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Functions40,422 in github.com/ablab/spades

⨍ Functions 40,422◇ Types & classes 24,500↳ Endpoints 21
↓ 50 callersMethodget
ext/src/llvm/JSON.cpp:23
↓ 50 callersMethodmatch
src/common/hmm/hmmmatcher.cpp:60
↓ 50 callersMethodmessage
ext/src/llvm/Error.cpp:32
↓ 50 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/SMatReduceExpr.h:1130
↓ 50 callersMethodstore
Compile time subvector arguments
ext/include/blaze/blaze/math/views/subvector/Dense.h:1979
↓ 50 callersMethodstore
Compile time column arguments
ext/include/blaze/blaze/math/views/column/Dense.h:1587
↓ 50 callersMethodwidth
ext/include/cppformat/format.h:1030
↓ 49 callersFunctionAnyOf
ext/src/googletest/googlemock/test/gmock-matchers-arithmetic_test.cc:1672
↓ 49 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatTDMatSubExpr.h:247
↓ 49 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatTDMatAddExpr.h:248
↓ 49 callersMethodconjugate
src/test/debruijn/paired_info_test.cpp:40
↓ 49 callersFunctioninteger
ext/include/clipp/clipp.h:2500
↓ 49 callersMethodlib_count
src/common/library/library.hpp:338
↓ 49 callersFunctionp7_GForward
Function: p7_GForward() * Synopsis: The Forward algorithm. * * Purpose: The Forward dynamic programming algorithm. * * Given a di
ext/src/hmmer/src/generic_fwdback.c:47
↓ 49 callersMethodpush_back
src/projects/ionhammer/kmer_data.hpp:75
↓ 49 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatTDMatSubExpr.h:237
↓ 49 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatTDMatAddExpr.h:238
↓ 49 callersMethodsize
src/common/io/reads/read.hpp:73
↓ 49 callersMethodsize
src/common/alignment/kmer_map.hpp:150
↓ 49 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/SMatSVecMultExpr.h:210
↓ 49 callersMethodsize
Compile time band arguments
ext/include/blaze/blaze/math/views/band/Dense.h:1490
↓ 49 callersMethodvalue
ext/include/llvm/Support/YAMLTraits.h:1517
↓ 48 callersFunctionXXH_readLE64
ext/include/xxh/xxhash.h:3295
↓ 48 callersFunction_mmxxx_store_si
ext/src/spoa/src/simd_alignment_engine_implementation.hpp:72
↓ 48 callersFunctionabs
Returns the absolute value of a Float value. This must be defined in the same namespace as Float.
ext/src/googletest/googlemock/test/gmock-matchers-arithmetic_test.cc:566
↓ 48 callersMethodcount
src/projects/spades/series_analysis.cpp:126
↓ 48 callersFunctiondrand48
ext/src/samtools/bam_aux.c:213
↓ 48 callersFunctionerr_printf
ext/src/bwa/utils.c:176
↓ 48 callersMethodfinalize
Compile time row arguments
ext/include/blaze/blaze/math/views/rows/Sparse.h:1430
↓ 48 callersFunctionget
src/test/adt/loser_tree_test.cpp:18
↓ 48 callersFunctionisalpha
ext/include/clipp/clipp.h:161
↓ 48 callersFunctionloada
!\brief Loads a vector of 'float' values. // \ingroup simd // // \param address The first 'float' value to be loaded. // \return The loaded vector of
ext/include/blaze/blaze/math/simd/Loada.h:360
↓ 48 callersFunctionmap
Type of the custom operation
ext/include/blaze/blaze/math/expressions/SVecMapExpr.h:861
↓ 48 callersFunctionmap
Type of the custom operation
ext/include/blaze/blaze/math/expressions/SMatMapExpr.h:973
↓ 48 callersMethodsize
ext/include/tsl/array-hash/array_map.h:162
↓ 48 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/TSMatDVecMultExpr.h:240
↓ 48 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/DMatReduceExpr.h:1138
↓ 48 callersFunctiontrmm
Type of the scalar factor
ext/include/blaze/blaze/math/blas/trmm.h:106
↓ 47 callersMethodAsStdFunction
