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Functions40,422 in github.com/ablab/spades

⨍ Functions 40,422◇ Types & classes 24,500↳ Endpoints 21
↓ 57 callersFunction_mm_set1_ps
Sets the four single-precision, floating-point values to w. r0 := r1 := r2 := r3 := w https://msdn.microsoft.com/en-us/library/vstudio/2x1se8ha(v=vs
ext/include/sse2neon/sse2neon.h:2488
↓ 57 callersMethodbegin
ext/src/googletest/googletest/test/googletest-printers-test.cc:250
↓ 57 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatTSMatAddExpr.h:239
↓ 57 callersMethoddata
Return a pointer to the vector's buffer, even if empty().
ext/include/llvm/ADT/SmallVector.h:171
↓ 57 callersMethodeof
src/projects/mts/annotation.hpp:30
↓ 57 callersFunctionisIntact
Type tag
ext/include/blaze/blaze/math/dense/StaticVector.h:3010
↓ 57 callersMethodreserve
Reserve function !\brief Setting the minimum capacity of the sparse vector. // // \param nonzeros The new minimum capacity of the sparse vector.
ext/include/blaze/blaze/math/expressions/SVecTransposer.h:282
↓ 57 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/TSMatTSMatKronExpr.h:194
↓ 56 callersFunctionStreamableToString
ext/src/googletest/googletest/include/gtest/gtest-message.h:242
↓ 56 callersMethodarray_hash
ext/include/tsl/array-hash/array_hash.h:938
↓ 56 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatTSMatKronExpr.h:206
↓ 56 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/DVecDVecOuterExpr.h:585
↓ 56 callersMethodcolumns
Result type
ext/include/blaze/blaze/math/dense/CustomMatrix.h:1774
↓ 56 callersMethodcurrent
ext/src/lexy/include/lexy/dsl/scan.hpp:189
↓ 56 callersFunctionkputc
ext/src/bwa/kstring.h:50
↓ 56 callersFunctionp7_omx_Destroy
Function: p7_omx_Destroy() * Synopsis: Frees an optimized DP matrix. * Incept: SRE, Tue Nov 27 09:11:42 2007 [Janelia] * * Purpose: Frees o
ext/src/hmmer/src/impl_vmx/p7_omx.c:313
↓ 56 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/DVecDVecOuterExpr.h:575
↓ 56 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatTSMatAddExpr.h:229
↓ 56 callersMethodrows
Result type
ext/include/blaze/blaze/math/dense/CustomMatrix.h:1756
↓ 56 callersFunctionsize
size - Get the array size.
ext/include/llvm/ADT/ArrayRef.h:156
↓ 56 callersMethodsize
Result type
ext/include/blaze/blaze/math/dense/CustomVector.h:1654
↓ 55 callersFunctionAllOf
ext/src/googletest/googlemock/test/gmock-matchers-arithmetic_test.cc:1662
↓ 55 callersMethodLength
(self)
src/tools/contig_analysis/visualizer/misassemblies.py:161
↓ 55 callersFunctionPrintPointer
Since ::std::stringstream::operator<<(const void *) formats the pointer output differently with different compilers, we have to create the expected ou
ext/src/googletest/googletest/test/googletest-printers-test.cc:521
↓ 55 callersFunctioncolumn
Optional column arguments
ext/include/blaze/blaze/math/expressions/DMatGenExpr.h:1053
↓ 55 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatTSMatSubExpr.h:239
↓ 55 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatSMatKronExpr.h:204
↓ 55 callersMethodcontains
src/common/sequence/range.hpp:51
↓ 55 callersMethoddata
src/common/adt/array_vector.hpp:73
↓ 55 callersMethodend
src/common/assembly_graph/paths/mapping_path.hpp:48
↓ 55 callersMethodfind
find - Search for the first string \arg Str in the string. \return - The index of the first occurrence of \arg Str, or npos if not found.
ext/src/llvm/StringRef.cpp:133
↓ 55 callersMethodheight
The height of the btree. An empty tree will have height 0.
