.java:1422
↓ 46 callersMethodcheckClosed
Ensures that the result set is not closed @throws SQLException if the result set is closed
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:730
↓ 46 callersMethodisUnsigned
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Field.java:750
↓ 45 callersMethodsetPosition
Set the current position to write to/ read from @param position the position (0-based index)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Buffer.java:470
↓ 44 callersMethodexecuteUpdate
Execute a SQL INSERT, UPDATE or DELETE statement. In addition, SQL statements that return nothing such as SQL DDL statements can be executed. @return
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:2061
↓ 44 callersMethodexit
()
pdb/pdb2rdf-cluster/src/main/java/com/dumontierlab/pdb2rdf/cluster/servlet/ClusterController.java:89
↓ 44 callersMethodgetColumns
Get a description of table columns available in a catalog. <P> Only column descriptions matching the catalog, schema, table and column name criteria a
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/DatabaseMetaData.java:2341
↓ 44 callersMethodgetErrorCode
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MysqlDataTruncation.java:62
↓ 44 callersMethodnextToken
Returns the next token @return the next token.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/EscapeTokenizer.java:76
↓ 44 callersMethodserverPrepareStatement
Prepares a statement on the server (irregardless of the configuration property 'useServerPrepStmts') with the same semantics as the java.sql.Connectio
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Connection.java:259
↓ 44 callersMethodversionMeetsMinimum
(int major, int minor, int subminor)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionImpl.java:5235
↓ 43 callersMethodcheckClosed
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/jdbc2/optional/ConnectionWrapper.java:779
↓ 43 callersMethodgetBufLength
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Buffer.java:177
↓ 43 callersMethodgetColumnClassName
JDBC 2.0 <p> Return the fully qualified name of the Java class whose instances are manufactured if ResultSet.getObject() is called to retrieve a valu
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetMetaData.java:171
↓ 43 callersMethodgetExceptionInterceptor
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionPropertiesImpl.java:633
↓ 43 callersMethodgetPedantic
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:245
↓ 43 callersMethodgetValue
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/fabric/xmlrpc/base/Data.java:33
↓ 42 callersMethodequals
(Object o)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/fabric/Server.java:87
↓ 42 callersMethodgetConnectionMutex
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionImpl.java:118
↓ 42 callersMethodgetValueAsString
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionPropertiesImpl.java:545
↓ 41 callersMethodinitialize
Called once by the driver when it needs to configure the provider. @param conn the connection that the provider belongs too. @param config
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/JDBC4ClientInfoProvider.java:48
↓ 40 callersMethodthrowRangeException
(String valueAsString, int columnIndex, int jdbcType)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:7058
↓ 39 callersMethodgetActiveConnection
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/fabric/jdbc/FabricMySQLConnectionProxy.java:456
↓ 37 callersMethodeach
=================================================================== loop through triples. ============================================================
toxkb/outdated_gems/rdfextraction/lib/concept.rb:43
↓ 37 callersMethodsetCatalog
Called when an application calls Connection.setCatalog(), before the driver processes its own internal logic for setCatalog(). Interceptors should re
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionLifecycleInterceptor.java:117
↓ 36 callersMethodgetUpdateCount
Returns the update count for this result set (if one exists), otherwise -1. @ return the update count for this result set (if one exists), otherwise
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetInternalMethods.java:86
↓ 36 callersMethodreadByte
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Buffer.java:264
↓ 36 callersMethodwriteBytesNoNull
(byte[] bytes)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Buffer.java:509
↓ 35 callersMethodassertCurrentUser
(String url, Properties props, String expectedUser, boolean sslRequired)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/ConnectionRegressionTest.java:4497
↓ 35 callersMethodcancel
Cancels this Statement object if both the DBMS and driver support aborting an SQL statement. This method can be used by one thread to cancel a stateme
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StatementImpl.java:406
↓ 35 callersMethoderror
(msg)
toxkb/toxcast/toxcast2rdf.rb:45
↓ 35 callersMethodexecute
Some prepared statements return multiple results; the execute method handles these complex statements as well as the simpler form of statements handle
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:1129
↓ 35 callersMethodinvoke
(Object proxy, Method method, Object[] args)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/FailoverConnectionProxy.java:102
↓ 35 callersMethodrollback
Called when an application calls Connection.rollback(), before the driver processes its own internal logic for rollback(). Interceptors should return