ext/src/googletest/googlemock/include/gmock/gmock-spec-builders.h:1911
↓ 47 callersFunctionRUN_ALL_TESTS
ext/src/googletest/googletest/include/gtest/gtest.h:2334
↓ 47 callersFunctionRecordProperty
ext/src/googletest/googletest/include/gtest/gtest.h:303
↓ 47 callersFunctioncnull
ext/include/boost/tuple/detail/tuple_basic.hpp:59
↓ 47 callersFunctionerror
ext/src/samtools/misc/bamcheck.c:1295
↓ 47 callersFunctionerror
ext/include/samtools/misc/bamcheck.c:1295
↓ 47 callersFunctionesl_msafile_Read
Function: esl_msafile_Read() * Synopsis: Read next MSA from input. * * Purpose: Reads the next MSA from open MSA input <afp>, and return it in
ext/src/easel/esl_msafile.c:996
↓ 47 callersFunctionis_nucl
WARNING: These functions were carefully crafted for speed Change only if you know what you're doing
src/common/sequence/nucl.hpp:48
↓ 47 callersFunctionpointer
ext/src/googletest/googletest/include/gtest/internal/gtest-port.h:1781
↓ 47 callersFunctionref_compare
ext/include/boost/bind/bind.hpp:67
↓ 47 callersMethodsize
src/common/kmer_index/kmer_mph/kmer_index.hpp:84
↓ 47 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/DMatSVecMultExpr.h:260
↓ 47 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/TDVecTSMatMultExpr.h:227
↓ 47 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/TSVecTDMatMultExpr.h:258
↓ 47 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/SMatDVecMultExpr.h:230
↓ 47 callersMethodsize
Compile time column arguments
ext/include/blaze/blaze/math/views/column/Sparse.h:1272
↓ 47 callersMethodsize
Compile time row arguments
ext/include/blaze/blaze/math/views/row/Sparse.h:1272
↓ 47 callersFunctionsubmatrix
Optional submatrix arguments
ext/include/blaze/blaze/math/views/Submatrix.h:181
↓ 46 callersFunctionLe
Creates a polymorphic matcher that matches a 2-tuple where the first field <= the second field.
ext/src/googletest/googlemock/include/gmock/gmock-matchers.h:4864
↓ 46 callersFunctionScanBasicGraph
src/test/debruijn/graphio.cpp:266
↓ 46 callersFunction_mm_add_epi32
Adds the 4 signed or unsigned 32-bit integers in a to the 4 signed or unsigned 32-bit integers in b. r0 := a0 + b0 r1 := a1 + b1 r2 := a2 + b2 r3 :=
ext/include/sse2neon/sse2neon.h:2969
↓ 46 callersFunctionband
Optional band arguments
ext/include/blaze/blaze/math/views/Band.h:140
↓ 46 callersFunctionesl_vec_FSet
ext/src/easel/esl_vectorops.c:36
↓ 46 callersMethodload
Type tag
ext/include/blaze/blaze/math/dense/DynamicVector.h:2094
↓ 46 callersFunctionnucl
* 0123acgtACGT -> ACGT * @param char c is 'A/a/0', 'C/c/1', 'G/g/2', 'T/t/3' * @return 'A/a/0' => 'A', 'C/c/1' => 'C', 'G/g/2' => 'G', 'T/t/3' => 'T
src/common/sequence/nucl.hpp:108
↓ 46 callersMethodsize
ext/include/llvm/ADT/SmallSet.h:159
↓ 46 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/TSVecDMatMultExpr.h:302
↓ 46 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/TDMatSVecMultExpr.h:301
↓ 46 callersMethodsize
Remaining element indices
ext/include/blaze/blaze/math/views/elements/ElementsData.h:233
↓ 46 callersFunctionstorea
Type of the operand
ext/include/blaze/blaze/math/simd/Storea.h:368
↓ 45 callersFunctionElementsAreArray
ext/src/googletest/googlemock/include/gmock/gmock-matchers.h:4378
↓ 45 callersFunction_mm_xor_si128
Computes the bitwise XOR of the 128-bit value in a and the 128-bit value in b. https://msdn.microsoft.com/en-us/library/fzt08www(v=vs.100).aspx
ext/include/sse2neon/sse2neon.h:6443
↓ 45 callersMethodback
src/projects/online_vis/history.hpp:48
↓ 45 callersMethodband
