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Functions4,084 in github.com/GUDHI/gudhi-devel

↓ 1,239 callersMethodpush_back
src/Ripser/include/gudhi/ripser.h:424
↓ 782 callersMethodpush_back
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/set_column.h:763
↓ 546 callersMethodfiltration
src/Hasse_complex/include/gudhi/Hasse_complex.h:145
↓ 428 callersMethodfind
src/Simplex_tree/include/gudhi/Simplex_tree.h:986
↓ 350 callersMethodsize
* Computes the number of landscape functions. **/
src/Persistence_representations/include/gudhi/Persistence_landscape.h:520
↓ 299 callersMethodsize
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/set_column.h:483
↓ 286 callersMethodnum_simplices
\brief Returns the number of simplices in the simplex_tree. * * This function takes time linear in the number of simplices. */
src/Simplex_tree/include/gudhi/Simplex_tree.h:845
↓ 253 callersMethodinsert_simplex_and_subfaces
src/Simplex_tree/include/gudhi/Simplex_tree.h:1240
↓ 213 callersMethodbegin
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/Skeleton_blocker_simplex.h:165
↓ 208 callersMethodend
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/Skeleton_blocker_simplex.h:169
↓ 208 callersMethodget_row_index
* @brief Returns the row index stored in the entry. * * @return @ref rowindex "Row index" of the entry. */
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/entry_types.h:217
↓ 202 callersFunctionGUDHI_TEST_FLOAT_EQUALITY_CHECK
src/common/include/gudhi/Unitary_tests_utils.h:20
↓ 202 callersMethoddimension
src/common/include/gudhi/Point.h:31
↓ 192 callersMethodfind
TODO: check which one is faster (probably doesn't matter)
src/Ripser/include/gudhi/ripser.h:121
↓ 188 callersMethodend
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/set_column.h:596
↓ 184 callersMethodsize
src/python/gudhi/_ripser.cc:47
↓ 168 callersMethodget_column_with_pivot
src/Persistence_matrix/include/gudhi/Matrix.h:2079
↓ 157 callersMethodbegin
src/GudhUI/utils/MClock.h:23
↓ 155 callersMethodend
src/GudhUI/utils/MClock.h:28
↓ 153 callersMethodsimplex_vertex_range
\brief Returns a range over the vertices of a simplex. * * The order in which the vertices are visited is the decreasing order for < on Vertex_h
src/Simplex_tree/include/gudhi/Simplex_tree.h:418
↓ 150 callersMethodget_element
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/entry_types.h:57
↓ 148 callersMethodreserve
src/Tangential_complex/include/gudhi/Tangential_complex/utilities.h:116
↓ 146 callersMethodempty
src/common/include/gudhi/simple_mdspan.h:411
↓ 141 callersMethodinsert
src/python/include/python_interfaces/Simplex_tree_interface.h:82
↓ 140 callersMethodinsert_simplex
src/Simplex_tree/include/gudhi/Simplex_tree.h:1158
↓ 137 callersMethodsize
src/Simplex_tree/include/gudhi/Simplex_tree/Simplex_tree_siblings.h:100
↓ 130 callersMethodsize
src/Coxeter_triangulation/include/gudhi/Permutahedral_representation/Ordered_set_partition_iterator.h:41
↓ 129 callersMethodend
src/Tangential_complex/include/gudhi/Tangential_complex/utilities.h:96
↓ 126 callersMethodsize
src/Tangential_complex/include/gudhi/Tangential_complex/utilities.h:100
↓ 125 callersMethodbegin
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/set_column.h:584
↓ 116 callersMethodinsert
src/GudhUI/utils/Bar_code_persistence.h:42
↓ 114 callersMethodbegin
src/Tangential_complex/include/gudhi/Tangential_complex/utilities.h:92
↓ 114 callersMethoddimension
* @brief Returns the dimension of the given sibling simplices. * * @param curr_sib Pointer to the sibling container. * @return Height of the
src/Simplex_tree/include/gudhi/Simplex_tree.h:869
↓ 113 callersMethodis_zero_column
src/Persistence_matrix/include/gudhi/Matrix.h:2060
↓ 111 callersMethoderase
src/Simplex_tree/include/gudhi/Simplex_tree/Simplex_tree_siblings.h:104
↓ 108 callersMethodsize
* Computes the number of landscape functions. **/
src/Persistence_representations/include/gudhi/Persistence_landscape_on_grid.h:738
↓ 102 callersMethodinsert_edge_as_flag
* @brief Adds a new vertex or a new edge in a flag complex, as well as all * simplices of its star, defined to maintain the property * of the
src/Simplex_tree/include/gudhi/Simplex_tree.h:1881
