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Functions8,648 in github.com/bio2rdf/bio2rdf-scripts

↓ 28 callersMethodmysqlToJavaType
Maps the given MySQL type to the correct JDBC type.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MysqlDefs.java:177
↓ 28 callersMethodquoteIdentifier
Surrounds identifier with quoteChar and duplicates these symbols inside the identifier. @param quoteChar ` or " @param identifier
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:2037
↓ 28 callersMethodsetFetchSize
(int rows)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/StatementRegressionTest.java:4466
↓ 28 callersMethodtoCamelCase
(String inputString)
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/util/UriUtil.java:34
↓ 28 callersMethodtoString
Returns a representation of this event as a String. @return a String representation of this event.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/profiler/ProfilerEvent.java:194
↓ 27 callersMethodbuildResultSet
(com.mysql.jdbc.Field[] fields, java.util.ArrayList<ResultSetRow> rows)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/DatabaseMetaData.java:801
↓ 27 callersMethodclear
=================================================================== clear the triples from the set. ==================================================
toxkb/outdated_gems/rdfextraction/lib/concept.rb:51
↓ 27 callersMethodensureCapacity
(int additionalData)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Buffer.java:120
↓ 27 callersMethodparserKnowsUnicode
Does the server this connection is connected to support unicode?
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Connection.java:230
↓ 27 callersMethodurlEncode
(String inputString)
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/util/UriUtil.java:101
↓ 26 callersMethodadd_literal
(pp,p,o)
toxkb/outdated_gems/rdfextraction/lib/concept.rb:25
↓ 26 callersMethodgetCharacterStream
(int parameterIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ParameterBindings.java:59
↓ 26 callersMethodgetServerTimezoneTZ
Returns the TimeZone that represents the configured timezone for the server.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Connection.java:165
↓ 26 callersMethodisReadOnly
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MySQLConnection.java:150
↓ 26 callersMethodsetReadOnly
You can put a connection in read-only mode as a hint to enable database optimizations <B>Note:</B> setReadOnly cannot be called while in the middle of
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionImpl.java:4977
↓ 26 callersMethodtoString
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:7094
↓ 26 callersMethodwriteString
(String s)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Buffer.java:624
↓ 25 callersMethoddropTable
(String tableName)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/BaseTestCase.java:189
↓ 25 callersMethodgetAddress
(boolean withTrailingPort)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/BaseTestCase.java:1005
↓ 25 callersMethodgetColumnValue
(int index)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/BufferRow.java:308
↓ 25 callersMethodgetTables
Get a description of tables available in a catalog. <P> Only table descriptions matching the catalog, schema, table name and type criteria are returne
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/DatabaseMetaData.java:4675
↓ 25 callersMethodisCloseOnCompletion
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StatementImpl.java:2776
↓ 25 callersMethodsetInternal
(int paramIndex, byte[] val)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:3371
↓ 25 callersMethodsetTime
Set a parameter to a java.sql.Time value. The driver converts this to a SQL TIME value when it sends it to the database. @param parameterIndex
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:4171
↓ 24 callersMethodadd_relationship
(pp,p,object)
toxkb/outdated_gems/rdfextraction/lib/concept.rb:29
↓ 24 callersMethodconnect
Creates a new socket using the given properties. Properties are parsed by the driver from the URL. All properties other than sensitive ones (user and
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/SocketFactory.java:88
↓ 24 callersMethodcreateCommunicationsException
(MySQLConnection conn, long lastPacketSentTimeMs, long lastPacketReceivedTimeMs, Exception underly
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/SQLError.java:1027
↓ 24 callersMethodgetIO
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MySQLConnection.java:90
↓ 24 callersFunctiongetLiteralTripleFromString
($aLine)
dbpedia/dbpedia2bio2rdf.php:295
↓ 24 callersMethodhasMoreTokens
Does this tokenizer have more tokens available? @return if this tokenizer has more tokens available
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/EscapeTokenizer.java:67
↓ 24 callersMethodreadFieldLength
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Buffer.java:272
↓ 24 callersMethodsetString
@see java.sql.CallableStatement#setString(java.lang.String, java.lang.String)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CallableStatement.java:2228
↓ 24 callersMethodtransactionBegun
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/fabric/jdbc/FabricMySQLConnectionProxy.java:585
↓ 24 callersFunctionwriteTripleToFile
($triple, $outFh)
dbpedia/dbpedia2bio2rdf.php:286
↓ 23 callersMethoddownload
