Functions — github.com/PacificBiosciences/trgt

CodeHub MCPcopy Create free account

hub / github.com/PacificBiosciences/trgt / functions

Functions837 in github.com/PacificBiosciences/trgt

⨍ Functions 837◇ Types & classes 113

Functiontest_span_calculation_edge_cases

src/trgt/locus_group.rs:337

Functiontest_streaming_merge_errors_on_decreasing_positions

src/merge/vcf_processor.rs:1695

Functiontest_streaming_merges_all_records_at_same_position

src/merge/vcf_processor.rs:1645

Functiontest_suppresses_trailing_insertion_without_majority

src/trgt/genotype/consensus.rs:202

Functiontest_trailing_insertion_is_emitted

src/trgt/genotype/consensus.rs:186

Functiontest_trgt_vcf_helpers_write_default_records

src/utils/test_util.rs:555

Functiontest_try_read_field_id_info_and_format

src/merge/field_registry.rs:960

Functiontest_try_read_field_id_missing

src/merge/field_registry.rs:853

Functiontest_uses_alias_when_primary_missing

src/merge/field_registry.rs:906

Functiontest_vcf_builder_basic

src/utils/test_util.rs:499

Functiontest_vcf_builder_multiple_records

src/utils/test_util.rs:654

Functiontest_vcf_builder_trgt_preset

src/utils/test_util.rs:784

Functiontest_vcf_builder_with_filter

src/utils/test_util.rs:741

Functiontest_vcf_builder_with_format_fields

src/utils/test_util.rs:618

Functiontest_vcf_builder_with_id

src/utils/test_util.rs:720

Functiontest_vcf_builder_with_info

src/utils/test_util.rs:580

Functiontest_vcf_builder_with_info_flag

src/utils/test_util.rs:762

Functiontest_vcf_builder_with_qual

src/utils/test_util.rs:598

Functiontest_vcf_record_wrapper_heap

src/merge/vcf_processor.rs:1519

Functiontest_write_vcf_with_gt_backwards_compat

src/utils/test_util.rs:710

Functionthreads_in_range

Functiontr_with_outliers

src/trgt/genotype/haploid.rs:55

Functionunreadable_or_unindexed_supplemental_source_reports_source

src/utils/bam_utils.rs:206

Methodvalidate_field_consistency

( field_id: &[u8], descriptors: &[FieldDescriptor<'static>], category: FieldCategory,

src/merge/vcf_processor.rs:310

Functionvalidate_output_type

Methodvalidate_ref_allele

(allele_lists: &[Vec<&'a [u8]>])

src/merge/genotype_types.rs:67

Functionvalidation_returns_primary_header_as_canonical_header

src/utils/bam_utils.rs:262

src/merge/field_registry.rs:82

Methodwith_tpool

(sources: Vec<BamSourceReader>, tpool: ThreadPool)

src/trgt/genotype_reader.rs:103

Methodwith_trgt_info

(trid: S, end: i32, motifs: S, struc: S)

src/utils/test_util.rs:253

Writes the spanning reads to the BAM file from the genotyping results for a specific locus. # Arguments `locus` - `Locus` struct containing locus in

src/trgt/writers/write_bam.rs:95

Methodwrite_field

( writer: &mut VcfWriter, field_id: &[u8], field_value: &FieldValue, )

src/merge/field_registry.rs:524

Methodwrite_format_fields

(&self, writer: &mut VcfWriter)

src/merge/field_registry.rs:450

Methodwrite_index

src/merge/vcf_processor.rs:1215

Functionwrite_index_builds_csi_for_compressed_bcf

src/merge/vcf_writer.rs:198

Functionwrite_index_builds_tabix_for_compressed_vcf

src/merge/vcf_writer.rs:172

Functionwriter_options_return_expected_htslib_format

src/utils/io_utils.rs:185

← previous801–837 of 837, ranked by callers