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Types & classes84 in github.com/allenai/SciREX

↓ 9 callersClassToken
dygiepp/dygie/data/dataset_readers/data_structures.py:159
↓ 7 callersClassSpan
dygiepp/scripts/data/genia/genia_xml_to_inline_sutd.py:53
↓ 6 callersClassMultiLabelField
A `MultiLabelField` is an extension of the :class:`LabelField` that allows for multiple labels. It is particularly useful in multi-label clas
scirex/data/dataset_readers/multi_label_field.py:14
↓ 5 callersClassAnnotation
dygiepp/scripts/data/genia/genia_xml_to_inline_sutd.py:80
↓ 5 callersClassBinaryThresholdF1
F1 measure optimised for validation set
scirex/metrics/thresholding_f1_metric.py:12
↓ 5 callersClassMissingDict
If key isn't there, returns default value. Like defaultdict, but it doesn't store the missing keys that were queried.
dygiepp/dygie/data/dataset_readers/ie_json.py:29
↓ 5 callersClassSpan
dygiepp/dygie/data/dataset_readers/data_structures.py:136
↓ 3 callersClassEntity
dygiepp/scripts/data/ace-event/parse_ace_event.py:61
↓ 3 callersClassNER
dygiepp/dygie/data/dataset_readers/data_structures.py:196
↓ 3 callersClassPruner
This module scores and prunes items in a list using a parameterised scoring function and a threshold. Parameters ---------- scor
dygiepp/dygie/models/entity_beam_pruner.py:27
↓ 3 callersClassRelation
dygiepp/scripts/data/ace-event/parse_ace_event.py:77
↓ 2 callersClassAdjacencyFieldAssym
There are cases where we need to express adjacency relations between elements in two different fields - for instance a TextField and a SpanFi
dygiepp/dygie/data/fields/adjacency_field_assym.py:16
↓ 2 callersClassCluster
dygiepp/dygie/data/dataset_readers/data_structures.py:281
↓ 2 callersClassDoc
dygiepp/scripts/data/ace-event/parse_ace_event.py:209
↓ 2 callersClassEvents
dygiepp/dygie/data/dataset_readers/data_structures.py:245
↓ 2 callersClassRelation
dygiepp/dygie/data/dataset_readers/data_structures.py:210
↓ 2 callersClassToken
dygiepp/scripts/data/genia/genia_xml_to_inline_sutd.py:29
↓ 1 callersClassArgument
dygiepp/dygie/data/dataset_readers/data_structures.py:178
↓ 1 callersClassArgumentStats
Compute the fraction of predicted event arguments that are associated with multiple triggers.
dygiepp/dygie/training/event_metrics.py:103
↓ 1 callersClassArticle
dygiepp/scripts/data/genia/genia_xml_to_inline_sutd.py:374
↓ 1 callersClassBatchIterator
For multi-task IE, we want the training instances in a batch to be successive sentences from the same document. Otherwise the coreference lab
dygiepp/dygie/data/iterators/batch_iterator.py:17
↓ 1 callersClassCandidateRecall
Computes relation candidate recall.
dygiepp/dygie/training/relation_metrics.py:43
↓ 1 callersClassClusterMember
dygiepp/dygie/data/dataset_readers/data_structures.py:304
↓ 1 callersClassCoref
Represents a single coreference.
dygiepp/scripts/data/genia/merge_coref.py:55
↓ 1 callersClassCorefs
Holds all corefs and represents relations between them.
dygiepp/scripts/data/genia/merge_coref.py:109
↓ 1 callersClassDocument
dygiepp/dygie/data/dataset_readers/data_structures.py:32
↓ 1 callersClassDocument
dygiepp/scripts/data/ace-event/parse_ace_event.py:266
↓ 1 callersClassDocumentIterator
For multi-task IE, we want the training instances in a batch to be successive sentences from the same document. Otherwise the coreference lab
dygiepp/dygie/data/iterators/document_iterator.py:15
↓ 1 callersClassEntry
dygiepp/scripts/data/ace-event/parse_ace_event.py:144
↓ 1 callersClassEvent
dygiepp/dygie/data/dataset_readers/data_structures.py:224
↓ 1 callersClassEvent
dygiepp/scripts/data/ace-event/parse_ace_event.py:111
↓ 1 callersClassEventArgument
dygiepp/scripts/data/ace-event/parse_ace_event.py:105
↓ 1 callersClassEventMetrics
Computes precision, recall, and micro-averaged F1 for triggers and arguments.
dygiepp/dygie/training/event_metrics.py:25
↓ 1 callersClassEventTrigger
dygiepp/scripts/data/ace-event/parse_ace_event.py:99
↓ 1 callersClassGrobidBibliographyEntry
scirex_utilities/preprocessing/grobid_util.py:6
↓ 1 callersClassIEJsonReader
Reads a single JSON-formatted file. This is the same file format as used in the scierc, but is preprocessed
dygiepp/dygie/data/dataset_readers/ie_json.py:121
↓ 1 callersClassMultiTokenTrigerException
dygiepp/scripts/data/ace-event/parse_ace_event.py:26
↓ 1 callersClassNAryRelationMetrics
scirex/metrics/n_ary_relation_metrics.py:10
↓ 1 callersClassNERMetrics
Computes precision, recall, and micro-averaged F1 from a list of predicted and gold labels.
