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Functions1,029 in github.com/FDA/openfda

⨍ Functions 1,029◇ Types & classes 287↳ Endpoints 1
Method__init__
(self, tables, join_keys)
openfda/registration/pipeline.py:117
Method__init__
(self, harmonized_file)
openfda/spl/annotate.py:132
Method__init__
(self)
openfda/faers/xml_to_json.py:18
Method__init__
(self, max_records_per_file=-1)
openfda/faers/xml_to_json.py:73
Method__init__
(self, harmonized_file)
openfda/faers/annotate.py:151
Method__init__
(self, device_problem_codes_ref, patient_problem_codes_ref)
openfda/maude/pipeline.py:374
Method__init__
(self, harmonized_dict)
openfda/adae/annotate.py:149
Method__init__
(self)
openfda/device_harmonization/pipeline.py:264
Method__init__
(self, csv2json_db)
openfda/device_recall/pipeline.py:219
Method__init__
(self, harmonized_file)
openfda/res/annotate.py:184
Method__init__
(self, filebase, num_shards, create_if_missing)
openfda/parallel/sharded_db.py:17
Method__init__
(self)
openfda/parallel/mapreduce.py:33
Method__init__
(self, msg, child_message=None)
openfda/parallel/mapreduce.py:38
Method__init__
(self, shuffle_queues)
openfda/parallel/mapreduce.py:54
Method__init__
(self, filenames_or_glob, mr_input)
openfda/parallel/mapreduce.py:67
Method__init__
(self, filename, **kw)
openfda/parallel/outputs.py:19
Method__init__
(self, filename)
openfda/parallel/outputs.py:52
Method__init__
(self, filename, **kw)
openfda/parallel/outputs.py:69
Method__init__
(self, filename)
openfda/parallel/outputs.py:116
Method__init__
(self, *args, **kw)
openfda/parallel/watchdog.py:10
Method__init__
(self, split, **kw)
openfda/parallel/inputs.py:41
Method__init__
(self, depth=1)
openfda/parallel/inputs.py:71
Method__init__
(self, delimiter, quoting, fixed_splits=None)
openfda/parallel/inputs.py:126
Method__init__
(self, column='')
openfda/parallel/inputs.py:200
Method__init__
(self, delimiter=',', quoting=csv.QUOTE_MINIMAL, fieldnames=None,
openfda/parallel/inputs.py:223
Method__init__
(self, delimiter, quoting)
openfda/parallel/inputs.py:266
Method__init__
(self, split)
openfda/parallel/inputs.py:285
Method__init__
(self, endpoint, chunks=250000, partition='', query=None)
openfda/export/pipeline.py:115
Method__init__
(self, output_dir)
openfda/export/pipeline.py:346
Method__iter__
(self)
openfda/parallel/mapreduce.py:104
Method__iter__
(self)
openfda/parallel/inputs.py:53
Method__repr__
(self)
openfda/common.py:94
Method__repr__
(self)
openfda/index_util.py:472
Method__repr__
(self)
openfda/tests/api_test_helpers.py:12
Method__repr__
(self)
openfda/parallel/mapreduce.py:82
Method__repr__
(self)
openfda/parallel/inputs.py:35
Method__repr__
(self)
openfda/parallel/inputs.py:50
Method__str__
(self)
openfda/parallel/mapreduce.py:42
Function_cleaner
A helper function that is used for renaming dictionary keys and formatting dates.
openfda/device_clearance/transform.py:57
Function_cleaner
A helper function that is used for removing and renaming dictionary keys. Dates are also reformated for Elasticsearch and removed if null.
openfda/device_pma/transform.py:41
Method_cleaner
Helper function to rename keys and purge any keys that are not in the map.
openfda/drugsfda/pipeline.py:109
Method_cleaner
Helper function to rename keys and purge any keys that are not in the map.
openfda/drugsfda/pipeline.py:155
Method_cleaner
Helper function to rename keys and purge any keys that are not in the map.
openfda/drugsfda/pipeline.py:227
Method_cleaner
Helper function to rename keys and purge any keys that are not in the map.
openfda/drugsfda/pipeline.py:261
Method_cleaner
Helper function to rename keys and purge any keys that are not in the map.
openfda/drugsfda/pipeline.py:299
Method_cleaner
Helper function to rename keys and purge any keys that are not in the map.
openfda/drugsfda/pipeline.py:346
Method_cleaner
Helper function to rename keys and purge any keys that are not in the map.
