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Functions3,919 in github.com/bbuchfink/diamond

⨍ Functions 3,919◇ Types & classes 804

↓ 1 callersMethodmax_query

src/contrib/dna/extension.h:53

↓ 1 callersMethodmax_size

src/util/memory/alignment.h:92

↓ 1 callersMethodmax_table_size

src/data/seed_set.cpp:144

↓ 1 callersMethodmax_target

src/contrib/dna/extension.h:55

↓ 1 callersFunctionmerge

src/cluster/multinode/output.cpp:185

↓ 1 callersFunctionmerge_daa

src/legacy/daa/merge.cpp:67

↓ 1 callersFunctionmerge_hits

src/align/global_ranking/table.cpp:128

↓ 1 callersFunctionmerge_hsps

src/chaining/greedy_align.cpp:461

↓ 1 callersFunctionmerge_sort

src/util/algo/merge_sort.h:27

↓ 1 callersMethodmin_orf_len

src/basic/config.h:419

↓ 1 callersMethodmin_range_len

src/basic/hssp.cpp:406

↓ 1 callersFunctionminimum

src/lib/alp/njn_integer.hpp:46

↓ 1 callersFunctionmismatch_est

src/dp/swipe/swipe_wrapper.cpp:357

↓ 1 callersMethodmismatch_penalty

src/legacy/daa/daa_file.h:155

↓ 1 callersMethodmove

src/util/data_structures/deque.h:79

↓ 1 callersFunctionmul

src/util/simd/vector8_avx2.h:120

↓ 1 callersFunctionnatsToBits

src/lib/alp/njn_function.hpp:81

↓ 1 callersFunctionnatsToHartleys

src/lib/alp/njn_function.hpp:83

↓ 1 callersFunctionneedleman_wunsch

src/dp/scalar/smith_waterman.cpp:205

↓ 1 callersMethodnegative_list

src/util/data_structures/bit_vector.h:117

↓ 1 callersMethodnet_cells

src/dp/swipe/anchored.h:172

↓ 1 callersMethodnext

src/util/data_structures/flat_array.h:61

↓ 1 callersMethodnext_block

src/dp/swipe/anchored.h:117

↓ 1 callersMethodnext_round

src/cluster/multinode.h:87

↓ 1 callersMethodoffset_oids

src/data/block/block.cpp:215

↓ 1 callersMethodoid

src/data/sequence_file.cpp:638

↓ 1 callersMethodone_count

src/util/data_structures/bit_vector.h:82

↓ 1 callersFunctionopen_tmp_file

src/util/io/file.cpp:61

↓ 1 callersMethodoperator()

src/masking/masking.cpp:165

↓ 1 callersMethodoperator*

src/util/data_structures/double_array.h:57

↓ 1 callersMethodoperator*

src/util/algo/join_result.h:32

↓ 1 callersMethodoperator++

src/util/util.h:275

↓ 1 callersMethodoperator++

src/util/data_structures/deque.h:143

↓ 1 callersMethodoperator[]

src/data/string_set.h:233

↓ 1 callersMethodoutput_header

src/output/blast_tab_format.cpp:790

↓ 1 callersFunctionoutput_oids

src/cluster/multinode/output.cpp:41

↓ 1 callersMethodoutput_range

src/basic/config.h:432

↓ 1 callersFunctionoutput_round1

src/cluster/multinode/output.cpp:124

↓ 1 callersFunctionoutput_round2

src/cluster/multinode/output.cpp:146

↓ 1 callersMethodoverlapInQuery

src/contrib/dna/chain.h:87

↓ 1 callersMethodoverlap_find_all

src/lib/interval_tree/interval_tree.hpp:958

↓ 1 callersFunctionoverlaps

* Returns whether the intervals overlap. * For when both intervals are closed. */

src/lib/interval_tree/interval_tree.hpp:96

↓ 1 callersFunctionpage_size

* Determines the operating system's page allocation granularity. * * On the first call to this function, it invokes the operating system specific sy

