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Functions557 in github.com/GMOD/jbrowse

⨍ Functions 557◇ Types & classes 41
↓ 471 callersMethodget
(field)
src/JBrowse/Store/SeqFeature/_PairCache.js:5
↓ 462 callersFunctionexpect
(actual)
tests/js_tests/lib/jasmine-1.2.0/jasmine.js:512
↓ 197 callersFunctionit
(desc, func)
tests/js_tests/lib/jasmine-1.2.0/jasmine.js:486
↓ 101 callersFunctionruns
(func)
tests/js_tests/lib/jasmine-1.2.0/jasmine.js:522
↓ 94 callersMethodlog
(msg)
src/JBrowse/View/GranularRectLayout.js:28
↓ 89 callersFunctionwaitsFor
(latchFunction, optional_timeoutMessage, optional_timeout)
tests/js_tests/lib/jasmine-1.2.0/jasmine.js:545
↓ 52 callersMethodtoString
()
src/JBrowse/Model/BlobFilehandleWrapper.js:25
↓ 50 callersFunctiondescribe
(description, specDefinitions)
tests/js_tests/lib/jasmine-1.2.0/jasmine.js:589
↓ 39 callersMethodassert_element
(self, expression , time=5)
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:87
↓ 33 callersMethod_get
(field)
src/JBrowse/Store/SeqFeature/_PairCache.js:8
↓ 28 callersMethodclick
( self )
tests/selenium_tests/volvox_biodb_test.py:215
↓ 24 callersMethodchildren
()
src/JBrowse/Store/SeqFeature/_PairCache.js:26
↓ 23 callersMethoddo_typed_query
( self, text )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:121
↓ 22 callersFunctionquery
( query, options )
src/JBrowse/Store/Names/Hash.js:130
↓ 20 callersMethodassert_no_js_errors
( self )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:116
↓ 20 callersMethodturn_off_track
( self, tracktext )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:212
↓ 19 callersMethodassert_elements
( self, expression )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:98
↓ 18 callersMethod_get
(field)
src/JBrowse/Store/SeqFeature/_SpanCache.js:13
↓ 18 callersMethodturn_on_track
( self, tracktext )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:209
↓ 17 callersFunctionfeatCallback
src/JBrowse/View/Track/HTMLFeatures.js:624
↓ 16 callersFunctionbeforeEach
(beforeEachFunction)
tests/js_tests/lib/jasmine-1.2.0/jasmine.js:557
↓ 15 callersMethodget
(field)
src/JBrowse/Store/SeqFeature/BAM.js:124
↓ 14 callersMethodassert_no_element
( self, expression )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:113
↓ 12 callersFunctionarrayCopy
(src, srcOffset, dest, destOffset, count)
src/JBrowse/Util/arrayCopy.js:8
↓ 12 callersFunctionerrorCallback
src/JBrowse/View/Track/Alignments2.js:370
↓ 11 callersMethodid
()
src/JBrowse/Store/SeqFeature/_PairCache.js:2
↓ 10 callersFunctionwrap
(method)
src/JBrowse/Util/dot-object.js:75
↓ 8 callersMethodexport_track
( self, track_name, region, file_format, button )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:149
↓ 8 callersFunctionisUndefined
(obj)
tests/js_tests/lib/jasmine-1.2.0/jasmine-html.js:304
↓ 8 callersFunctiononComplete
()
tests/js_tests/lib/jasmine-1.2.0/jasmine.js:1998
↓ 7 callersMethodclose_dialog
( self, title )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:160
↓ 7 callersMethodget
(field)
src/JBrowse/Store/SeqFeature/CRAM.js:68
↓ 7 callersMethodinitialize
(left,right)
src/JBrowse/View/GranularRectLayout.js:77
↓ 7 callersFunctionk
(g,i,n,m)
tests/drupal/jquery.js:80
