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github.com/GUDHI/gudhi-devel
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Functions
4,084 in github.com/GUDHI/gudhi-devel
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Functions
4,084
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Types & classes
709
↓ 1 callers
Method
_death_val
src/Persistence_matrix/include/gudhi/Persistence_matrix/ru_vine_swap.h:135
↓ 1 callers
Function
_delaunay_complex
(precision)
src/python/test/test_delaunay_complex.py:145
↓ 1 callers
Function
_duplicated_2d_points_on_a_plane
(simplicial_complex, precision)
src/python/test/test_delaunay_complex.py:193
↓ 1 callers
Function
_empty_complex
(simplicial_complex, precision)
src/python/test/test_delaunay_complex.py:29
↓ 1 callers
Function
_empty_input_diagram
(function)
src/python/test/test_persistence_graphical_tools.py:235
↓ 1 callers
Function
_finite_threshold
(simplicial_complex, precision)
src/python/test/test_delaunay_complex.py:83
↓ 1 callers
Function
_generate_grid_points_on_torus
(n_samples: int, dim: int)
src/python/gudhi/datasets/generators/points.py:31
↓ 1 callers
Function
_generate_random_points_on_torus
(n_samples: int, dim: int)
src/python/gudhi/datasets/generators/points.py:19
↓ 1 callers
Function
_get_number_of_pairs_by_dimension
(barcode)
src/python/gudhi/persistence_graphical_tools.py:98
↓ 1 callers
Function
_infinite_threshold
(simplicial_complex, precision)
src/python/test/test_delaunay_complex.py:44
↓ 1 callers
Method
_is_lazy_erased
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/vector_column.h:1176
↓ 1 callers
Method
_is_negative_in_bar
src/Persistence_matrix/include/gudhi/Persistence_matrix/chain_vine_swap.h:133
↓ 1 callers
Function
_limit_plot_persistence
(function)
src/python/test/test_persistence_graphical_tools.py:161
↓ 1 callers
Function
_load_and_cache_activity
(file_path)
src/python/gudhi/datasets/remote.py:271
↓ 1 callers
Method
_negative_positive_transpose_barcode
src/Persistence_matrix/include/gudhi/Persistence_matrix/chain_vine_swap.h:169
↓ 1 callers
Method
_negative_positive_transpose_barcode
src/Persistence_matrix/include/gudhi/Persistence_matrix/ru_vine_swap.h:128
↓ 1 callers
Method
_negative_transpose_barcode
src/Persistence_matrix/include/gudhi/Persistence_matrix/ru_vine_swap.h:114
↓ 1 callers
Function
_non_existing_persistence_file
(function)
src/python/test/test_persistence_graphical_tools.py:181
↓ 1 callers
Function
_one_2d_point_complex
(simplicial_complex, precision)
src/python/test/test_delaunay_complex.py:33
↓ 1 callers
Function
_persistence_scale_space_kernel
This is a function for computing the persistence scale space kernel value from two persistence diagrams. The persistence scale space kernel is co
src/python/gudhi/representations/kernel_methods.py:64
↓ 1 callers
Method
_positive_negative_transpose_barcode
src/Persistence_matrix/include/gudhi/Persistence_matrix/ru_vine_swap.h:121
↓ 1 callers
Method
_positive_transpose_barcode
src/Persistence_matrix/include/gudhi/Persistence_matrix/ru_vine_swap.h:107
↓ 1 callers
Function
_read_off_file_header
Return the information contained in the header of an OFF file. :param file_desc: An open file in read mode. :type file_desc: file :retur
src/python/gudhi/off_utils.py:39
↓ 1 callers
Method
_remove_last
src/Persistence_matrix/include/gudhi/Persistence_matrix/base_pairing.h:220
↓ 1 callers
Function
_shuffled_diagram
(function)
src/python/test/test_persistence_graphical_tools.py:282
↓ 1 callers
Function
_sklearn_one_homology_dim_plot_persistence
(function)
src/python/test/test_persistence_graphical_tools.py:195
↓ 1 callers
Function
_sklearn_several_homology_dim_plot_persistence
(function)
src/python/test/test_persistence_graphical_tools.py:210
↓ 1 callers
Function
_trim_endpoints
(x, are_endpoints_nan)
src/python/gudhi/representations/vector_methods.py:180
↓ 1 callers
Function
_weighted_doc_example
(precision)
src/python/test/test_alpha_complex.py:98
↓ 1 callers
Method
abs
* Function to compute absolute value of a PL function. The representation of persistence landscapes allow to store * general PL-function. When comp
src/Persistence_representations/include/gudhi/Persistence_landscape_on_grid.h:726
↓ 1 callers
Method
abstract_link
* Constructs the abstract link of v (without points coordinates). */
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_geometric_complex.h:163
↓ 1 callers
Method
add_birth_backward
* @brief Inserts arrow number in the ordering after a removal. * When the arrow key-1 <- key is backward, key is smaller than any other index
src/Zigzag_persistence/include/gudhi/zigzag_persistence.h:210
↓ 1 callers
Method
add_birth_forward
* @brief Inserts arrow number in the ordering after an insertion. * When the arrow key-1 -> key is forward, key is larger than any other index
