Code
Hub
Workspaces
Following
Trending
Connect
MCP
copy
Create free account
hub
/
github.com/GUDHI/gudhi-devel
/ functions
Functions
4,084 in github.com/GUDHI/gudhi-devel
⨍
Functions
4,084
◇
Types & classes
709
↓ 1 callers
Method
edge_handle
src/Contraction/include/gudhi/Contraction/Edge_profile.h:49
↓ 1 callers
Method
end
src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h:256
↓ 1 callers
Method
end_draw_edges
src/GudhUI/view/Viewer.cpp:147
↓ 1 callers
Method
end_draw_points
src/GudhUI/view/Viewer.cpp:118
↓ 1 callers
Method
end_draw_triangles
src/GudhUI/view/Viewer.cpp:173
↓ 1 callers
Method
estimate_scale
Compute estimated scale of a point cloud or a distance matrix. Parameters ---------- X : numpy array of shape (n
src/python/gudhi/cover_complex.py:391
↓ 1 callers
Method
euler_characteristic
src/Tangential_complex/include/gudhi/Tangential_complex/Simplicial_complex.h:314
↓ 1 callers
Method
extended_persistence
This function retrieves good values for extended persistence, and separate the diagrams into the Ordinary, Relative, Extended+ and Extended- s
src/python/gudhi/simplex_tree.py:169
↓ 1 callers
Method
facet_range
\brief Returns a range of permutahedral representations of facets of the simplex. * The dimension of the simplex must be strictly positive. */
src/Coxeter_triangulation/include/gudhi/Permutahedral_representation.h:114
↓ 1 callers
Method
fill_and_pair
Locally pair simplices around each square. Work implicitly from input, only store the filtration value of critical vertices (squares are already in in
src/Persistent_cohomology/include/gudhi/Persistence_on_rectangle.h:215
↓ 1 callers
Function
fill_meshes
src/Coxeter_triangulation/include/gudhi/IO/output_meshes_to_medit.h:34
↓ 1 callers
Method
filtration
* Return the filtration of a cell pointed by the Simplex_handle, or +inf for `null_simplex()`. **/
src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex.h:147
↓ 1 callers
Method
finished
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/iterators/Skeleton_blockers_vertices_iterators.h:78
↓ 1 callers
Method
fit
(self, ts, y=None)
src/python/gudhi/point_cloud/timedelay.py:68
↓ 1 callers
Method
fit
Args: X (numpy.array): coordinates for mass points.
src/python/gudhi/point_cloud/dtm.py:40
↓ 1 callers
Method
fit
Fit the Padding class on a list of persistence diagrams. Parameters: X (list of n x 2 or n x 1 numpy arrays): input pers
src/python/gudhi/representations/preprocessing.py:216
↓ 1 callers
Method
fit
Fit the Landscape class on a list of persistence diagrams: if any of the values in **sample_range** is numpy.nan, replace it with the corresp
src/python/gudhi/representations/vector_methods.py:242
↓ 1 callers
Method
fit_transform
(self, X, projection="sum", scaler=preprocessing.MinMaxScaler())
src/python/gudhi/_kepler_mapper.py:37
↓ 1 callers
Function
generate_grid_points_on_torus_d
src/common/include/gudhi/random_point_generators.h:189
↓ 1 callers
Function
generate_points_sphere
\brief Generate nbP points uniformly on a (dim-1)-sphere * and insert them in W. */
src/Witness_complex/example/generators.h:131
↓ 1 callers
Function
get_amb_d
src/Coxeter_triangulation/include/gudhi/Functions/Cartesian_product.h:28
↓ 1 callers
Function
get_boundaries
src/Zigzag_persistence/example/example_zigzag_filtration_as_input_loop.cpp:53
↓ 1 callers
Method
get_coboundary_of_a_cell
src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h:493
↓ 1 callers
Function
get_cod_d
src/Coxeter_triangulation/include/gudhi/Functions/Cartesian_product.h:40
↓ 1 callers
Method
get_column_with_pivot
src/Persistence_matrix/include/gudhi/Persistence_matrix/RU_matrix.h:795
↓ 1 callers
Method
get_contrast
(self)
src/python/gudhi/representations/vector_methods.py:918
↓ 1 callers
Method
get_current_infinite_intervals
src/Zigzag_persistence/include/gudhi/filtered_zigzag_persistence.h:565
↓ 1 callers
Function
get_directions
src/Zigzag_persistence/example/example_zigzag_filtration_as_input_loop.cpp:99
↓ 1 callers
Method
get_edges
src/Ripser/include/gudhi/ripser.h:700
↓ 1 callers
Method
get_element
* @private */
src/Persistence_matrix/include/gudhi/Matrix.h:278
↓ 1 callers
Function
get_filtration_values
src/Zigzag_persistence/example/example_zigzag_filtration_as_input_loop.cpp:85
↓ 1 callers
Method
get_max_dimension
src/Persistence_matrix/include/gudhi/Persistence_matrix/RU_matrix.h:702
↓ 1 callers
Method
get_optimal_parameters_for_agglomerative_clustering
Compute optimal scale and resolutions for a point cloud or a distance matrix. Parameters ---------- X : numpy ar