dygiepp/dygie/training/ner_metrics.py:8
↓ 1 callersClassOneHotEncoder
A one-hot encoder class. Only a module in the trivial sense.
dygiepp/dygie/models/one_hot.py:16
↓ 1 callersClassRelationArgument
dygiepp/scripts/data/ace-event/parse_ace_event.py:71
↓ 1 callersClassRelationMetrics
Computes precision, recall, and micro-averaged F1 from a list of predicted and gold spans.
dygiepp/dygie/training/relation_metrics.py:8
↓ 1 callersClassResult
scirex_utilities/result_from_pwc_table.py:8
↓ 1 callersClassScirexFullReader
scirex/data/dataset_readers/scirex_full_reader.py:122
↓ 1 callersClassSection
scirex_utilities/preprocessing/grobid_util.py:49
↓ 1 callersClassSentence
dygiepp/dygie/data/dataset_readers/data_structures.py:83
↓ 1 callersClassSentence
dygiepp/scripts/data/genia/genia_xml_to_inline_sutd.py:130
↓ 1 callersClassSpanBasedF1Measure
Copied (Span Based F1 Measure from allennlp)
scirex/metrics/span_f1_metrics.py:22
↓ 1 callersClassTestDyGIE
dygiepp/dygie/tests/scripts/m2.py:14
↓ 1 callersClassTrigger
dygiepp/dygie/data/dataset_readers/data_structures.py:169
↓ 1 callersClassWhitespaceTokenizer
scirex_utilities/convert_brat_annotations_to_json.py:22
ClassAceException
dygiepp/scripts/data/ace-event/parse_ace_event.py:18
ClassBatchIterator
scirex/data/iterators/batch_iterator.py:20
ClassBertCoreference
scirex/models/coreference/bert_coreference.py:15
ClassBucketSampleIterator
An iterator which by default, pads batches with respect to the maximum input lengths `per batch`. Additionally, you can provide a list of fie
scirex/data/iterators/sampled_iterator.py:45
ClassCorefResolver
TODO(dwadden) document correctly. Parameters ---------- mention_feedforward : ``FeedForward`` This feedforward network is ap
dygiepp/dygie/models/coref.py:23
ClassCrossSentenceException
dygiepp/scripts/data/ace-event/parse_ace_event.py:22
ClassDataset
dygiepp/dygie/data/dataset_readers/data_structures.py:19
ClassDoctaetModel
scirex/models/doctaet.py:15
ClassDoctaetReader
scirex/data/dataset_readers/doctaet_reader.py:57
ClassDummy
Placeholder class to avoid wasting model parameters on stuff that we don't use.
dygiepp/dygie/models/dummy.py:1
ClassDyGIE
TODO(dwadden) document me. Parameters ---------- vocab : ``Vocabulary`` text_field_embedder : ``TextFieldEmbedder`` Used
dygiepp/dygie/models/dygie.py:28
ClassEventExtractor
Event extraction for DyGIE.
dygiepp/dygie/models/events.py:34
ClassGELU
scirex/models/gelu.py:5
ClassJointMetrics
Right now, counts how many event predictions are valid. I.e. the trigger / argument and argument / ner labels are compatible.
dygiepp/dygie/training/joint_metrics.py:13
ClassMultiTaskIterator
To use when we're co-training on Ontonotes and ACE.
dygiepp/dygie/data/iterators/multitask_iterator.py:24
ClassNERTagger
Named entity recognition module of DyGIE model. Parameters ---------- mention_feedforward : ``FeedForward`` This feedforward
dygiepp/dygie/models/ner.py:17
ClassNERTagger
scirex/models/ner/ner_crf_tagger.py:16
ClassNumpyEncoder
scirex_utilities/json_utilities.py:4
ClassPretrainedBertEmbedder
Parameters ---------- pretrained_model: ``str`` Either the name of the pretrained model to use (e.g. 'bert-base-uncased'),
dygiepp/dygie/models/bert_token_embedder_modified.py:8
ClassPretrainedBertEmbedder
Parameters ---------- pretrained_model: ``str`` Either the name of the pretrained model to use (e.g. 'bert-base-uncased'),
scirex/models/bert_token_embedder_modified.py:8
ClassRelationExtractor
Relation extraction module of DyGIE model.
dygiepp/dygie/models/relation.py:24
ClassRelationExtractor
scirex/models/relations/entity_relation.py:22
ClassRelationExtractor
scirex/models/relations/mention_binary_relation.py:17
ClassScirexCoreferenceEvalReader
scirex/data/dataset_readers/coreference_eval_reader.py:17
ClassScirexCoreferenceTrainReader
scirex/data/dataset_readers/coreference_train_reader.py:18
ClassScirexModel
scirex/models/scirex_model.py:25
ClassSpanClassifier
scirex/models/span_classifiers/span_classifier.py:20
ClassSpanProp
dygiepp/dygie/models/span_prop.py:19
ClassTestCoref
dygiepp/dygie/tests/models/coref_test.py:14
ClassTestDyGIE
dygiepp/dygie/tests/models/dygie_test.py:10
ClassTestIEJsonReader
Read in data and do some spot-checks.
dygiepp/dygie/tests/data/ie_json_test.py:15
ClassTestRelation
dygiepp/dygie/tests/models/relation_test.py:16
ClassTokSpan
dygiepp/scripts/data/ace-event/parse_ace_event.py:35