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Functions8,648 in github.com/bio2rdf/bio2rdf-scripts

↓ 12 callersMethodcreateNClob
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/JDBC4MySQLConnection.java:66
↓ 12 callersMethodflushAllHostLists
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/UnreliableSocketFactory.java:69
↓ 12 callersMethodgetCacheResultSetMetadata
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:82
↓ 12 callersMethodgetDontTrackOpenResources
@return Returns the dontTrackOpenResources.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:124
↓ 12 callersMethodgetGatherPerformanceMetrics
@return Returns the gatherPerformanceMetrics.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:170
↓ 12 callersMethodgetGeneOrganismResource
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/EntitySourceGeneticallyManipulatedHandler.java:516
↓ 12 callersMethodgetJDBC4Connection
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/JDBC4LoadBalancedMySQLConnection.java:46
↓ 12 callersMethodgetMaxQuerySizeToLog
@return Returns the maxQuerySizeToLog.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:215
↓ 12 callersMethodgetNativeInt
Get the value of a column in the current row as a Java int. @param columnIndex the first column is 1, the second is 2,... @return the col
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:3831
↓ 12 callersMethodgetNetTimeoutForStreamingResults
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:1123
↓ 12 callersMethodgetPdbId
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/model/PdbRdfModel.java:188
↓ 12 callersMethodgetProcedures
Get a description of stored procedures available in a catalog. <P> Only procedure descriptions matching the schema and procedure name criteria are ret
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/DatabaseMetaData.java:4080
↓ 12 callersMethodgetResultSet
getResultSet returns the current result as a ResultSet. It should only be called once per result. @return the current result set; null if there are n
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StatementImpl.java:2189
↓ 12 callersMethodgetUnreliableReplicationConnection
(String[] hostNames, Properties props)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/BaseTestCase.java:988
↓ 12 callersMethodgetValueAsObject
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionPropertiesImpl.java:195
↓ 12 callersMethodgetXAConnection
@see javax.sql.XADataSource#getXAConnection()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/jdbc2/optional/MysqlXADataSource.java:38
↓ 12 callersMethodgetYearIsDateType
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:398
↓ 12 callersMethodlogInternal
(Level level, Object msg, Throwable exception)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/log/Jdk14Logger.java:249
↓ 12 callersMethodlogInternal
(int level, Object msg, Throwable exception)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/log/StandardLogger.java:249
↓ 12 callersFunctionmakeLabel
($o, $uri, $label)
statistics/endpoint-statistics.php:240
↓ 12 callersMethodnotSupported
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/RowDataDynamic.java:417
↓ 12 callersMethodproperty
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/rna/vocabulary/RnaKbOwlVocabulary.java:125
↓ 12 callersMethodreadFully
(InputStream in, byte[] b, int off, int len)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MysqlIO.java:2903
↓ 12 callersMethodreallyResult
Does the result set contain rows, or is it the result of a DDL or DML statement?
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetInternalMethods.java:47
↓ 12 callersMethodsetBytes
Set a parameter to a Java array of bytes. The driver converts this to a SQL VARBINARY or LONGVARBINARY (depending on the argument's size relative to t
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:2992
↓ 12 callersMethodsetNull
@see java.sql.PreparedStatement#setNull(int, int)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ServerPreparedStatement.java:1955
↓ 12 callersMethodsetSessionMaxRows
(int max)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Connection.java:400
↓ 12 callersMethodsetShardKey
Set the shard key for the data being accessed.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/fabric/jdbc/FabricMySQLConnection.java:41
↓ 11 callersMethodassertByteArrayEquals
(String message, byte[] expected, byte[] actual)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/BaseTestCase.java:744
↓ 11 callersMethodbeforeFirst
Moves to before first. @throws SQLException if a database error occurs
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/RowData.java:64
↓ 11 callersMethodcheckClosed
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/JDBC4MysqlSQLXML.java:135
↓ 11 callersMethodclear
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/ContentHandlerState.java:221
↓ 11 callersMethodcreateStatement
(Resource s, Property p, RDFNode o)
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/model/PdbRdfModel.java:519
↓ 11 callersMethodgetClob
(int parameterIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ParameterBindings.java:61
↓ 11 callersMethodgetGroupsMatching
(String group)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionGroupManager.java:65