↓ 7 callersMethodparent
()
src/JBrowse/Store/SeqFeature/BAM.js:136
↓ 7 callersFunctionspecPluralizedFor
(count)
tests/js_tests/lib/jasmine-1.2.0/jasmine-html.js:312
↓ 6 callersFunctionS
(a,b)
tests/drupal/jquery.js:22
↓ 6 callersFunction_process
(v, mod)
src/JBrowse/Util/dot-object.js:5
↓ 6 callersFunctioncomponentFromStr
(numStr, percent)
plugins/NeatCanvasFeatures/js/View/FeatureGlyph/Box.js:124
↓ 6 callersFunctionhasKey
(obj, keyName)
tests/js_tests/lib/jasmine-1.2.0/jasmine.js:878
↓ 5 callersFunctionC
(g,i)
tests/drupal/jquery.js:96
↓ 5 callersFunctionL
(g,i)
tests/drupal/jquery.js:104
↓ 5 callersMethodactionchains
( self )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:215
↓ 5 callersFunctionadler32
(adler, /* byte[] */ buf, index, len)
src/JBrowse/Util/jszlib.js:4040
↓ 5 callersFunctionb
(j,s)
tests/drupal/jquery.js:23
↓ 5 callersFunctiondeleteUniqueIDSerial
(featureData)
tests/js_tests/spec/BigBed.spec.js:168
↓ 5 callersMethoddoes_element_exist
(self, expression)
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:239
↓ 5 callersFunctione
(h,l)
tests/drupal/jquery.js:142
↓ 5 callersFunctionfinish
Called when the current pending resource of the specified type has finished loading. Executes the associated callback (if any) and loads the next
src/lazyload.js:96
↓ 5 callersFunctionisArrayOrObject
(val)
src/JBrowse/Util/dot-object.js:42
↓ 5 callersFunctionrecordVal
()
src/JBrowse/ConfigAdaptor/conf.js:32
↓ 5 callersFunctionsleep
(ms)
tests/electron_tests/spec.js:22
↓ 5 callersMethodtags
()
src/JBrowse/Store/SeqFeature/BAM.js:111
↓ 5 callersMethodwaits_for_scroll
( self, location )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:303
↓ 4 callersFunctionY
(a,b)
tests/drupal/jquery.js:19
↓ 4 callersFunctiona
()
tests/drupal/jquery.js:23
↓ 4 callersMethodassert_track
( self, tracktext )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:109
↓ 4 callersFunctionfmtNum
( num )
src/JBrowse/View/Track/SNPCoverage.js:243
↓ 4 callersFunctionisEmptyObject
(val)
src/JBrowse/Util/dot-object.js:46
↓ 4 callersFunctionisObject
(val)
src/JBrowse/Util/dot-object.js:38
↓ 4 callersFunctionmakeFilterFilter
( condition )
src/JBrowse/View/Track/_VariantDetailMixin.js:245
↓ 4 callersFunctiontryIt
(f)
tests/js_tests/lib/jasmine-1.2.0/jasmine.js:608
↓ 4 callersMethodwait_for_dialog_disappearance
( self, t=5)
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:173
↓ 3 callersMethod_do_typed_query_and_wait
( self, text, num_of_results )
tests/selenium_tests/volvox_REST_names_test.py:61
↓ 3 callersMethodaddRect
(rect, data)
src/JBrowse/View/GranularRectLayout.js:87
↓ 3 callersFunctionarrayCopy_fast
(src, dest, destOffset)
src/JBrowse/Util/arrayCopy.js:45
↓ 3 callersFunctioncreateNode
Creates and returns an HTML element with the specified name and attributes. @method createNode @param {String} name element name @param {Object
src/lazyload.js:75
↓ 3 callersMethoddiscardRange
* Given a range of interbase coordinates, deletes all data dealing with that range
src/JBrowse/View/GranularRectLayout.js:149
↓ 3 callersFunctionfa
(a)
tests/drupal/jquery.js:23
↓ 3 callersFunctionformatError
(error)
src/JBrowse/Browser.js:475