src/lib/mio/page.hpp:53

↓ 1 callersFunctionpair_from_index

src/tools/composition_matrix.cpp:61

↓ 1 callersFunctionpairwise

src/run/tools.cpp:202

↓ 1 callersMethodparallelPrimary

src/lib/ips4o/parallel.hpp:91

↓ 1 callersMethodparallelSecondary

src/lib/ips4o/parallel.hpp:74

↓ 1 callersFunctionparent_dir_posix

src/util/system/system.cpp:376

↓ 1 callersFunctionparse_length

src/data/blastdb/asn1.cpp:69

↓ 1 callersFunctionparse_tag

src/data/blastdb/asn1.cpp:34

↓ 1 callersFunctionpartition_table

src/util/algo/algo.h:62

↓ 1 callersMethodpatterns

src/basic/shape_config.h:59

↓ 1 callersMethodpeek

src/contrib/mcl/recursive_parser.h:33

↓ 1 callersMethodpoll_size

src/util/parallel/filestack.cpp:444

↓ 1 callersMethodprint_documentation

src/util/command_line_parser.cpp:126

↓ 1 callersFunctionprint_escaped_until

src/util/escape_sequences.h:74

↓ 1 callersMethodprint_help

src/util/command_line_parser.cpp:109

↓ 1 callersMethodprint_info

src/legacy/dmnd/dmnd.cpp:638

↓ 1 callersFunctionprint_lineage

src/output/blast_tab_format.cpp:149

↓ 1 callersMethodprint_match

src/contrib/mcl/clustering_format.cpp:27

↓ 1 callersFunctionprint_md

src/output/sam_format.cpp:30

↓ 1 callersMethodprint_stats

src/contrib/mcl/mcl.cpp:66

↓ 1 callersFunctionprint_staxids

src/output/blast_tab_format.cpp:127

↓ 1 callersMethodprogram_build_version

src/data/blastdb/blastdb.cpp:310

↓ 1 callersMethodprune

src/chaining/greedy_align.cpp:100

↓ 1 callersFunctionpsnip_builtin_clzl

src/lib/psnip/builtin.h:501

↓ 1 callersFunctionpsnip_builtin_ctzl

src/lib/psnip/builtin.h:654

↓ 1 callersFunctionpsnip_builtin_ffsl

src/lib/psnip/builtin.h:403

↓ 1 callersMethodptr

src/basic/packed_transcript.h:155

↓ 1 callersMethodptr

src/util/string/tokenizer.h:122

↓ 1 callersMethodpush

* Pushes new element to buffer. */

src/lib/ips4o/buffers.hpp:201

↓ 1 callersMethodpush

src/search/seed_array/seed_array_impl.h:64

↓ 1 callersMethodpush

src/search/seed_array/seed_array_extra.cpp:56

↓ 1 callersMethodpush_back_reversed

src/util/data_structures/array.h:92

↓ 1 callersMethodpush_front

src/masking/def.h:77

↓ 1 callersFunctionpush_seq

src/legacy/dmnd/dmnd.cpp:217

↓ 1 callersMethodquery_count

src/search/hamming/hit_field.h:67

↓ 1 callersFunctionquery_data

src/search/stage2.h:65

↓ 1 callersMethodquery_extension_distance

src/contrib/dna/alignment.h:64

↓ 1 callersMethodquery_in_strand_range

src/util/geo/diagonal_segment.h:212

↓ 1 callersMethodquery_range_enveloped_by

src/basic/hssp.cpp:246

↓ 1 callersMethodquery_records

src/legacy/daa/daa_file.h:158

↓ 1 callersMethodquery_seq

src/align/legacy/query_mapper.h:167

↓ 1 callersFunctionraise_open_files_limit

src/util/system/system.cpp:81

↓ 1 callersFunctionrandom_seqs

src/run/tools.cpp:61

↓ 1 callersFunctionrandom_suffix

src/util/system/system.cpp:507

↓ 1 callersMethodrank

src/data/sequence_file.cpp:917

↓ 1 callersFunctionranking_list

src/align/global_ranking/global_ranking.cpp:46

↓ 1 callersFunctionranking_terminate

src/align/extend.cpp:111

↓ 1 callersFunctionras_balance

src/stats/matrix_adjust/kernel_avx2.h:168

↓ 1 callersFunctionras_balance

src/stats/matrix_adjust/kernel_arm64.h:167

↓ 1 callersFunctionras_balance

src/stats/matrix_adjust/kernel_sse41.h:192

↓ 1 callersMethodraw_begin

src/legacy/daa/daa_record.h:114

↓ 1 callersFunctionread_fasta_record

src/data/fasta/parser.h:206

↓ 1 callersFunctionread_option

src/util/command_line_parser.h:33

↓ 1 callersMethodread_raw

src/util/io/file.cpp:366

↓ 1 callersMethodread_record

src/data/fasta/parser.h:87

↓ 1 callersMethodread_text_mt

src/util/io/read_text_mt.cpp:38

↓ 1 callersMethodread_to_fasta_record_end

src/util/io/file.cpp:374

↓ 1 callersFunctionrealign_block_pair

src/cluster/realign.cpp:109

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