Functions — github.com/PacificBiosciences/trgt

hub / github.com/PacificBiosciences/trgt / functions

Functions837 in github.com/PacificBiosciences/trgt

⨍ Functions 837◇ Types & classes 113

Functiontest_format_number_with_commas_i64

()

src/utils/util.rs:90

Functiontest_format_number_with_commas_i8

()

src/utils/util.rs:42

Functiontest_format_number_with_commas_isize

()

src/utils/util.rs:128

Functiontest_format_number_with_commas_u16

()

src/utils/util.rs:67

Functiontest_format_number_with_commas_u32

()

src/utils/util.rs:83

Functiontest_format_number_with_commas_u64

()

src/utils/util.rs:105

Functiontest_format_number_with_commas_u8

()

src/utils/util.rs:51

Functiontest_format_number_with_commas_usize

()

src/utils/util.rs:115

Functiontest_genotype_allele_remap

()

src/merge/genotype_types.rs:110

Functiontest_get_alignment_ends_free

()

src/wfaligner.rs:1795

Functiontest_get_alignment_global

()

src/wfaligner.rs:1719

Functiontest_get_alleles_errors_on_phased_missing_gt

()

src/utils/input.rs:316

Functiontest_get_alleles_errors_on_trid_not_found

()

src/utils/input.rs:341

Functiontest_get_alleles_errors_on_unphased_missing_gt

()

src/utils/input.rs:327

Functiontest_get_alleles_handles_genotypes

()

src/utils/input.rs:285

Functiontest_get_and_decode_sam_cigar

()

src/wfaligner.rs:1590

Functiontest_get_dist_matrix_correctness

()

src/trgt/genotype/genotype_cluster.rs:326

Functiontest_get_heuristics

()

src/wfaligner.rs:1679

Functiontest_get_penalties

()

src/wfaligner.rs:1457

Functiontest_get_profiles_basic

()

src/trgt/genotype/genotype_flank.rs:660

Functiontest_get_profiles_no_coverage

()

src/trgt/genotype/genotype_flank.rs:705

Functiontest_get_profiles_no_mismatches

()

src/trgt/genotype/genotype_flank.rs:757

Functiontest_get_profiles_partial_coverage

()

src/trgt/genotype/genotype_flank.rs:731

Functiontest_get_query_len

()

src/trgt/reads/cigar.rs:72

Functiontest_get_ref_len

()

src/trgt/reads/cigar.rs:64

Functiontest_group_records_by_trid_handles_multiple_trids

()

src/merge/vcf_processor.rs:1935

Functiontest_gt_has_special_handling

()

src/merge/field_descriptors.rs:278

Functiontest_hom_remains_unphased

()

src/trgt/writers/write_vcf.rs:471

Functiontest_hp_tag_non_1_or_2_invalid

()

src/trgt/reads/read.rs:265

Functiontest_hp_tag_one_and_two_valid

()

src/trgt/reads/read.rs:255

Functiontest_indexed_bam_builder_writes_fetchable_records

()

src/utils/test_util.rs:515

Functiontest_indexed_test_bam_builder_writes_sample_metadata

()

src/utils/test_util.rs:534

Functiontest_info_fields_defined

()

src/merge/field_descriptors.rs:173

Functiontest_insertion_between_bases_is_emitted

()

src/trgt/genotype/consensus.rs:211

Functiontest_insertion_majority_threshold

()

src/trgt/genotype/consensus.rs:245

Functiontest_intermittent_mismatches

()

src/trgt/reads/snp.rs:548

Functiontest_invalid_sequence

()

src/wfaligner.rs:1438

Functiontest_is_empty_reflects_loci_storage

()

src/trgt/locus_group.rs:361

Functiontest_karyotype_custom

()

src/utils/karyotype.rs:132

Functiontest_karyotype_from_reader

()

src/utils/karyotype.rs:143

Functiontest_karyotype_from_reader_duplicate_chromosome

()

src/utils/karyotype.rs:183

Functiontest_karyotype_from_reader_empty_file

()

src/utils/karyotype.rs:193

Functiontest_karyotype_from_reader_incomplete_line

()

src/utils/karyotype.rs:158

Functiontest_karyotype_from_reader_invalid_ploidy

()

src/utils/karyotype.rs:169

Functiontest_karyotype_new_rejects_unknown_preset

()

src/utils/karyotype.rs:204

Functiontest_karyotype_new_reports_missing_path_like_file

()

src/utils/karyotype.rs:213

Functiontest_load_group_into_sample_records_detects_duplicates

()