src/python/gudhi/cover_complex.py:422
↓ 1 callers
Function
get_ordered_column_contents
src/Persistence_matrix/test/pm_column_tests.h:24
↓ 1 callers
Function
get_ordered_rows
src/Persistence_matrix/test/pm_column_tests.h:44
↓ 1 callers
Method
get_pivot
src/Persistence_matrix/include/gudhi/Persistence_matrix/Position_to_index_overlay.h:868
↓ 1 callers
Function
get_seed
src/Coxeter_triangulation/include/gudhi/Functions/Cartesian_product.h:52
↓ 1 callers
Method
get_u_point
src/Bottleneck_distance/include/gudhi/Persistence_graph.h:172
↓ 1 callers
Method
get_x_range
* This procedure returns x-range of a given persistence diagram. **/
src/Persistence_representations/include/gudhi/Persistence_intervals.h:87
↓ 1 callers
Function
getint
src/python/gudhi/clustering/_tomato.cc:34
↓ 1 callers
Method
give_equivalent_vertex
* @brief : Given an address in the current complex, it returns the * corresponding address in 'other_complex'. * It assumes that other_complex h
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_link_complex.h:192
↓ 1 callers
Method
give_instructions
src/GudhUI/view/Viewer_instructor.cpp:81
↓ 1 callers
Method
impose_lower_star_filtration_from_vertices
src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_base.h:1022
↓ 1 callers
Method
impose_lower_star_filtration_from_vertices
src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h:529
↓ 1 callers
Method
increment
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/iterators/Skeleton_blockers_simplices_iterators.h:266
↓ 1 callers
Method
init
src/Persistent_cohomology/include/gudhi/Persistence_on_rectangle.h:174
↓ 1 callers
Method
init
\brief Off_reader visitor init implementation. * * The init parameters are set from OFF file header. * Dimension value is required in order
src/common/include/gudhi/Points_off_io.h:41
↓ 1 callers
Method
init_next_dimension
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/internal/Trie.h:239
↓ 1 callers
Method
init_scene
src/GudhUI/view/Viewer.cpp:41
↓ 1 callers
Method
initialize_bounding_box
src/GudhUI/view/Viewer_instructor.cpp:25
↓ 1 callers
Method
insert_cell
src/Zigzag_persistence/include/gudhi/filtered_zigzag_persistence.h:498
↓ 1 callers
Method
insert_independent_simplex
src/Toplex_map/include/gudhi/Lazy_toplex_map.h:100
↓ 1 callers
Method
insert_simplex_raw
src/Simplex_tree/include/gudhi/Simplex_tree.h:1109
↓ 1 callers
Function
is_big_endian
src/Ripser/utilities/ripser.cc:83
↓ 1 callers
Method
is_contractible
* @brief %Test if the complex is reducible using a strategy defined in the class * (by default it tests if the complex is a cone) * @details Not
src/Skeleton_blocker/include/gudhi/Skeleton_blocker_complex.h:1162
↓ 1 callers
Method
is_exact
\brief Check exact option * @return Exact option. */
src/Cech_complex/include/gudhi/Cech_complex.h:114
↓ 1 callers
Function
is_file_perseus
(file)
src/python/example/periodic_cubical_complex_barcode_persistence_from_perseus_file_example.py:22
↓ 1 callers
Method
is_fitted
(self)
src/python/gudhi/representations/vector_methods.py:439
↓ 1 callers
Method
is_gabriel
src/Alpha_complex/include/gudhi/Alpha_complex/Alpha_kernel_d.h:126
↓ 1 callers
Method
is_pure_pseudomanifold
src/Tangential_complex/include/gudhi/Tangential_complex/Simplicial_complex.h:339
↓ 1 callers
Method
is_valid
@brief Returns if the OFF file read operation was successful or not. * * @return OFF file read status. */
src/common/include/gudhi/Points_3D_off_io.h:169
↓ 1 callers
Method
k_n_n
src/Persistence_representations/include/gudhi/Persistence_intervals.h:483
↓ 1 callers
Method
key
src/Hasse_complex/include/gudhi/Hasse_complex.h:128
↓ 1 callers
Function
make_embedding
src/Coxeter_triangulation/include/gudhi/Functions/Embed_in_Rd.h:85
↓ 1 callers
Method
make_profile
src/Contraction/include/gudhi/Contraction/Edge_profile.h:106
↓ 1 callers
Function
make_tc
src/Tangential_complex/benchmark/benchmark_tc.cpp:286
↓ 1 callers
Method
max_dist_to_diagonal
src/Bottleneck_distance/include/gudhi/Persistence_graph.h:188
↓ 1 callers
Method
maximal_face
Off_reader visitor maximal_face implementation - Only points are read
src/common/include/gudhi/Points_off_io.h:80
↓ 1 callers
Method
membership
src/Toplex_map/include/gudhi/Lazy_toplex_map.h:153
↓ 1 callers
Method
min_cost
* returns the point that minimizes the quadric. * It inverses the quadric if its determinant is higher that a given threshold . * If the determi
