Function: esl_buffer_Close() * Synopsis: Close an input buffer. * Incept: SRE, Mon Feb 14 09:09:04 2011 [Janelia] * * Purpose: Close the in

Function: esl_memspn() * Synopsis: Finds length of prefix consisting only of given chars * * Purpose: For line <p> of length <n>, return the le

Function: esl_opt_ArgNumber() * Synopsis: Returns number of command line arguments. * * Purpose: Returns the number of command line arguments.

Operation access !\brief Returns a copy of the custom unary operation. // // \return A copy of the custom unary operation. */

Function: p7_gmx_GrowTo() * Synopsis: Assure that DP matrix is big enough. * * Purpose: Assures that a DP matrix <gx> is allocated *

Function: p7_oprofile_Convert() * Synopsis: Converts standard profile to an optimized one. * Incept: SRE, Mon Nov 26 07:38:57 2007 [Janelia] *

Result type

Type tag

Type tag

Type of the adapted matrix

Makes a failed assertion result.

Starts capturing stdout.

Stops capturing stdout and returns the captured string.

Convenience function for accessing the global UnitTest implementation object.

Computes the bitwise OR of the 128-bit value in a and the 128-bit value in b. r := a | b https://msdn.microsoft.com/en-us/library/vstudio/ew8ty0db(v

Function: esl_memstrpfx() * Synopsis: Return TRUE if memory line starts with string. * * Purpose: Compare line <p> of length <n> to a NUL-termi

Compile time row arguments

Function: p7_omx_Create() * Synopsis: Create an optimized dynamic programming matrix. * Incept: SRE, Tue Nov 27 08:48:20 2007 [Janelia] * * P

Function: p7_omx_Create() * Synopsis: Create an optimized dynamic programming matrix. * Incept: ML, Fri Mar 12 10:28:53 2021 [Heidelberg] * *

Function: p7_pipeline_Destroy() * Synopsis: Free a <P7_PIPELINE> object. * * Purpose: Free a <P7_PIPELINE> object. */

Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */

Value function !\brief Access to the current value of the sparse submatrix element. // // \return The current value of the sparse submatri

Creates the implicit sequence if there isn't one.

Returns true if and only if call_count calls will satisfy this cardinality.

Returns true if and only if Google Test should use colors in the output.

Type tag

Type tag

Function: p7_gmx_Dump() * Synopsis: Dump a DP matrix to a stream, for diagnostics. * * Purpose: Dump matrix <gx> to stream <fp> for diagnostics

Function: p7_omx_Destroy() * Synopsis: Frees an optimized DP matrix. * Incept: SRE, Tue Nov 27 09:11:42 2007 [Janelia] * * Purpose: Frees o

Function: p7_omx_Destroy() * Synopsis: Frees an optimized DP matrix. * Incept: SRE, Tue Nov 27 09:11:42 2007 [Janelia] * * Purpose: Frees o

Resizes the buffer. If T is a POD type new elements are not initialized.

! \fn void SwapEndian_32(int32_t& x) \brief swaps endianness of signed 32-bit integer, in place */

Alignment flag

Function: esl_msa_Compare() * Synopsis: Compare two MSAs for equality. * * Purpose: Returns <eslOK> if the mandatory and optional contents *

Determine sign of this APInt. This tests the high bit of this APInt to determine if it is set. \returns true if this APInt is negative, false otherw

Function: p7_trace_Create() * Synopsis: Allocates a (growable, reusable) traceback. * * Purpose: Allocates a traceback. * * Tra

Multiply packed double-precision (64-bit) floating-point elements in a and b, and store the results in dst. https://software.intel.com/sites/landingpa

Sets the 16 signed 8-bit integer values to b. r0 := b r1 := b ... r15 := b https://msdn.microsoft.com/en-us/library/6e14xhyf(v=vs.100).aspx

Drop the first n elements.

Compile time submatrix arguments

Function: esl_getopts_Create() * Synopsis: Create a new <ESL_GETOPTS> object. * * Purpose: Creates an <ESL_GETOPTS> object, given the *

Function: esl_sprintf() * Synopsis: Dynamic allocation version of sprintf(). * * Purpose: Like ANSI C's <sprintf()>, except the string *

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Compile time row arguments

Compile time column arguments

--------------------------------------------------------------- @brief returns if a parameter is required */