src/Zigzag_persistence/include/gudhi/zigzag_persistence.h:199
↓ 1 callers
Method
add_blocker
* Add a blocker to the sub-complex. * It assumes that all vertices of blocker_root are present * in the sub-complex. */
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/Skeleton_blocker_sub_complex.h:112
↓ 1 callers
Method
add_element
src/Tangential_complex/benchmark/XML_exporter.h:35
↓ 1 callers
Method
all_cells_range
Returns a range over all cells. */
src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_base.h:285
↓ 1 callers
Function
all_faces_in
src/Witness_complex/include/gudhi/Witness_complex/all_faces_in.h:20
↓ 1 callers
Method
all_near_neighbors2
src/Spatial_searching/include/gudhi/Kd_tree_search.h:354
↓ 1 callers
Method
amb_d
\brief Ambient dimension of the implicit manifold. */
src/Coxeter_triangulation/include/gudhi/Implicit_manifold_intersection_oracle.h:121
↓ 1 callers
Method
amb_d
\brief Returns the domain (ambient) dimension. */
src/Coxeter_triangulation/include/gudhi/Functions/PL_approximation.h:63
↓ 1 callers
Method
append_column
Close the current column, the next push_back will be for a new column
src/Ripser/include/gudhi/ripser.h:422
↓ 1 callers
Method
apply_identity
* @brief To use when a cell is neither inserted nor removed, but the filtration moves along the identity operator * on homology level. Useful to ke
src/Zigzag_persistence/include/gudhi/filtered_zigzag_persistence.h:551
↓ 1 callers
Function
assign_MEB_filtration
src/Cech_complex/include/gudhi/MEB_filtration.h:47
↓ 1 callers
Method
begin_draw_edges
src/GudhUI/view/Viewer.cpp:133
↓ 1 callers
Method
begin_draw_points
src/GudhUI/view/Viewer.cpp:103
↓ 1 callers
Method
begin_draw_triangles
src/GudhUI/view/Viewer.cpp:151
↓ 1 callers
Method
betti_numbers
This function returns the Betti numbers of the complex. :returns: list of int -- The Betti numbers ([B0, B1, ..., Bn]). :note: betti
src/python/gudhi/cubical_complex.py:296
↓ 1 callers
Method
birth_order
* @brief Increasing birth order <=b, true iff k1 <b k2. * * @param k1 * @param k2 * @return true if k1 <b k2, false otherwise.
src/Zigzag_persistence/include/gudhi/zigzag_persistence.h:230
↓ 1 callers
Function
bottleneck_distance_approx
src/Bottleneck_distance/include/gudhi/Bottleneck.h:36
↓ 1 callers
Function
bottleneck_distance_exact
src/Bottleneck_distance/include/gudhi/Bottleneck.h:70
↓ 1 callers
Method
boundary_simplex_range
src/Hasse_complex/include/gudhi/Hasse_complex.h:170
↓ 1 callers
Function
build_complete_complex
src/Skeleton_blocker/example/Skeleton_blocker_iteration.cpp:25
↓ 1 callers
Method
build_link
* @brief compute vertices, edges and blockers of the link. * @details If the boolean only_superior_vertices is true, then the link is computed only
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_link_complex.h:254
↓ 1 callers
Function
build_simplex_tree
src/Persistence_matrix/example/example_simplex_tree_to_matrix.cpp:37
↓ 1 callers
Function
calculRacines
(equation,nombrePoints,module_x)
data/points/generator/aurelien_alvarez_surfaces_in_R8.py:35
↓ 1 callers
Method
call
Compute Rips persistence diagram associated to a point cloud Parameters: X (TensorFlow variable): point cloud of shape [
src/python/gudhi/tensorflow/rips_layer.py:99
↓ 1 callers
Method
call
Compute lower-star persistence diagram associated to a function defined on the vertices of the simplex tree Parameters:
src/python/gudhi/tensorflow/lower_star_simplex_tree_layer.py:104
↓ 1 callers
Method
change_edge_mode
src/GudhUI/view/View_parameter.h:72
↓ 1 callers
Method
change_triangle_mode
src/GudhUI/view/View_parameter.h:81
↓ 1 callers
Method
change_vertex_mode
src/GudhUI/view/View_parameter.h:52
↓ 1 callers
Function
check_contains_sub_delaunay
src/Alpha_complex/test/Incremental_delaunay_test.cpp:34
↓ 1 callers
Method
clear
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/unordered_set_column.h:532
↓ 1 callers
Method
clear
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/Skeleton_blocker_sub_complex.h:156
↓ 1 callers
Method
clear
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/Skeleton_blocker_simplex.h:54
↓ 1 callers
Method
coboundary_range
* @brief Returns a Complex_simplex_coboundary_iterator over the simplices of the coboundary of a simplex. */
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_complex.h:1415
↓ 1 callers
Method
cod_d
\brief Returns the codomain dimension. */
src/Coxeter_triangulation/include/gudhi/Functions/PL_approximation.h:66
↓ 1 callers
Method
cofaces_of_persistence_pairs
A persistence interval is described by a pair of cells, one that creates the feature and one that kills it. The filtration values of those 2 c
src/python/gudhi/periodic_cubical_complex.py:186