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionLifecycleInterceptor.java:72
↓ 35 callersMethodsetTimestamp
Set a parameter to a java.sql.Timestamp value. The driver converts this to a SQL TIMESTAMP value when it sends it to the database. @param parameterIn
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:4245
↓ 35 callersMethodtoString
Returns this PreparedStatement represented as a string. @return this PreparedStatement represented as a string.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:4687
↓ 34 callersMethodcheckColumnBounds
Checks if columnIndex is within the number of columns in this result set. @param columnIndex the index to check @throws SQLException
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:750
↓ 34 callersMethodwrite
(byte[] b, int off, int len)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/UnreliableSocketFactory.java:502
↓ 33 callersMethodgetInt
@see java.sql.CallableStatement#getInt(int)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CallableStatement.java:1365
↓ 33 callersMethodnotImplemented
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/SQLError.java:1203
↓ 33 callersMethodsetMaxRows
@param property @throws SQLException
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:683
↓ 33 callersMethodwriteLong
(long i)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Buffer.java:592
↓ 32 callersMethodbind
(SocketAddress bindpoint)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/UnreliableSocketFactory.java:187
↓ 32 callersMethodcreateStatement
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ReplicationConnection.java:370
↓ 32 callersMethodnativeSQL
A driver may convert the JDBC sql grammar into its system's native SQL grammar prior to sending it; nativeSQL returns the native form of the statement
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionImpl.java:3905
↓ 32 callersMethodquery
------------------------------------------------------------- query the sparql endpoint and get result
toxkb/outdated_gems/rdfextraction/lib/sparqladaptor.rb:60
↓ 32 callersMethodsetColumnValue
(int index, byte[] value)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/BufferRow.java:622
↓ 31 callersMethodgetParameterIndexOffset
For calling stored functions, this will be -1 as we don't really count the first '?' parameter marker, it's only syntax, but JDBC counts it as #1, oth
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:4708
↓ 31 callersMethodmapOutputParameterIndexToRsIndex
(int paramIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CallableStatement.java:1830
↓ 31 callersMethodstart
Starts the server, returning a java.lang.Process instance that represents the mysql server. @return Process a java.lang.Process instance representing
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/util/ServerController.java:138
↓ 30 callersMethodexecute
(MethodCall methodCall)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/fabric/xmlrpc/Client.java:65
↓ 30 callersMethodfixParameterName
Adds 'at' symbol to beginning of parameter names if needed. @param paramNameIn the parameter name to 'fix' @return the parameter name wit
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CallableStatement.java:988
↓ 30 callersMethodgetCancelTimer
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MySQLConnection.java:64
↓ 30 callersMethodgetId
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MySQLConnection.java:86
↓ 30 callersMethodsetBytes
@see Blob#setBytes(long, byte[])
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Blob.java:207
↓ 30 callersMethodsetInt
@see java.sql.CallableStatement#setInt(java.lang.String, int)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CallableStatement.java:2130
↓ 30 callersMethodstartsWithIgnoreCase
Determines whether or not the string 'searchIn' contains the string 'searchFor', dis-regarding case starting at 'startAt' Shorthand for a String.regio
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:1390
↓ 29 callersMethodgetBigDecimal
(int parameterIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ParameterBindings.java:47
↓ 29 callersMethodgetPcbVoc
()
pubchem/pubchem.php:1058
↓ 29 callersMethodgetValueAsInt
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionPropertiesImpl.java:364
↓ 28 callersMethodadd_statement
(pp,p,op,o)
toxkb/outdated_gems/rdfextraction/lib/concept.rb:21
↓ 28 callersMethodcheckRowPos
Ensures that the cursor is positioned on a valid row and that the result set is not closed @throws SQLException if the result set is not
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:777
↓ 28 callersMethoddownHost
(String hostname)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/UnreliableSocketFactory.java:104
↓ 28 callersMethodgetColumnCount
Whats the number of columns in the ResultSet? @return the number @throws SQLException if a database access error occurs
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetMetaData.java:185
↓ 28 callersMethodgetDouble
(int parameterIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ParameterBindings.java:65
↓ 28 callersMethodgetGetProceduresReturnsFunctions
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:1363
↓ 28 callersMethodgetServerCharset
Returns the server's character set @return the server's character set.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Connection.java:159
↓ 28 callersMethodgetZeroDateTimeBehavior
@return Returns the zeroDateTimeBehavior.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:403
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