↓ 100 callersMethodfiltration_simplex_range
src/Hasse_complex/include/gudhi/Hasse_complex.h:123
↓ 86 callersMethodget_value
* @brief Returns the value of the element. * * @return Value of the element. */
src/Persistence_matrix/include/gudhi/Fields/Zp_field.h:388
↓ 85 callersMethodclear
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/set_column.h:520
↓ 78 callersMethodnull_simplex
\brief Returns a Simplex_handle different from all Simplex_handles * associated to the simplices in the simplicial complex. * * One can call
src/Simplex_tree/include/gudhi/Simplex_tree.h:802
↓ 73 callersFunctionget_value
src/Coxeter_triangulation/include/gudhi/Functions/Cartesian_product.h:68
↓ 71 callersMethodsize
* Returns number of all cubes in the data structure. **/
src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_base.h:232
↓ 69 callersFunctiontest_content_equality
src/Persistence_matrix/test/pm_test_utilities.h:158
↓ 68 callersMethodinsert_boundary
src/Persistence_matrix/include/gudhi/Matrix.h:1709
↓ 66 callersMethodsize
src/Ripser/include/gudhi/ripser.h:233
↓ 65 callersMethodsize
* Return a size of a vector. **/
src/Persistence_representations/include/gudhi/Persistence_vectors.h:117
↓ 64 callersMethodassign_filtration
\brief Sets the filtration value of a simplex. * \exception std::invalid_argument In debug mode, if sh is a null_simplex. */
src/Simplex_tree/include/gudhi/Simplex_tree.h:792
↓ 64 callersMethodend
src/Coxeter_triangulation/include/gudhi/Permutahedral_representation/Size_range.h:66
↓ 62 callersMethodupper_bound_dimension
\brief Returns an upper bound on the dimension of the simplicial complex. * * @note Not thread safe */
src/Simplex_tree/include/gudhi/Simplex_tree.h:909
↓ 61 callersMethodget_point
src/python/gudhi/_delaunay_complex.cc:104
↓ 60 callersMethodbegin
src/Coxeter_triangulation/include/gudhi/Permutahedral_representation/Size_range.h:64
↓ 59 callersMethodchildren
\brief Returns the children of the node in the simplex tree pointed by sh. * \exception std::invalid_argument In debug mode, if sh has no child.
src/Simplex_tree/include/gudhi/Simplex_tree.h:972
↓ 58 callersMethodadd_edge_without_blockers
* @brief Adds an edge between vertices a and b without blockers. * @details For instance, the complex contains edge 01 and 12, then calling * ad
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_complex.h:566
↓ 58 callersMethodpush_back
src/Tangential_complex/include/gudhi/Tangential_complex/utilities.h:112
↓ 56 callersMethoddestroy
* @brief Destroys the given entry. * * @param entry @ref Entry pointer. */
src/Persistence_matrix/include/gudhi/Persistence_matrix/allocators/entry_constructors.h:59
↓ 56 callersFunctionto_string
src/Coxeter_triangulation/include/gudhi/IO/output_debug_traces_to_html.h:62
↓ 55 callersMethodbegin
src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex.h:362
↓ 53 callersMethodconstruct
src/Persistence_matrix/include/gudhi/Persistence_matrix/allocators/entry_constructors.h:49
↓ 53 callersMethodpoint
src/GudhUI/model/Model.h:56
↓ 53 callersMethodto_string
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_complex.h:1530
↓ 52 callersMethodnum_vertices
\brief Returns the number of finite vertices in the triangulation. */
src/Alpha_complex/include/gudhi/Alpha_complex.h:229
↓ 51 callersFunctionsimplex_format
src/Coxeter_triangulation/include/gudhi/IO/output_debug_traces_to_html.h:132
↓ 50 callersMethodadd
src/Bottleneck_distance/include/gudhi/Neighbors_finder.h:117
↓ 50 callersMethodadd_vertex
* @brief Adds a vertex to the simplicial complex and returns its Vertex_handle. * @remark Vertex representation is contiguous. */
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_complex.h:372
↓ 50 callersMethodclear
\brief Remove all the simplices, leaving an empty complex. */
src/Simplex_tree/include/gudhi/Simplex_tree.h:2398
↓ 50 callersMethodset_element
* @brief Sets the value. * * @param element Value to store. */
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/entry_types.h:142
↓ 49 callersMethodend
src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex.h:369
↓ 48 callersMethodcreate_complex
src/Alpha_complex/include/gudhi/Alpha_complex.h:386
↓ 48 callersMethodget_pivot