! \cond BLAZE_INTERNAL */ !\brief Returns the index of the band of the underlying dense matrix. // // \return The index of the band. */
ext/include/blaze/blaze/math/views/band/BandData.h:170
↓ 45 callersFunctionerror
=========================================================================== * Display error message and exit */
ext/src/zlib-ng/test/example.c:48
↓ 45 callersFunctionesl_memtok
Function: esl_memtok() * Synopsis: Get next delimited token from a line. * * Purpose: Given references to a line and its length, <*p> and <*n>,
ext/src/easel/esl_mem.c:525
↓ 45 callersMethodfilter
src/common/kmer_index/ph_map/storing_traits.hpp:86
↓ 45 callersMethodfront
src/projects/online_vis/history.hpp:44
↓ 45 callersMethodmapOptional
ext/include/llvm/Support/YAMLTraits.h:862
↓ 45 callersFunctionnlopt_stop_forced
ext/src/nlopt/util/stop.c:104
↓ 45 callersFunctionp7_tophits_Destroy
Function: p7_tophits_Destroy() * Synopsis: Frees a hit list. */
ext/src/hmmer/src/p7_tophits.c:685
↓ 45 callersFunctionp7_trace_Reuse
Function: p7_trace_Reuse() * Synopsis: Prepare a trace for reuse. * Incept: SRE, Tue Jan 9 13:02:34 2007 [Janelia] * * Purpose: Reinitiali
ext/src/hmmer/src/p7_trace.c:130
↓ 45 callersMethodprior
ext/include/boost/multi_index/detail/seq_index_node.hpp:162
↓ 45 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/TSVecTSMatMultExpr.h:208
↓ 45 callersMethodsize
Compile time band arguments
ext/include/blaze/blaze/math/views/band/Sparse.h:1373
↓ 45 callersFunctionswap
src/common/adt/flat_map.hpp:341
↓ 44 callersFunctionAssertionSuccess
Makes a successful assertion result.
ext/src/googletest/googletest/src/gtest-assertion-result.cc:66
↓ 44 callersFunctionappend
ext/src/llvm/Path.cpp:417
↓ 44 callersMethodbegin
ext/src/googletest/googlemock/test/gmock-matchers-containers_test.cc:1362
↓ 44 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatDeclStrUppExpr.h:279
↓ 44 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatDeclStrLowExpr.h:279
↓ 44 callersFunctionesl_arr2_Destroy
Function: esl_arr2_Destroy() * Synopsis: Free a 2D array. * Incept: SRE, Fri Nov 3 15:32:21 2017 * * Purpose: Free a 2D pointer array <p>,
ext/src/easel/esl_arr2.c:45
↓ 44 callersFunctionesl_mem_strtof
Function: esl_mem_strtof() * Synopsis: Convert a chunk of memory to a float. * Incept: SRE, Fri Jun 3 10:52:07 2016 [Hamilton] * * Purpose:
ext/src/easel/esl_mem.c:349
↓ 44 callersFunctionesl_msafile_stockholm_Read
Function: esl_msafile_stockholm_Read() * Synopsis: Read an alignment in Stockholm format. * * Purpose: Read an MSA from open <ESL_MSAFILE> <afp
ext/src/easel/esl_msafile_stockholm.c:244
↓ 44 callersFunctionformat
ext/include/cppformat/format.h:2051
↓ 44 callersMethodindex
Index function !\brief Access to the current index of the sparse element. // // \return The current index of the sparse element. */
ext/include/blaze/blaze/math/views/submatrix/Sparse.h:2676
↓ 44 callersFunctionp7_oprofile_Create
Function: p7_oprofile_Create() * Synopsis: Allocate an optimized profile structure. * Incept: SRE, Sun Nov 25 12:03:19 2007 [Casa de Gatos] *
ext/src/hmmer/src/impl_vmx/p7_oprofile.c:50
↓ 44 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatDeclLowExpr.h:269
↓ 44 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatDeclStrUppExpr.h:269
↓ 44 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatDeclSymExpr.h:269
↓ 44 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatDeclUniUppExpr.h:271
↓ 44 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatDeclStrLowExpr.h:269
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