Functions — github.com/SysBioChalmers/HGTphyloDetect

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Functions15 in github.com/SysBioChalmers/HGTphyloDetect

⨍ Functions 15 ◇ Types & classes 0

↓ 3 callersFunctiongetTaxid

example/HGT_workflow.py:39

↓ 3 callersFunctiongetTaxid

main/HGT_workflow_close.py:32

↓ 3 callersFunctiongetTaxid

main/HGT_workflow_distant.py:39

↓ 2 callersFunctionparse_NCBI

main/HGT_workflow_close.py:15

↓ 2 callersFunctionparse_NCBI

main/HGT_workflow_distant.py:22

↓ 1 callersFunctiongetSeq

phylogenetics/scripts/HGT_homologs_sequence.py:64

↓ 1 callersFunctiongetTaxid

phylogenetics/scripts/HGT_homologs_sequence.py:43

↓ 1 callersFunctionget_refSeq

phylogenetics/scripts/HGT_homologs_sequence.py:29

↓ 1 callersFunctionmain

(AI=45, out_pct=0.90)

example/HGT_workflow.py:60

↓ 1 callersFunctionmain

phylogenetics/scripts/HGT_homologs_sequence.py:81

↓ 1 callersFunctionmain

main/blastp.py:12

↓ 1 callersFunctionmain

(bitscore_parameter=100, HGTIndex=0.5, out_pct=0.8)

main/HGT_workflow_close.py:53

↓ 1 callersFunctionmain

(AI=45, out_pct=0.90)

main/HGT_workflow_distant.py:60

↓ 1 callersFunctionparse_NCBI

example/HGT_workflow.py:22

↓ 1 callersFunctionparse_NCBI

phylogenetics/scripts/HGT_homologs_sequence.py:15