↓ 1 callers
Method
cofacet_range
\brief Returns a range of permutahedral representations of cofacets of the simplex. * The dimension of the simplex must be strictly different from
src/Coxeter_triangulation/include/gudhi/Permutahedral_representation.h:129
↓ 1 callers
Function
collapse
src/python/gudhi/_edge_collapse.cc:26
↓ 1 callers
Method
collapse
src/Tangential_complex/include/gudhi/Tangential_complex/Simplicial_complex.h:108
↓ 1 callers
Method
commit_current_element
src/Tangential_complex/benchmark/benchmark_tc.cpp:152
↓ 1 callers
Method
compute_barcodes
src/Ripser/include/gudhi/ripser.h:1235
↓ 1 callers
Method
compute_diameter
src/Ripser/include/gudhi/ripser.h:687
↓ 1 callers
Method
compute_distribution
\brief Computes bootstrapped distances distribution. * * @param[in] N number of bootstrap iterations. * */
src/Nerve_GIC/include/gudhi/GIC.h:1222
↓ 1 callers
Method
compute_hash_value
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/vector_column.h:935
↓ 1 callers
Method
compute_hash_value
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/heap_column.h:841
↓ 1 callers
Method
compute_index_in_bitmap
src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_base.h:367
↓ 1 callers
Method
compute_maximum
* Computations of maximum (y) value of landscape. **/
src/Persistence_representations/include/gudhi/Persistence_landscape_on_grid.h:600
↓ 1 callers
Method
compute_minimum
* \private Computations of minimum (y) value of landscape. **/
src/Persistence_representations/include/gudhi/Persistence_landscape.h:421
↓ 1 callers
Method
compute_minimum_maximum
* Computations of minimum and maximum value of landscape. **/
src/Persistence_representations/include/gudhi/Persistence_landscape_on_grid.h:618
↓ 1 callers
Method
compute_p_value
\brief Computes the p-value, i.e. the opposite of the confidence level of the largest bottleneck * distance preserving the points in the persistenc
src/Nerve_GIC/include/gudhi/GIC.h:1300
↓ 1 callers
Method
compute_percentage_of_active
src/Persistence_representations/include/gudhi/Persistence_heat_maps.h:826
↓ 1 callers
Method
compute_persistent_cohomology_without_optimizations
* @private * Temporary patch to make the computation of more general FilteredComplex possible * Will be removed when a better solution was agree
src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h:221
↓ 1 callers
Function
compute_proximity_graph
src/Simplex_tree/example/cech_complex_cgal_mini_sphere_3d.cpp:176
↓ 1 callers
Function
compute_star
Output: "triangulation" is a Regular Triangulation containing at least the star of "center_pt" Returns the handle of the center vertex
src/Tangential_complex/include/gudhi/Tangential_complex.h:960
↓ 1 callers
Method
compute_value_at_a_given_point
* A function that computes the value of a landscape at a given point. The parameters of the function are: unsigned * level and double x. * The p
src/Persistence_representations/include/gudhi/Persistence_landscape_on_grid.h:364
↓ 1 callers
Method
contains
* @return true iff the simplex contains the simplex a. */
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/Skeleton_blocker_simplex.h:228
↓ 1 callers
Method
contract_edges
src/GudhUI/gui/MainWindow.cpp:215
↓ 1 callers
Method
contraction
src/Toplex_map/benchmark/benchmark_tm.cpp:40
↓ 1 callers
Function
create_complex
src/python/include/python_interfaces/delaunay_complex_interface.h:75
↓ 1 callers
Method
create_simplex_tree
Args: max_alpha_square (float): The maximum alpha square threshold the simplices shall not exceed. Default is set
src/python/gudhi/delaunay_complex.py:165
↓ 1 callers
Method
create_simplex_tree
Exports the complex into a simplex tree. :returns: A simplex tree created from the complex. :rtype: SimplexTree
src/python/gudhi/tangential_complex.py:61
↓ 1 callers
Method
cross_product
* only if points have dimension 3 */
src/common/include/gudhi/Point.h:104
↓ 1 callers
Method
current_position
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/iterators/Skeleton_blockers_blockers_iterators.h:111
↓ 1 callers
Method
deactivate
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/Skeleton_blocker_simple_traits.h:105
↓ 1 callers
Method
dereference
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/iterators/Skeleton_blockers_vertices_iterators.h:65
↓ 1 callers
Function
deserialize_from_python
src/python/gudhi/_simplex_tree.cc:36
↓ 1 callers
Function
deserialize_trivial
src/Simplex_tree/include/gudhi/Simplex_tree/serialization_utils.h:50
↓ 1 callers
Method
done
Off_reader visitor done implementation - Only points are read
src/common/include/gudhi/Points_off_io.h:83
↓ 1 callers
Method
dual
src/Persistent_cohomology/include/gudhi/Persistence_on_rectangle.h:533
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