↓ 3 callersFunctiongetfetch
(url, opts = {})
src/JBrowse/Model/XHRBlob.js:28
↓ 3 callersFunctionhandler
( evt )
src/JBrowse/View/Track/BlockBased.js:802
↓ 3 callersFunctionhex2
src/JBrowse/View/FeatureGlyph/UCSC/BED.js:31
↓ 3 callersMethodis_track_on
( self, tracktext )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:204
↓ 3 callersFunctionload
Loads the specified resources, or the next resource of the specified type in the queue if no resources are specified. If a resource of the specified
src/lazyload.js:164
↓ 3 callersFunctionmakeFeatures
()
src/JBrowse/Store/SeqFeature/SNPCoverage.js:142
↓ 3 callersMethodmenu_item_click
( self, text )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:187
↓ 3 callersFunctionoverlaps
( featStart, featEnd, spanStart, spanEnd )
src/JBrowse/View/Track/HTMLFeatures.js:775
↓ 3 callersMethodoverview_rubberband
Executes a rubberband gesture from start_pct to end_pct on the overview bar
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:192
↓ 3 callersMethodpairedFeature
()
src/JBrowse/Store/SeqFeature/_PairCache.js:25
↓ 3 callersFunctionparseCigar
(cigar)
src/JBrowse/Store/SeqFeature/_MismatchesMixin.js:5
↓ 3 callersFunctionparsePath
(path, sep)
src/JBrowse/Util/dot-object.js:50
↓ 3 callersMethodread
(buffer, offset = 0, length, position)
src/JBrowse/Model/BlobFilehandleWrapper.js:11
↓ 3 callersMethodscroll
( self )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:276
↓ 3 callersFunctiontestAll
( func, inOut )
tests/js_tests/spec/Util.spec.js:12
↓ 3 callersFunctionwhichArgChange
(isSelected, value)
src/JBrowse/View/Track/Combination/CombinationDialog.js:231
↓ 2 callersMethod_click_track
( self, tracktext )
tests/selenium_tests/jbrowse_selenium/track_selectors.py:37
↓ 2 callersMethod_close_selector
( self )
tests/selenium_tests/jbrowse_selenium/track_selectors.py:85
↓ 2 callersMethod_find_track_by_text
( self, tracktext )
tests/selenium_tests/jbrowse_selenium/track_selectors.py:69
↓ 2 callersMethod_rubberband
( self, el_xpath, start_pct, end_pct, modkey = None )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:127
↓ 2 callersMethod_waits_for_element
( self, expression, time=5 )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:224
↓ 2 callersFunctionaddDiv
( start, end, parentDiv, masked, voidClass, isAdded )
src/JBrowse/View/Track/HTMLFeatures.js:815
↓ 2 callersFunctionaddOverlaps
( s, e, feat, spans, invSpans, voidClass )
src/JBrowse/View/Track/HTMLFeatures.js:847
↓ 2 callersFunctionaddSeq
(s)
src/JBrowse/Store/SeqFeature/UnindexedFasta/File.js:101
↓ 2 callersFunctionbinOverlap
( bp, isRightEnd )
src/JBrowse/Store/SeqFeature/Coverage.js:35
↓ 2 callersMethodclick_search_disambiguation
( self, trackName, buttonText)
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:260
↓ 2 callersFunctioncopyOnly
(mid)
plugins/HideTrackLabels/js/HideTrackLabels.profile.js:1
↓ 2 callersFunctioncopyOnly
(mid)
plugins/RegexSequenceSearch/js/RegexSequenceSearch.profile.js:1
↓ 2 callersFunctioncopyOnly
(mid)
plugins/NeatHTMLFeatures/js/NeatHTMLFeatures.profile.js:1
↓ 2 callersFunctioncopyOnly
(mid)
plugins/CategoryUrl/js/CategoryUrl.profile.js:1
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