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Types & classes113 in github.com/PacificBiosciences/trgt

⨍ Functions 837◇ Types & classes 113

↓ 5 callersEnumRemote

src/utils/input_source.rs:29

src/trvz/align.rs:19

src/trvz/align.rs:12

EnumAlignmentScope

src/wfaligner.rs:53

EnumAlignmentStatus

src/wfaligner.rs:126

src/utils/locus.rs:17

src/trgt/workflows/locus_result.rs:7

ClassAlleleAlign

src/trvz/align.rs:4

EnumAlleleAssign

src/trgt/reads/read.rs:10

ClassAlleleRegistry

src/merge/genotype_types.rs:27

ClassAnnotation

src/hmm/spans.rs:21

src/trgt/workflows/tr.rs:224

ClassBamOpenOptions

src/utils/readers/bam.rs:12

InterfaceBamRead

src/trgt/genotype_reader.rs:8

src/trgt/genotype_reader.rs:13

ClassBamSourceReader

src/trgt/genotype_reader.rs:56

ClassBamSources

src/utils/input_source.rs:77

Structure for writing spanning reads from genotyping results.

src/trgt/writers/write_bam.rs:16

crates/pipeplot/src/pipeplot.rs:21

src/utils/read.rs:16

ClassBufferedSourceReader

src/trgt/genotype_reader.rs:173

src/trgt/reads/cigar.rs:33

InterfaceCigarOpExt

src/trgt/reads/cigar.rs:3

ClassCollectedVariantData

src/merge/vcf_processor.rs:28

src/trvz/params.rs:70

ClassDeepdiveArgs

EnumDistanceMetric

src/wfaligner.rs:79

EnumFieldCategory

src/merge/field_registry.rs:17

ClassFieldDataRegistry

src/merge/field_registry.rs:358

ClassFieldDescriptor

src/merge/field_registry.rs:140

ClassFieldIdCache

src/merge/field_registry.rs:42

EnumFieldNumber

src/merge/field_registry.rs:32

src/merge/field_registry.rs:71

crates/pipeplot/src/image.rs:19

ClassFontConfig

crates/pipeplot/src/pipeplot.rs:46

EnumFormatValue

src/utils/test_util.rs:45

crates/pipeplot/src/svg.rs:29

ClassGenomicRegion

src/utils/region.rs:5

ClassGenotypeArgs

src/utils/genotyper.rs:4

src/wfaligner.rs:69

src/trgt/reads/read.rs:43

src/hmm/hmm_model.rs:13

src/hmm/events.rs:6

src/hmm/hmm_model.rs:22

ClassHtsThreadPool

Thread pool for parallel BGZF decompression across multiple VCF readers. This allows sharing decompression threads among multiple BCF IndexedReader's,

src/merge/tpool.rs:19

ClassIndexedReaderLayout

src/merge/tpool.rs:45

EnumInfoFieldValue

src/merge/vcf_processor.rs:1221

src/utils/test_util.rs:39

ClassInputLocus

src/utils/locus.rs:25

ClassInputLocusBuilder

src/utils/locus.rs:88

EnumInputSource

src/utils/input_source.rs:71

src/utils/karyotype.rs:5

crates/pipeplot/src/pipeplot.rs:38

src/trgt/locus.rs:11

ClassLocusGroup

src/trgt/locus_group.rs:16

ClassLocusResult

src/trgt/workflows/locus_result.rs:31

EnumMemoryModel

src/wfaligner.rs:5

ClassMergeProgress

src/merge/vcf_processor.rs:94

ClassMultiBamReader

src/trgt/genotype_reader.rs:92

src/utils/io_utils.rs:15

src/trgt/workflows/tr.rs:17

src/wfaligner.rs:88

ClassPhaseResult

src/trgt/workflows/tr.rs:448

crates/pipeplot/src/pipeplot.rs:28

crates/pipeplot/src/pipeplot.rs:63

src/utils/ploidy.rs:4

src/utils/karyotype.rs:10

ClassPlotParams

src/trvz/params.rs:6

InterfacePreflightExt

src/utils/input_source.rs:332

src/utils/read.rs:4

EnumReaderBackend

src/merge/vcf_reader.rs:44

ClassReaderLayout

src/merge/tpool.rs:95

EnumReferencePolicy

src/utils/readers/bam.rs:6

EnumRegionLabel

src/utils/locus.rs:9

crates/pipeplot/src/pipeplot.rs:14

src/trvz/align.rs:27

crates/pipeplot/src/pipeplot.rs:2

ClassSingleBamReader

src/trgt/genotype_reader.rs:70

src/utils/input.rs:15

src/hmm/spans.rs:2

ClassSpanningRead

src/trgt/reads/read.rs:20

src/commands/validate.rs:132

ClassStreamRecordWithSource

src/merge/vcf_processor.rs:64

src/wfaligner.rs:1389

src/utils/test_util.rs:51

src/trgt/genotype/genotype_flank.rs:326

ClassTestVcfBuilder

src/utils/test_util.rs:19

ClassTestVcfRecord

src/utils/test_util.rs:27

ClassThreadContextParams

src/commands/genotype.rs:24

src/trgt/genotype/gt.rs:4

src/utils/presets.rs:4

ClassTrgtScoring

src/utils/align.rs:8

ClassValidateArgs

ClassVcfProcessor

src/merge/vcf_processor.rs:100

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