src/Persistence_matrix/include/gudhi/Persistence_matrix/RU_matrix.h:805
↓ 47 callersMethodcreate_simplex_tree
:returns: A simplex tree created from the Cover complex. :rtype: SimplexTree
src/python/gudhi/nerve_gic.py:38
↓ 47 callersMethodfit_transform
(self, X, y=None)
src/python/gudhi/point_cloud/dtm.py:128
↓ 47 callersMethodnum_vertices
src/python/include/python_interfaces/delaunay_complex_interface.h:162
↓ 47 callersMethodnum_vertices
src/GudhUI/model/Model.h:336
↓ 47 callersMethodvertex_range
* @brief Returns a Complex_vertex_range over all vertices of the complex */
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_complex.h:1282
↓ 46 callersMethodsize
* Return number of points in the diagram. **/
src/Persistence_representations/include/gudhi/Persistence_intervals.h:233
↓ 43 callersMethodget_content
src/Persistence_matrix/include/gudhi/Persistence_matrix/columns/set_column.h:453
↓ 43 callersMethodinit_coefficients
\brief Initializes the coefficient field.*/
src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h:157
↓ 42 callersMethodget_number_of_columns
src/Persistence_matrix/include/gudhi/Matrix.h:1912
↓ 41 callersMethodclear
src/Ripser/include/gudhi/ripser.h:104
↓ 41 callersMethodcompute_persistent_cohomology
\brief Compute the persistent homology of the filtered simplicial * complex. * * @param[in] min_interval_length the computation discards all
src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h:173
↓ 40 callersMethodempty
src/python/include/python_interfaces/numpy_utils.h:77
↓ 40 callersMethodget_row_index
src/Persistence_matrix/test/pm_column_tests_mastermatrix.h:189
↓ 39 callersMethodinsert_cell
src/Zigzag_persistence/include/gudhi/zigzag_persistence.h:289
↓ 39 callersMethodmultiply_inplace
* @brief Stores in the first element the multiplication of two given elements in the field, * that is `(e1 * e2) % characteristic`, such that the r
src/Persistence_matrix/include/gudhi/Fields/Zp_field_operators.h:188
↓ 39 callersMethodnum_blockers
* @brief returns the number of blockers in the complex. */
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_complex.h:1015
↓ 39 callersMethodoutput_diagram
\brief Output the persistence diagram in ostream. * * The file format is the following: * p1*...*pr dim b d * * where "dim" is the
src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h:590
↓ 39 callersMethodshow
src/GudhUI/utils/Bar_code_persistence.h:55
↓ 38 callersMethodadd
* @brief Returns the sum of two elements in the field. * * @param e1 First element. * @param e2 Second element. * @return `(e1 + e2) % cha
src/Persistence_matrix/include/gudhi/Fields/Zp_field_operators.h:128
↓ 37 callersFunctionalmost_equal
* A procedure used to compare doubles. Typically given two doubles \f$ A \f$ and \f$ B \f$, comparing both with * \f$ A == B \f$ is not good idea. In
src/Persistence_representations/include/gudhi/common_persistence_representations.h:65
↓ 37 callersMethoddimension
\brief Dimension of the triangulation. */
src/Coxeter_triangulation/include/gudhi/Freudenthal_triangulation.h:93
↓ 37 callersMethoddistance
src/Persistence_representations/include/gudhi/Persistence_vectors.h:547
↓ 37 callersFunctionget_column_content_via_iterators
src/Persistence_matrix/test/pm_test_utilities.h:74
↓ 36 callersMethodinsert_simplex
src/Toplex_map/include/gudhi/Toplex_map.h:130
↓ 36 callersMethodmultiply
* @brief Returns the multiplication of two elements in the field. * * @param e1 First element. * @param e2 Second element. * @return `(e1
src/Persistence_matrix/include/gudhi/Fields/Zp_field_operators.h:179
↓ 35 callersMethodbegin
Restart the timer
src/common/include/gudhi/Clock.h:29
↓ 35 callersMethodget_characteristic
* @brief Returns the current characteristic. * * @return The value of the current characteristic. */
src/Persistence_matrix/include/gudhi/Fields/Zp_field.h:381
↓ 35 callersFunctionpow
(n)
src/python/test/test_representations.py:235
↓ 35 callersMethodsize
src/common/include/gudhi/simple_mdspan.h:409
↓ 34 callersMethodfit
Args: X ((n,d)-array of float|(n,n)-array of float|Sequence[Iterable[int]]): coordinates of the points, or distan
src/python/gudhi/clustering/tomato.py:111
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