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Functions557 in github.com/GMOD/jbrowse

⨍ Functions 557◇ Types & classes 41
↓ 2 callersFunctioncopyOnly
(mid)
plugins/NeatCanvasFeatures/js/NeatCanvasFeatures.profile.js:1
↓ 2 callersFunctioncopyOnly
(mid)
plugins/DebugEvents/js/DebugEvents.profile.js:1
↓ 2 callersFunctioncssName
(str)
src/JBrowse/GenomeView.js:2260
↓ 2 callersFunctiondlog
()
src/JBrowse/Store/SeqFeature/BigWig/RequestWorker.js:28
↓ 2 callersFunctiondrawRectangle
(ID, yPos, height, fRect)
src/JBrowse/View/Track/SNPCoverage.js:114
↓ 2 callersFunctiondrawVarianceBand
( plusminus, fill, label )
src/JBrowse/View/Track/Wiggle/XYPlot.js:203
↓ 2 callersFunctionfetchwrapper
(f)
src/JBrowse/Model/XHRBlob.js:15
↓ 2 callersFunctionfocusedSpecName
()
tests/js_tests/lib/jasmine-1.2.0/jasmine-html.js:125
↓ 2 callersFunctionforEachBin
( start, end, callback )
src/JBrowse/Store/SeqFeature/SNPCoverage.js:78
↓ 2 callersMethodgetItemAt
(x)
src/JBrowse/View/GranularRectLayout.js:37
↓ 2 callersMethodget_track_labels_containing
( self, string )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:218
↓ 2 callersFunctiongrabFeats
( key )
src/JBrowse/Store/SeqFeature/Mask.js:112
↓ 2 callersFunctiongrabStore
(store)
src/JBrowse/Store/SeqFeature/Mask.js:62
↓ 2 callersFunctionisDefined
(obj)
tests/js_tests/lib/jasmine-1.2.0/jasmine-html.js:308
↓ 2 callersFunctionis_selected
(node)
src/JBrowse/View/TrackList/Faceted.js:728
↓ 2 callersFunctionka
(a,b,d)
tests/drupal/jquery.js:17
↓ 2 callersFunctionla
(a,b,d)
tests/drupal/jquery.js:17
↓ 2 callersFunctionlshift
(num, bits)
src/JBrowse/Model/CSIIndex.js:17
↓ 2 callersFunctionma
(a,b,d)
tests/drupal/jquery.js:20
↓ 2 callersFunctionmakeDiv
( start, end, parentDiv, masked, voidClass )
src/JBrowse/View/Track/HTMLFeatures.js:792
↓ 2 callersFunctionmakeRadio
(args, parent)
plugins/RegexSequenceSearch/js/View/SearchSeqDialog.js:87
↓ 2 callersFunctionmakeTrack
()
src/JBrowse/View/Track/Combination.js:578
↓ 2 callersFunctionna
(a,b)
tests/drupal/jquery.js:20
↓ 2 callersFunctionnextRecord
()
src/JBrowse/Store/SeqFeature/_MismatchesMixin.js:93
↓ 2 callersFunctionoa
(a,b,d)
tests/drupal/jquery.js:21
↓ 2 callersFunctionqa
(a)
tests/drupal/jquery.js:22
↓ 2 callersFunctionrealChange
()
src/JBrowse/View/FileDialog.js:240
↓ 2 callersFunctionrender
( underlyingRefSeq )
src/JBrowse/View/Track/_VariantDetailMixin.js:77
↓ 2 callersMethodrender
()
website/core/Footer.js:14
↓ 2 callersFunctionrenderText
src/JBrowse/View/FeatureGlyph/Box.js:310
↓ 2 callersFunctionrgbaToHex
(rgb)
plugins/NeatCanvasFeatures/js/View/FeatureGlyph/Box.js:152
↓ 2 callersFunctionrshift
(num, bits)
src/JBrowse/Model/CSIIndex.js:20
↓ 2 callersMethodselect_refseq
( self, name )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:273
↓ 2 callersFunctionsetContent
( dialog, content )
src/JBrowse/View/Track/BlockBased.js:1036
↓ 2 callersFunctionshowDetails
()
tests/js_tests/lib/jasmine-1.2.0/jasmine-html.js:298