src/merge/vcf_processor.rs:1965

Functiontest_locus_search_window_saturates_at_coordinate_bounds

()

src/trgt/locus_group.rs:371

Functiontest_majority_deletion_wins

()

src/trgt/genotype/consensus.rs:221

Functiontest_matching_modifications

()

src/trgt/reads/read.rs:272

Functiontest_median_all_same

()

src/utils/math.rs:205

Functiontest_median_empty

()

src/utils/math.rs:121

Functiontest_median_even_count_reverse_sorted

()

src/utils/math.rs:170

Functiontest_median_even_count_sorted

()

src/utils/math.rs:156

Functiontest_median_even_count_unsorted

()

src/utils/math.rs:142

Functiontest_median_large_even

()

src/utils/math.rs:212

Functiontest_median_large_odd

()

src/utils/math.rs:219

Functiontest_median_large_random

()

src/utils/math.rs:240

Functiontest_median_large_reverse_sorted_even

()

src/utils/math.rs:226

Functiontest_median_large_reverse_sorted_odd

()

src/utils/math.rs:233

Functiontest_median_odd_count_reverse_sorted

()

src/utils/math.rs:163

Functiontest_median_odd_count_sorted

()

src/utils/math.rs:149

Functiontest_median_odd_count_unsorted

()

src/utils/math.rs:135

Functiontest_median_single_element

()

src/utils/math.rs:128

Functiontest_median_with_duplicates_even

()

src/utils/math.rs:177

Functiontest_median_with_duplicates_odd

()

src/utils/math.rs:184

Functiontest_median_with_negatives_even

()

src/utils/math.rs:191

Functiontest_median_with_negatives_odd

()

src/utils/math.rs:198

Functiontest_memory_modes

()

src/wfaligner.rs:1384

Functiontest_merge_and_write_restores_info_fields_after_error

()

src/merge/vcf_processor.rs:1745

Functiontest_merge_exact

()

src/merge/strategy/exact.rs:43

Functiontest_merge_exact_phasing

()

src/merge/strategy/exact.rs:118

Functiontest_merge_matches_indexed_for_simple_inputs

()

src/merge/vcf_processor.rs:1575

Functiontest_merge_phase_ordering

()

src/merge/strategy/exact.rs:161

Functiontest_methylation_clipping

()

src/trgt/reads/clip_bases.rs:224

Functiontest_mismatch_count_full_cigar

()

src/trgt/reads/snp.rs:469

Functiontest_mismatch_count_offset_full_cigar

()

src/trgt/reads/snp.rs:491

Functiontest_mismatches_in_consensus

()

src/trgt/genotype/consensus.rs:233

Functiontest_missing_required_fields_error

()

src/merge/vcf_processor.rs:1727

Functiontest_multiple_loci_ordering

()

src/trgt/locus_group.rs:318

Functiontest_new_group

()

src/trgt/locus_group.rs:234

Functiontest_no_mismatch

()

src/trgt/reads/snp.rs:513

Functiontest_optional_fields

()

src/merge/field_descriptors.rs:291

Functiontest_phased_het_writes_phased_gt_and_ps

()

src/trgt/writers/write_vcf.rs:442

Functiontest_query_len

()

src/trgt/reads/cigar.rs:50

Functiontest_redact_url_basic_auth

()

src/utils/input_source.rs:387

Functiontest_redact_url_combined

()

src/utils/input_source.rs:493

Functiontest_redact_url_fragment

()

src/utils/input_source.rs:409

Functiontest_redact_url_no_credentials

()

src/utils/input_source.rs:419

Functiontest_redact_url_only_username

()

src/utils/input_source.rs:426

Functiontest_redact_url_query_string

()

src/utils/input_source.rs:398

Functiontest_required_fields

()

src/merge/field_descriptors.rs:239

Functiontest_reverse_matching_modifications

()

src/trgt/reads/read.rs:282

Functiontest_select_inplace_basic

()

src/utils/math.rs:253

Functiontest_select_inplace_duplicates

()

src/utils/math.rs:262

Functiontest_select_inplace_out_of_bounds

()

src/utils/math.rs:285

Functiontest_select_inplace_reverse_sorted

()

src/utils/math.rs:278

Functiontest_select_inplace_sorted

()

src/utils/math.rs:271

Functiontest_set_heuristic

()

src/wfaligner.rs:1424

Functiontest_set_info_field_prefers_first_non_missing_value

()

src/merge/vcf_processor.rs:1792

← previous next →701–800 of 837, ranked by callers