Converts a BlastSeqLoc list to an array of pointers, each pointing to an * element of the list passed in to this function and the last element points

Calculates entropy of an integer array * @param sv array to be analyzed [in] * @return the entropy */

Return true if length > 50 and the two most frequent letters * occur a total of more that 40% of the time. */

Frees the SSequence structure and the underlying structure * @param seq the object to be freed [in] */

* Given a set of target frequencies and two sets of character * probabilities for the true amino acids in the ARND alphabet, * calculate a scoring m

Checks SeqParameter struct for proteins, sets default values if not set. * @param sparamsp parameters to check [in] */

Calculates state array values * @param win the object to be analyzed [in] */

* Decreases the read counter. */