# Download the database file meddra_adverse_effects uncompress the file once downloaded @param [String] the path of the download folder @return [Strin
toxkb/sider/lib/label_mapping.rb:33
↓ 23 callersMethodequals
(Object obj)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/DatabaseMetaData.java:413
↓ 23 callersMethodfastDateCreate
(Calendar cal, int year, int month, int day)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:935
↓ 23 callersMethodfirst
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/StatementRegressionTest.java:4143
↓ 23 callersMethodfree
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Clob.java:275
↓ 23 callersMethodgetBinding
Returns the structure representing the value that (can be)/(is) bound at the given parameter index. @param parameterIndex 1-based @param f
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ServerPreparedStatement.java:863
↓ 23 callersMethodgetBoolean
(int parameterIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ParameterBindings.java:53
↓ 23 callersMethodgetExceptionInterceptor
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StatementImpl.java:2754
↓ 23 callersMethodgetLog
Returns the log mechanism that should be used to log information from/for this Connection. @return the Log instance to use for logging messages. @thr
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Connection.java:143
↓ 23 callersMethodgetSQLType
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Field.java:600
↓ 23 callersMethodgetString
Get the value of a column in the current row as a Java String @param columnIndex the first column is 1, the second is 2... @return the co
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:5161
↓ 23 callersMethodgetUseInformationSchema
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:347
↓ 23 callersMethodparseList
($str, $delim = ';')
pharmgkb/pharmgkb.php:373
↓ 23 callersMethodsetUrl
This method is used by the app server to set the url string specified within the datasource deployment descriptor. It is discovered using introspectio
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/jdbc2/optional/MysqlDataSource.java:331
↓ 23 callersMethodsyncUpdate
Reset UPDATE prepared statement to value in current row. This_Row MUST point to current, valid row. @throws SQLException
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/UpdatableResultSet.java:1460
↓ 22 callersMethodaddBatch
JDBC 2.0 Add a set of parameters to the batch. @exception SQLException if a database-access error occurs. @see StatementImpl#addBatch
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:892
↓ 22 callersMethodgetCalendarInstanceForSessionOrNew
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MySQLConnection.java:62
↓ 22 callersMethodgetColumnType
Determines the COLUMN_TYPE information based on parameter type (IN, OUT or INOUT) or function return parameter. @param isOutParam Indicate
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/DatabaseMetaData.java:1015
↓ 22 callersMethodgetColumnType
What is a column's SQL Type? (java.sql.Type int) @param column the first column is 1, the second is 2, etc. @return the java.sql.Type val
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetMetaData.java:265
↓ 22 callersMethodgetRow
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/StatementRegressionTest.java:4327
↓ 22 callersMethodhandleNewInstance
Handles constructing new instance with the given constructor and wrapping (or not, as required) the exceptions that could possibly be generated
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Util.java:374
↓ 22 callersMethodisNull
(int parameterIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ParameterBindings.java:91
↓ 22 callersMethodsetPingTarget
(PingTarget pingTarget)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Statement.java:81
↓ 22 callersMethodsetType
(BindValue oldValue, int bufferType)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ServerPreparedStatement.java:2180
↓ 22 callersMethodtoString
@see java.lang.Object#toString()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ServerPreparedStatement.java:2602
↓ 21 callersMethodconsumeEvent
(ProfilerEvent evt)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/profiler/ProfilerEventHandler.java:30
↓ 21 callersMethodgetNullCatalogMeansCurrent
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:234
↓ 21 callersMethodindexOfQuoteDoubleAware
(String searchIn, String quoteChar, int startFrom)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:2122
↓ 21 callersMethodisResultSetClosedForTestBug69746
(ResultSet resultSet)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/ConnectionRegressionTest.java:5806
↓ 21 callersMethodread
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/ConnectionRegressionTest.java:6890
↓ 21 callersMethodreadInt
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Buffer.java:293
↓ 21 callersMethodreadString
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Buffer.java:389
↓ 21 callersMethodrun
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/simple/BlobTest.java:46
↓ 21 callersMethodserverSupportsStoredProcedures
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/CallableStatementRegressionTest.java:945
↓ 21 callersMethodversionMeetsMinimum
Does the version of the MySQL server we are connected to meet the given minimums? @param major @param minor @param subminor