ext/include/parallel_hashmap/btree.h:1882
↓ 55 callersFunctionksprintf
ext/src/bwa/kstring.c:9
↓ 55 callersMethodrepeatable
--------------------------------------------------------------- @brief returns if a group/parameter is repeatable */
ext/include/clipp/clipp.h:1511
↓ 55 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/TSMatSMatSubExpr.h:229
↓ 54 callersFunctionPair
ext/src/googletest/googlemock/include/gmock/gmock-matchers.h:5264
↓ 54 callersMethodbegin
src/common/assembly_graph/core/graph_core.hpp:355
↓ 54 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/TSMatTSMatSubExpr.h:238
↓ 54 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/TSMatSMatSubExpr.h:239
↓ 54 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/TSMatTSMatAddExpr.h:238
↓ 54 callersMethodcolumns
Type tag
ext/include/blaze/blaze/math/dense/DynamicMatrix.h:1800
↓ 54 callersMethodemplace
src/projects/binspreader/id_map.hpp:115
↓ 54 callersFunctionexists
ext/src/llvm/Path.cpp:1024
↓ 54 callersFunctionks_getuntil
ext/src/samtools/kseq.h:140
↓ 54 callersMethodoffset
src/common/assembly_graph/index/edge_position_index.hpp:52
↓ 54 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatTSMatSubExpr.h:229
↓ 54 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatSMatSubExpr.h:228
↓ 54 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatSMatAddExpr.h:228
↓ 54 callersMethodrows
Type tag
ext/include/blaze/blaze/math/dense/DynamicMatrix.h:1784
↓ 54 callersMethodstore
Compile time row arguments
ext/include/blaze/blaze/math/views/row/Dense.h:1589
↓ 54 callersFunctiontie
ext/include/boost/tuple/detail/tuple_basic.hpp:874
↓ 53 callersFunctionInvoke
ext/src/googletest/googlemock/include/gmock/gmock-actions.h:2038
↓ 53 callersMethodOutgoingEdges
src/common/modules/simplification/mf_ec_remover.hpp:106
↓ 53 callersMethodchild
Getters/setter for the child at position i in the node.
ext/include/parallel_hashmap/btree.h:1211
↓ 53 callersMethodconcat
ext/include/llvm/ADT/Twine.h:488
↓ 53 callersFunctionconjugate
ext/include/blaze/blaze/math/shims/Conjugate.h:118
↓ 53 callersMethoderase
src/common/adt/pack.hpp:109
↓ 53 callersMethodget
src/common/hmm/hmmfile.hpp:27
↓ 53 callersFunctionisinf
ext/include/boost/core/cmath.hpp:48
↓ 53 callersFunctionmpi_failure
mpi_failure() * Generate an error message. If the clients rank is not 0, a * message is created with the error message and sent to the * master pr
ext/src/hmmer/src/hmmscan.c:573
↓ 53 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/SVecSVecAddExpr.h:203
↓ 53 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/SVecSVecSubExpr.h:203
↓ 52 callersMethodAdd
src/projects/spades/hybrid_gap_closer.hpp:421
↓ 52 callersFunctionbcf_str2int
ext/src/samtools/bcftools/bcf.h:186
↓ 52 callersFunctionbcf_str2int
ext/include/samtools/bcftools/bcf.h:186
↓ 52 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatSMatSubExpr.h:238
↓ 52 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/SMatSMatAddExpr.h:238
↓ 52 callersMethodcolumns
Columns function !\brief Returns the current number of columns of the matrix. // // \return The number of columns of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatDMatKronExpr.h:212
↓ 52 callersFunctionesl_sqfile_Open
Function: esl_sqfile_Open() * Synopsis: Open a sequence file <filename> for reading. * * Purpose: Open a sequence file <filename> for reading.