↓ 11 callersMethodgetMetaData
The numbers, types and properties of a ResultSet's columns are provided by the getMetaData method @return a description of the ResultSet's columns @
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:2786
↓ 11 callersMethodgetMysqlCharsetForJavaEncoding
(String javaEncoding, Connection conn)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CharsetMapping.java:587
↓ 11 callersMethodgetNativeLong
Get the value of a column in the current row as a Java long. @param columnIndex the first column is 1, the second is 2,... @return the co
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:3948
↓ 11 callersMethodgetObject
@see java.sql.CallableStatement#getObject(int)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CallableStatement.java:1464
↓ 11 callersMethodgetTableName
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Field.java:660
↓ 11 callersMethodgetURL
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MySQLConnection.java:126
↓ 11 callersMethodgetUseUsageAdvisor
Returns whether or not the driver advises of proper usage. @return the value of useUsageAdvisor
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:396
↓ 11 callersMethodinsertRow
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/StatementRegressionTest.java:4407
↓ 11 callersMethodisAfterLast
Returns true if we got the last element. @return true if after last row @throws SQLException if a database error occurs
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/RowData.java:123
↓ 11 callersMethodisBeforeFirst
Returns if iteration has not occured yet. @return true if before first row @throws SQLException if a database error occurs
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/RowData.java:132
↓ 11 callersMethodparse
()
toxkb/toxnet/cis2rdf.rb:72
↓ 11 callersMethodsetBoolean
(boolean value)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/fabric/xmlrpc/base/Value.java:111
↓ 11 callersMethodsetBufLength
(int bufLengthToSet)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Buffer.java:450
↓ 11 callersMethodsetBytesNoEscapeNoQuotes
(int parameterIndex, byte[] parameterAsBytes)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:3143
↓ 11 callersMethodsetNClob
(int parameterIndex, Reader reader)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:4928
↓ 11 callersMethodsetQueryTimeout
Sets the queryTimeout limit @param seconds - the new query timeout limit in seconds @exception SQLException if
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StatementImpl.java:2547
↓ 11 callersMethodsetRetrieveGeneratedKeys
(boolean flag)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:2300
↓ 11 callersMethodtoAsciiString
Returns the bytes as an ASCII String. @param buffer the bytes representing the string @return The ASCII String.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:1533
↓ 11 callersMethoduseAnsiQuotedIdentifiers
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MySQLConnection.java:196
↓ 10 callersMethodclearInputStream
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MysqlIO.java:892
↓ 10 callersMethoddumpAsHex
Dumps the given bytes to STDOUT as a hex dump (up to length bytes). @param byteBuffer the data to print as hex @param length th
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:200
↓ 10 callersMethodfastTimestampCreate
(boolean useGmtConversion, Calendar gmtCalIfNeeded, Calendar cal, int year, int month, int day, int hour,
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/TimeUtil.java:312
↓ 10 callersMethodfindColumn
(String columnName)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/regression/StatementRegressionTest.java:4139
↓ 10 callersMethodformatNanos
(int nanos, boolean serverSupportsFracSecs, boolean usingMicros)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/TimeUtil.java:444
↓ 10 callersMethodgetBytes
Get the value of a column in the current row as a Java byte array. <p> <b>Be warned</b> If the blob is huge, then you may run out of memory. </p> @p
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:1727
↓ 10 callersMethodgetCatalogIterator
(String catalogSpec)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/DatabaseMetaData.java:2049
↓ 10 callersMethodgetCharsetConverter
(String javaEncodingName)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MySQLConnection.java:68
↓ 10 callersMethodgetColumnDisplaySize
What is the column's normal maximum width in characters? @param column the first column is 1, the second is 2, etc. @return the maximum w
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetMetaData.java:200
↓ 10 callersMethodgetDetailLevel
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/ContentHandlerState.java:174
↓ 10 callersMethodgetHostOrganismResource
()
pdb/pdb2rdf-parser/src/main/java/com/dumontierlab/pdb2rdf/parser/EntitySourceGeneticallyManipulatedHandler.java:568
↓ 10 callersMethodgetHostname
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/fabric/Server.java:62
↓ 10 callersMethodgetIndexInfo
Get a description of a table's indices and statistics. They are ordered by NON_UNIQUE, TYPE, INDEX_NAME, and ORDINAL_POSITION. <P> Each index column d
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/DatabaseMetaData.java:3355