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MysqlIO.java:2855
↓ 20 callersMethodcast
Reflexive access on JDK-1.5's Class.cast() method so we don't have to move that out into separate classes built for JDBC-4.0. @param invokeOn @param
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Util.java:424
↓ 20 callersMethodclearParameters
In general, parameter values remain in force for repeated used of a Statement. Setting a parameter value automatically clears its previous value. Howe
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:1021
↓ 20 callersMethodfindAndSeekToOffset
(int index)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/BufferRow.java:126
↓ 20 callersMethodgetColumnTypeName
Whats is the column's data source specific type name? @param column the first column is 1, the second is 2, etc. @return the type name @
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetMetaData.java:280
↓ 20 callersMethodgetField
Returns the field instance for the given column index @param columnIndex the column number to retrieve a field instance for @return the f
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetMetaData.java:390
↓ 20 callersMethodgetVersionColumns
Get a description of a table's columns that are automatically updated when any value in a row is updated. They are unordered. <P> Each column descript
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/DatabaseMetaData.java:6416
↓ 20 callersMethodisNoBackslashEscapesSet
Is the server in a sql_mode that doesn't allow us to use \\ to escape things? @return Returns the noBackslashEscapes.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Connection.java:209
↓ 20 callersMethodsend
@param packet @param packetLen length of header + payload @throws SQLException
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MysqlIO.java:3589
↓ 20 callersMethodsendCommand
Send a command to the MySQL server If data is to be sent with command, it should be put in extraData. Raw packets can be sent by setting queryPacket
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MysqlIO.java:2329
↓ 19 callersMethodcheckClosed
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionImpl.java:1223
↓ 19 callersMethodflush
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/UnreliableSocketFactory.java:497
↓ 19 callersFunctiongetID
($obj)
statistics/endpoint-statistics.php:235
↓ 19 callersMethodisHostMaster
(String host)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ReplicationConnection.java:259
↓ 19 callersMethodisHostSlave
(String host)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ReplicationConnection.java:271
↓ 19 callersFunctionquery
($sparql)
statistics/endpoint-statistics.php:209
↓ 19 callersMethodresetCancelledState
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StatementImpl.java:917
↓ 19 callersMethodtestIndexOfIgnoreCaseMySQLIndexMarker
(String source, int pos)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/simple/StringUtilsTest.java:499
↓ 19 callersMethodupdateString
(int columnIndex, String x)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/StatementRegressionTest.java:4593
↓ 18 callersMethoddoForAll
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/IterateBlock.java:46
↓ 18 callersMethodgetInstance
(ConnectionWrapper c, MysqlPooledConnection conn, PreparedStatement toWrap)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/jdbc2/optional/PreparedStatementWrapper.java:71
↓ 18 callersMethodgetKey
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/DatabaseMetaData.java:490
↓ 18 callersMethodgetValue
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/DatabaseMetaData.java:494
↓ 18 callersMethodsetReadOnly
(boolean readOnly)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ReplicationConnection.java:671
↓ 18 callersMethodsetState
(ContentHandlerState state)
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/ContentHandlerState.java:178
↓ 18 callersMethodtestBug71396MultiSettingsCheck
Executes a query containing the clause LIMIT with a Statement and a PreparedStatement, using a combination of Connection properties, maxRows value and
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/StatementRegressionTest.java:6715
↓ 18 callersMethodtestPrecisionForType
(String typeName, int m, int d, boolean unsigned)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/NumbersRegressionTest.java:143
↓ 17 callersMethodchangeUser
Changes the user on this connection by performing a re-authentication. If authentication fails, the connection will remain under the context of the cu
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Connection.java:54
↓ 17 callersMethodcheckTime
(String testType, double avgExecTimeMs)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/MicroPerformanceRegressionTest.java:357
↓ 17 callersMethodcreateProperty
(String nameSpace, String localName)
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/model/PdbRdfModel.java:465
↓ 17 callersMethodexecuteBatch
JDBC 2.0 Submit a batch of commands to the database for execution. This method is optional. @return an array of update counts containing one element
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:1241
↓ 17 callersMethodgetByte
(int parameterIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ParameterBindings.java:55
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