ext/src/easel/esl_sqio.c:84
↓ 52 callersFunctionesl_strcmp
Function: esl_strcmp() * Synopsis: a strcmp() that treats NULL as empty string. * * Purpose: A version of <strcmp()> that accepts <NULL> *
ext/src/easel/easel.c:1407
↓ 52 callersFunctionisSymmetric
Compile time submatrix arguments
ext/include/blaze/blaze/math/views/Submatrix.h:2893
↓ 52 callersMethodload
Result type
ext/include/blaze/blaze/math/dense/CustomVector.h:2042
↓ 52 callersMethodmax
* @brief Finds the point with the maximal distance. */
src/common/paired_info/paired_info.hpp:150
↓ 52 callersFunctionp7_FLogsumInit
Function: p7_FLogsumInit() * Synopsis: Initialize the p7_Logsum() function. * * Purpose: Initialize the lookup table for <p7_FLogsum()>. *
ext/src/hmmer/src/logsum.c:79
↓ 52 callersFunctionp7_GViterbi
Function: p7_GViterbi() * Synopsis: The Viterbi algorithm. * Incept: SRE, Tue Jan 30 10:50:53 2007 [Einstein's, St. Louis] * * Purpose: Th
ext/src/hmmer/src/generic_viterbi.c:63
↓ 52 callersFunctionreal
ext/include/blaze/blaze/math/proxy/Proxy.h:1252
↓ 52 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/TSMatTSMatSubExpr.h:228
↓ 52 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/DMatDMatKronExpr.h:202
↓ 52 callersMethodrows
Rows function !\brief Returns the current number of rows of the matrix. // // \return The number of rows of the matrix. */
ext/include/blaze/blaze/math/expressions/TSMatTSMatAddExpr.h:228
↓ 52 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/DVecSVecMultExpr.h:368
↓ 52 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/SVecDVecDivExpr.h:363
↓ 52 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/SVecDVecMultExpr.h:363
↓ 51 callersMethodcolumns
Type tag
ext/include/blaze/blaze/math/dense/HybridMatrix.h:1933
↓ 51 callersMethodempty
src/common/modules/path_extend/scaff_supplementary.hpp:63
↓ 51 callersMethodempty
src/common/adt/pack.hpp:99
↓ 51 callersMethodend
src/projects/pathracer/pathtree.hpp:627
↓ 51 callersFunctionesl_strtok
Function: esl_strtok() * Synopsis: Threadsafe version of C's <strtok()> * * Purpose: Thread-safe version of <strtok()> for parsing next token in
ext/src/easel/easel.c:1239
↓ 51 callersMethodis
ext/include/llvm/ADT/PointerUnion.h:199
↓ 51 callersFunctionls
src/common/math/xmath.h:302
↓ 51 callersFunctionmpi_failure
mpi_failure() * Generate an error message. If the clients rank is not 0, a * message is created with the error message and sent to the * master pr
ext/src/hmmer/src/jackhmmer.c:831
↓ 51 callersFunctionrand
Type of the random number
ext/include/blaze/blaze/util/Random.h:583
↓ 51 callersMethodrows
Type tag
ext/include/blaze/blaze/math/dense/HybridMatrix.h:1914
↓ 51 callersMethodsize
ext/include/llvm/ADT/SmallVector.h:66
↓ 51 callersMethodsize
Size function !\brief Returns the current size/dimension of the vector. // // \return The size of the vector. */
ext/include/blaze/blaze/math/expressions/TDVecSMatMultExpr.h:236
↓ 50 callersMethodDescribeTo
ext/src/googletest/googlemock/include/gmock/gmock-matchers.h:1585
↓ 50 callersMethodbegin
--------------------------------------------------------------- @brief returns mutating iterator to position of first element */
ext/include/clipp/clipp.h:3425
↓ 50 callersMethodend
src/common/modules/simplification/mf_ec_remover.hpp:148
↓ 50 callersMethodend
@brief returns mutating iterator to position one past the last element */
ext/include/clipp/clipp.h:3432
↓ 50 callersFunctionesl_rnd_FChoose
ext/src/easel/esl_random.c:849
↓ 50 callersFunctionesl_usage
Function: esl_usage() * Synopsis: print standard Easel application usage help line * * Purpose: Given a usage string <usage> and the name of th
ext/src/easel/easel.c:633
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