src/Contraction/example/Garland_heckbert/Error_quadric.h:146
↓ 1 callers
Function
negation
src/Coxeter_triangulation/include/gudhi/Functions/Negation.h:76
↓ 1 callers
Method
next_raw
src/Ripser/include/gudhi/ripser.h:752
↓ 1 callers
Method
nodes_by_label
src/Simplex_tree/include/gudhi/Simplex_tree.h:2781
↓ 1 callers
Method
num_extra_bits
src/Ripser/include/gudhi/ripser.h:492
↓ 1 callers
Method
num_simplices_by_dimension
src/python/include/python_interfaces/Simplex_tree_interface.h:192
↓ 1 callers
Method
number_of_projections_to_R
* The function gives the number of possible projections to R. This function is required by the * Real_valued_topological_data concept. **/
src/Persistence_representations/include/gudhi/Persistence_heat_maps.h:588
↓ 1 callers
Method
number_of_vectorize_functions
* This function return the number of functions that allows vectorization of persistence heat map. It is required * in a concept Vectorized_topologi
src/Persistence_representations/include/gudhi/Persistence_heat_maps.h:574
↓ 1 callers
Method
on_add_edge_without_blockers
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/Skeleton_blocker_complex_visitor.h:71
↓ 1 callers
Method
on_add_vertex
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/Skeleton_blocker_complex_visitor.h:67
↓ 1 callers
Method
on_changed_edge
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/Skeleton_blocker_complex_visitor.h:75
↓ 1 callers
Method
on_collected
* @brief Called during the collecting phase (when a cost is assigned to the edges), for each edge collected. */
src/Contraction/include/gudhi/Contraction/policies/Contraction_visitor.h:51
↓ 1 callers
Method
on_contracted
src/Contraction/include/gudhi/Skeleton_blocker_contractor.h:70
↓ 1 callers
Method
on_contracting
* @brief Called when an edge is about to be contracted and replaced by a vertex whose position is *placement. */
src/Contraction/include/gudhi/Contraction/policies/Contraction_visitor.h:61
↓ 1 callers
Method
on_delete_blocker
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/Skeleton_blocker_complex_visitor.h:81
↓ 1 callers
Method
on_non_valid
* @brief Called for each selected edge which cannot be contracted because the ValidContractionPredicate is false */
src/Contraction/include/gudhi/Contraction/policies/Contraction_visitor.h:72
↓ 1 callers
Method
on_remove_edge
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/Skeleton_blocker_complex_visitor.h:73
↓ 1 callers
Method
on_remove_vertex
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/Skeleton_blocker_complex_visitor.h:69
↓ 1 callers
Method
on_selected
* @brief Called during the processing phase (when edges are contracted), for each edge that is selected. */
src/Contraction/include/gudhi/Contraction/policies/Contraction_visitor.h:56
↓ 1 callers
Method
on_swaped_edge
src/Skeleton_blocker/include/gudhi/Skeleton_blocker/Skeleton_blocker_complex_visitor.h:77
↓ 1 callers
Method
output
src/Collapse/include/gudhi/Flag_complex_edge_collapser.h:279
↓ 1 callers
Function
pe
(pd)
src/python/test/test_representations.py:272
↓ 1 callers
Method
persistence_pairs
This function returns a list of persistence birth and death simplices pairs. :returns: A list of persistence simplices intervals. :rt
src/python/gudhi/simplex_tree.py:314
↓ 1 callers
Method
persistent_betti_numbers
This function returns the persistent Betti numbers of the complex. :param from_value: The persistence birth limit to be added in the
src/python/gudhi/cubical_complex.py:311
↓ 1 callers
Function
perturb
src/Tangential_complex/include/gudhi/Tangential_complex.h:1575
↓ 1 callers
Function
pick_n_random_points
Subsample a point set by picking random vertices. :param points: The input point set. :type points: Iterable[Iterable[float]] Or :p
src/python/gudhi/subsampling.py:67
↓ 1 callers
Function
plongementDansR8
(pointDansCP2)
data/points/generator/aurelien_alvarez_surfaces_in_R8.py:47
↓ 1 callers
Function
plongementListeDansR8
(listePointsDansCP2)
data/points/generator/aurelien_alvarez_surfaces_in_R8.py:62
↓ 1 callers
Method
plot
src/Persistence_representations/include/gudhi/Persistence_landscape_on_grid.h:1305
↓ 1 callers
Method
plot_OFF
Create a .off file that can be visualized (e.g. with Geomview). \brief Creates a .off file called SC.off for 3D visualization, which contains the 2-sk
src/Nerve_GIC/include/gudhi/GIC.h:1111
↓ 1 callers
Method
plus_equal
src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Field_Zp.h:79
← previous
next →
1,001–1,100 of 4,084, ranked by callers