Functions — github.com/bbuchfink/diamond

CodeHub MCPcopy Create free account

hub / github.com/bbuchfink/diamond / functions

Functions3,919 in github.com/bbuchfink/diamond

⨍ Functions 3,919◇ Types & classes 804

MethodAsyncTargetBuffer

src/dp/swipe/target_iterator.h:182

MethodAsyncWriter

src/util/data_structures/deque.h:237

src/util/parallel/atomic.h:52

MethodBackwardCell

src/dp/swipe/stat_cell.h:109

MethodBackwardCell

src/dp/swipe/stat_cell.h:131

MethodBanded3FrameSwipeMatrix

src/dp/swipe/banded_3frame_swipe.cpp:86

MethodBanded3FrameSwipeTracebackMatrix

src/dp/swipe/banded_3frame_swipe.cpp:290

src/lib/ips4o/synchronization.hpp:52

MethodBin1_format

src/contrib/mcl/mcl.h:45

MethodBitVector

src/util/data_structures/bit_vector.h:30

src/data/blastdb/blastdb.cpp:41

FunctionBlastKarlinEtoS_simple

src/lib/blast/blastn_score.cpp:188

FunctionBlastMaskLocDup

src/lib/blast/blast_filter.cpp:212

FunctionBlastMaskLocFree

src/lib/blast/blast_filter.cpp:231

FunctionBlastScoreBlkNucleotideMatrixRead

src/lib/blast/blastn_score.cpp:491

FunctionBlastScoreBlkProteinMatrixRead

src/lib/blast/blastn_score.cpp:313

FunctionBlastSeqLocCombine

src/lib/blast/blast_filter.cpp:264

FunctionBlastSeqLocListReverse

Reverse elements in the list * @param head pointer to pointer to the head of the list. [in|out] * (this is not declared static so that it can be te

src/lib/blast/blast_filter.cpp:147

FunctionBlastSeqLocReverse

src/lib/blast/blast_filter.cpp:309

MethodBlastVolume

src/data/blastdb/pin.cpp:75

FunctionBlast_MaskTheResidues

src/lib/blast/blast_filter.cpp:318

FunctionBlast_MaskUnsupportedAA

src/lib/blast/blast_filter.cpp:347

FunctionBlast_MessageFree

src/lib/blast/blast_message.cpp:79

FunctionBlast_MessagePost

src/lib/blast/blast_message.cpp:135

MethodBlastn_Score

src/contrib/dna/build_score.cpp:30

src/data/block/block.cpp:42

MethodBlockJoiner

src/output/join_blocks.cpp:170

MethodBlockWrapper

src/data/block/block_wrapper.cpp:25

src/cluster/radixed_table.h:25

MethodBufferArray

src/cluster/file_array.h:168

MethodBufferStorage

src/lib/ips4o/memory.hpp:158

MethodBufferedWriter

src/search/seed_array/seed_array_impl.h:52

src/lib/ips4o/buffers.hpp:159

MethodBuildCallback

src/search/seed_array/seed_array_impl.h:96

src/stats/cbs.cpp:33

MethodCBSBuffer

src/dp/swipe/swipe.h:36

MethodCBSBuffer

src/dp/swipe/swipe.h:44

src/search/seed_array/seed_histogram.cpp:51

MethodCarryOver

src/util/data_structures/queue.h:148

src/cluster/cluster.h:130

src/contrib/dna/chain.h:85

MethodChainingParameters

src/contrib/dna/chain.h:41

MethodCharDelimiter

src/util/string/tokenizer.h:41

MethodCharRepresentation

src/basic/value.cpp:26

MethodCharTokenizer

src/data/fasta/parser.h:68

src/data/sequence_file.h:30

src/contrib/dna/alignment.h:46

MethodCigar_short

src/contrib/dna/extension.h:60

MethodClassifier

src/lib/ips4o/classifier.hpp:60

MethodClustering_format

src/contrib/mcl/clustering_format.cpp:36

MethodColumnIterator

src/dp/swipe/banded_3frame_swipe.cpp:49

MethodColumnIterator

src/dp/swipe/banded_3frame_swipe.cpp:123

MethodColumnIterator

src/dp/swipe/full_matrix.h:31

MethodColumnIterator

src/dp/swipe/full_matrix.h:111

MethodColumnIterator

src/dp/swipe/banded_matrix.h:36

MethodColumnIterator

src/dp/swipe/banded_matrix.h:150

MethodColumnIterator

src/dp/swipe/banded_matrix.h:320

MethodColumn_iterator

src/dp/scalar/smith_waterman.cpp:123

MethodCompactArray

src/legacy/dmnd/compact_array.h:30

MethodCompressedBuffer

src/util/io/compressed_buffer.cpp:31

src/basic/config.h:416

src/basic/config.cpp:161

MethodConstIterator

src/data/string_set.h:191

MethodConstIterator

src/basic/packed_transcript.h:104

MethodConstIterator

src/util/data_structures/sparse_flat_array.h:93

MethodConstIterator

src/util/data_structures/flat_array.h:117

MethodContiguousSeedIterator

src/search/seed_array/seed_iterator.h:206

MethodContiguousSeedIterator

src/search/seed_array/seed_iterator.h:242

MethodCountIdentities

src/dp/ungapped_align.cpp:131

FunctionCountingSemaphore

src/util/parallel/semaphore.h:77

MethodCountingSemaphore

src/util/parallel/semaphore.h:156

MethodCutoffTable

src/util/scores/cutoff_table.h:28

MethodCutoffTable2D

src/util/scores/cutoff_table.h:51

src/legacy/daa/daa_file.h:96

MethodDAAFormat

src/legacy/daa/daa_record.cpp:26

MethodDAA_header1

src/legacy/daa/daa_file.h:33

MethodDAA_header2

src/legacy/daa/daa_write.cpp:120

MethodDAA_header2

src/legacy/daa/daa_file.h:42

MethodDAA_query_record

src/legacy/daa/daa_record.h:103

src/util/algo/algo.h:95

MethodDatabaseFile

src/legacy/dmnd/dmnd.cpp:138

src/data/sequence_file.h:50

MethodDegreePartition

src/util/algo/degree_partition.h:37

src/util/data_structures/deque.h:38

MethodDiagonalNode

src/chaining/diag_graph.h:30

MethodDiagonalSegment

src/util/geo/diagonal_segment.h:25

MethodDiagonalSegmentT

src/util/geo/diagonal_segment.h:158

MethodDisjointSet

src/util/data_structures/disjoint_set.h:27

MethodDoubleArray

src/util/data_structures/double_array.h:31

src/dp/scalar/smith_waterman.cpp:179

src/dp/dp.h:150

MethodDummyIdMask

src/dp/swipe/stat_cell.h:34

MethodDummyRowCounter

src/dp/swipe/cell_update.h:26

MethodDynProgProb

src/lib/alp/njn_dynprogprob.hpp:67

MethodDynProgProbLim

src/lib/alp/njn_dynprogproblim.hpp:67

MethodDynamicRecordReader

src/legacy/dmnd/record_reader.h:28

src/tools/greedy_vertex_cover.cpp:43

src/output/output_format.h:303

← previous next →1,701–1,800 of 3,919, ranked by callers