↓ 2 callersFunctionstyleFunc
(feature, stylename)
src/JBrowse/View/FeatureGlyph/Segments.js:59
↓ 2 callersFunctiontestWithConfig
(config)
tests/js_tests/spec/RESTStore.spec.js:6
↓ 2 callersFunctionxa
(a)
tests/drupal/jquery.js:71
↓ 1 callersFunction_findCategory
( obj, names, path )
src/JBrowse/View/TrackList/Hierarchical.js:166
↓ 1 callersFunction_finish
()
src/lazyload.js:165
↓ 1 callersMethod_get
(field)
src/JBrowse/Store/SeqFeature/BAM.js:119
↓ 1 callersMethod_getBrowser
( self )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:50
↓ 1 callersMethod_get_tags
()
src/JBrowse/Store/SeqFeature/BAM.js:102
↓ 1 callersFunction_loadRecur
( config, upstreamConf )
src/JBrowse/ConfigManager.js:138
↓ 1 callersMethod_waits_for_elements
( self, expression, time=5)
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:221
↓ 1 callersMethod_waits_for_load
(self)
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:308
↓ 1 callersMethod_waits_for_no_element
( self, expression, time=5 )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:227
↓ 1 callersFunctionarrayCopy_slow
(src, srcOffset, dest, destOffset, count)
src/JBrowse/Util/arrayCopy.js:37
↓ 1 callersMethodautocomplete
( self )
tests/selenium_tests/volvox_REST_names_test.py:48
↓ 1 callersMethodbam
( self )
tests/selenium_tests/volvox_biodb_test.py:113
↓ 1 callersMethodbaseURL
( self )
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:79
↓ 1 callersMethodbigwig
( self )
tests/selenium_tests/volvox_biodb_test.py:163
↓ 1 callersFunctionbinNumber
( bp )
src/JBrowse/Store/SeqFeature/SNPCoverage.js:65
↓ 1 callersFunctionbptReadNode
(offset)
src/JBrowse/Store/SeqFeature/BigWig.js:237
↓ 1 callersFunctioncanBePaired
(alignment)
src/JBrowse/Store/SeqFeature/_SpanCache.js:27
↓ 1 callersFunctioncanBePaired
(alignment)
src/JBrowse/Store/SeqFeature/_PairCache.js:29
↓ 1 callersMethodcanvasfeatures
( self )
tests/selenium_tests/volvox_biodb_test.py:67
↓ 1 callersFunctioncigarToMismatches
(ops, seq)
src/JBrowse/Store/SeqFeature/_MismatchesMixin.js:8
↓ 1 callersFunctionclamp
(val,min,max)
src/JBrowse/View/FeatureGlyph/Box.js:309
↓ 1 callersFunctioncolourNameToHex
(colour)
plugins/NeatCanvasFeatures/js/View/FeatureGlyph/Box.js:164
↓ 1 callersMethodcombination
( self )
tests/selenium_tests/volvox_biodb_test.py:258
↓ 1 callersMethodcontext_menus
( self )
tests/selenium_tests/volvox_biodb_test.py:187
↓ 1 callersFunctionconvertResponseBodyToText
(byteArray)
src/jdataview-1.1-patch.X.js:412
↓ 1 callersMethodcram
( self )
tests/selenium_tests/volvox_biodb_test.py:124
↓ 1 callersFunctioncreateReporterDom
(version)
tests/js_tests/lib/jasmine-1.2.0/jasmine-html.js:147
↓ 1 callersFunctioncreateVariableInjectionPlugin
website/siteConfig.js:4
↓ 1 callersFunctionda
(a,b,d,e)
tests/drupal/jquery.js:22
↓ 1 callersFunctiondiv
( attr, children )
src/JBrowse/View/FileDialog.js:164
↓ 1 callersFunctiondiv
( attr, children )
src/JBrowse/View/Dialog/OpenDirectory.js:70