↓ 10 callersMethodgetInstance
(String className, Class<?>[] argTypes, Object[] args, ExceptionInterceptor exceptionInterceptor)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Util.java:357
↓ 10 callersMethodgetMysqlCharsetNameForCollationIndex
(Integer collationIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CharsetMapping.java:641
↓ 10 callersMethodgetNativeShort
Get the value of a column in the current row as a Java short. @param columnIndex the first column is 1, the second is 2,... @return the c
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:4073
↓ 10 callersMethodgetParseInfoCacheFactory
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:1343
↓ 10 callersMethodgetPropertiesFromTestsuiteUrl
Returns the properties that represent the default URL used for connections for all testcases. @return properties parsed from com.mysql.jdbc.testsuite
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/BaseTestCase.java:325
↓ 10 callersMethodgetString
@see java.sql.CallableStatement#getString(int)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CallableStatement.java:1653
↓ 10 callersMethodgetUtcCalendar
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MySQLConnection.java:130
↓ 10 callersMethodisBinary
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Field.java:680
↓ 10 callersMethodisFirst
Are we on the first row of the result set? @return true if on first row @throws SQLException if a database error occurs
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/RowData.java:162
↓ 10 callersMethodisReadInfoMsgEnabled
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MySQLConnection.java:148
↓ 10 callersMethodisReadOnly
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ReplicationConnection.java:492
↓ 10 callersMethodissueConversionViaParsingWarning
@param string @param mysqlType @param s
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:6175
↓ 10 callersMethodparse
()
lsr/lsr.php:105
↓ 10 callersMethodping
Detect if the connection is still good by sending a ping command to the server. @throws SQLException if the ping fails
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Connection.java:239
↓ 10 callersMethodretrieveSections
* Parse $gb_record_sections and return an array containing * the sections of type $aSectionType */
genbank/genbank.php:381
↓ 10 callersMethods2b
(String s, MySQLConnection conn)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/StringUtils.java:1696
↓ 10 callersMethodsetByte
Set a parameter to a Java byte value. The driver converts this to a SQL TINYINT value when it sends it to the database. @param parameterIndex
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/PreparedStatement.java:2973
↓ 10 callersMethodsetCharacterStream
@see java.sql.Clob#setCharacterStream(long)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Clob.java:156
↓ 10 callersMethodsetRowPositionValidity
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ResultSetImpl.java:790
↓ 10 callersMethodstackTraceToString
Converts a nested exception into a nicer message @param ex the exception to expand into a message. @return a message containing the excep
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Util.java:328
↓ 9 callersMethodcheckClosed
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Blob.java:358
↓ 9 callersMethodcheckInterfaceImplemented
(Method[] interfaceMethods, Class<?> implementingClass, Object invokeOn)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/simple/ConnectionTest.java:1527
↓ 9 callersMethodcheckWorkingWithResult
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/JDBC4MysqlSQLXML.java:141
↓ 9 callersFunctioncheck_var
(var, name, filename, logger)
linkedSPLs/LinkedSPLs-update/load-dailymed-spls/loadDailymedToSql.py:275
↓ 9 callersMethodclearParameters
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CallableStatement.java:693
↓ 9 callersMethodclearServerSelectionCriteria
Clear all the state that is used to determine which server to send queries to.
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/fabric/jdbc/FabricMySQLConnection.java:36
↓ 9 callersMethodclone
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/CallableStatement.java:121
↓ 9 callersMethoddecode
(byte[] in, int pos, int length)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/util/Base64Decoder.java:61
↓ 9 callersMethoddontDownHost
(String hostname)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/testsuite/UnreliableSocketFactory.java:109
↓ 9 callersMethodexecSQL
(StatementImpl callingStatement, String sql, int maxRows, Buffer packet, int resultSetType, int resultSetConcu
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/MySQLConnection.java:46
↓ 9 callersMethodfastSkipLenString
Skip over a length-encoded string @return The position past the end of the string
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/Buffer.java:155
↓ 9 callersMethodgetAllowMultiQueries
()
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ConnectionProperties.java:41
↓ 9 callersMethodgetBinaryStream
(int parameterIndex)
linkedSPLs/LinkedSPLs-update/lib/mysql-connector-java-5.1.33/src/com/mysql/jdbc/ParameterBindings.java:49
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