↓ 1 callersFunctiondiv
( attr, children )
src/JBrowse/View/Dialog/Preferences.js:105
↓ 1 callersMethoddo_elements_exist
(self, expression)
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:250
↓ 1 callersMethoddocUrl
(doc, language)
website/core/Footer.js:4
↓ 1 callersFunctionexpectDeepEqual
( func, input, output )
tests/js_tests/spec/Util.spec.js:6
↓ 1 callersMethodexport
( self )
tests/selenium_tests/volvox_biodb_test.py:130
↓ 1 callersFunctionfinish
()
src/JBrowse/View/Track/BlockBased.js:580
↓ 1 callersFunctiongenerateMD
(target, query, cigar)
src/JBrowse/Store/SeqFeature/BAM.js:13
↓ 1 callersMethodget
(field)
src/JBrowse/Store/SeqFeature/_SpanCache.js:10
↓ 1 callersFunctiongetChar
()
src/JBrowse/Model/TabixIndex.js:142
↓ 1 callersFunctiongetColorHex
(color)
plugins/NeatCanvasFeatures/js/View/FeatureGlyph/Box.js:130
↓ 1 callersFunctiongetEnv
Populates the <code>env</code> variable with user agent and feature test information. @method getEnv @private
src/lazyload.js:125
↓ 1 callersFunctiongetGlobal
()
tests/js_tests/lib/jasmine-1.2.0/jasmine.js:43
↓ 1 callersFunctiongetString
()
src/JBrowse/Model/TabixIndex.js:147
↓ 1 callersFunctiongetTemplateCoordLocal
(refCoord)
src/JBrowse/Store/SeqFeature/_MismatchesMixin.js:105
↓ 1 callersMethodid
()
src/JBrowse/Store/SeqFeature/BAM.js:115
↓ 1 callersMethodid
()
src/JBrowse/Store/SeqFeature/CRAM.js:59
↓ 1 callersFunctioninflate_trees_fixed
(bl, bd, tl, td, z)
src/JBrowse/Util/jszlib.js:3999
↓ 1 callersFunctionisIndex
(k)
src/JBrowse/Util/dot-object.js:34
↓ 1 callersMethodisRangeClear
(left, right)
src/JBrowse/View/GranularRectLayout.js:57
↓ 1 callersMethodis_one_row
(self)
tests/selenium_tests/jbrowse_selenium/JBrowseTest.py:235
↓ 1 callersMethodis_right_num_of_entries
( self, num )
tests/selenium_tests/volvox_REST_names_test.py:68
↓ 1 callersFunctionmdToMismatches
(mdstring, cigarOps, cigarMismatches, seq)
src/JBrowse/Store/SeqFeature/_MismatchesMixin.js:80
↓ 1 callersFunctionnew_gridline
( glclass, position )
src/JBrowse/View/Track/GridLines.js:56
↓ 1 callersFunctionparseCigar
(cigar)
src/JBrowse/Store/SeqFeature/BAM.js:9
↓ 1 callersFunctionparseKey
(key, val)
src/JBrowse/Util/dot-object.js:26
↓ 1 callersFunctionparseWord
()
src/JBrowse/Store/TrackMetaData.js:734
↓ 1 callersFunctionpctString
( count )
src/JBrowse/View/Track/SNPCoverage.js:246
↓ 1 callersFunctionpollGecko
Begins polling to determine when the specified stylesheet has finished loading in Gecko. Polling stops when all pending stylesheets have loaded or a
src/lazyload.js:281
↓ 1 callersFunctionpollWebKit
Begins polling to determine when pending stylesheets have finished loading in WebKit. Polling stops when all pending stylesheets have loaded or afte
src/lazyload.js:317
↓ 1 callersFunctionqueriesMatch
( q1, q2 )
src/JBrowse/Store/SeqFeature/REST.js:131
↓ 1 callersMethodreadFile
()
src/JBrowse/Model/BlobFilehandleWrapper.js:17
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