openfda/drugsfda/pipeline.py:380
Method_cleaner
(k, v)
openfda/annotation_table/pipeline.py:247
Method_cleaner
Helper function to rename keys and purge any keys that are not in the map.
openfda/annotation_table/pipeline.py:342
Method_cleaner
Helper function to rename keys and purge any keys that are not in the map.
openfda/ndc/pipeline.py:150
Method_cleaner
Helper function to rename keys and purge any keys that are not in the map.
openfda/ndc/pipeline.py:208
Method_cleaner
Helper function to rename keys and purge any keys that are not in the map.
openfda/nsde/pipeline.py:52
Method_cleaner
A helper function that is used for renaming dictionary keys and formatting dates.
openfda/device_recall/pipeline.py:130
Method_cleaner
(k, v)
openfda/device_recall/pipeline.py:248
Method_cleaner
A helper function used for removing and renaming dictionary keys.
openfda/classification/pipeline.py:78
Method_cleaner
Helper function to rename keys and purge any keys that are not in the map.
openfda/tobacco_problem/pipeline.py:81
Method_cleaner
A helper function that is used formatting dates.
openfda/covid19serology/pipeline.py:44
Method_concat
(addr, part_keys)
openfda/device_recall/pipeline.py:269
Method_data
(self)
openfda/spl/pipeline.py:304
Method_data
(self)
openfda/faers/pipeline.py:204
Method_data
(self)
openfda/maude/pipeline.py:794
Method_data
(self)
openfda/device_recall/pipeline.py:432
Method_data
(self)
openfda/res/pipeline.py:254
Method_data
(self)
openfda/export/pipeline.py:481
Function_fn
(*args, **kw)
openfda/tests/api_test_helpers.py:106
Method_handler
(_, ord_dict)
openfda/parallel/inputs.py:81
Method_prune
A helper function used for removing and renaming dictionary keys.
openfda/registration/pipeline.py:509
Method_replace_date
(k, v)
openfda/registration/pipeline.py:200
Method_run
(self)
openfda/faers/pipeline.py:223
Method_run
(self)
openfda/maude/pipeline.py:339
Method_run
(self)
openfda/downloadstats/pipeline.py:73
Method_run
(self)
openfda/downloadstats/pipeline.py:93
Method_run
(self)
openfda/device_recall/pipeline.py:453
Method_run
(self)
openfda/res/pipeline.py:281
Method_run
(self)
openfda/covid19serology/pipeline.py:24
Method_run
(self)
openfda/export/pipeline.py:296
Method_run
(self)
openfda/export/pipeline.py:389
Method_run
(self)
openfda/export/pipeline.py:407
Method_run
(self)
openfda/export/pipeline.py:437
Method_run
(self)
openfda/export/pipeline.py:487
Function_run_mapper
(mapper, shuffle_queues, split)
openfda/parallel/mapreduce.py:121
Function_run_reducer
(reducer, queue, tmp_prefix, output_format, output_tmp, i, num_shards)
openfda/parallel/mapreduce.py:133
Method_safe_get
(value)
openfda/maude/pipeline.py:650
Methodadd
(self, k, v)
openfda/parallel/mapreduce.py:57
Methodadd_fn
(id, json)
openfda/device_udi/tests/pipeline_test.py:33
Functionassert_count_contains
(query, expected_terms)
openfda/tests/api_test_helpers.py:52
Functionassert_count_top
Verify that all of the terms in `terms` are found in the top-N count results.
openfda/tests/api_test_helpers.py:42
Functionassert_greater
Just like self.assertTrue(a > b), but with a nicer default message.
openfda/tests/api_test_helpers.py:128
Functionassert_total
(query, minimum)
openfda/tests/api_test_helpers.py:26
Functionassert_total_exact
(query, total)
openfda/tests/api_test_helpers.py:34
Functionassert_unii
(query, expected_result)
openfda/tests/api_test_helpers.py:62
Functionaws_profile
()
openfda/config.py:57
Functionbasic_cleaner
Cleaning function so that the output of Elasticsearch mimics the API. That is, remove internal keys like `@field` and `field_exact`.
openfda/export/pipeline.py:245
Methodchange_key
(obj, entry, rename_map)
openfda/substance_data/pipeline.py:658
Methodcleaner
Callback function passed into transform_dict. Takes a key/value tuple and either passes them through, does a transformation either or drops
openfda/caers/pipeline.py:74
Methodcleaner
(k, v)
openfda/res/pipeline.py:154
Functionclear_and_load
(es, index_name, type_name, mapping_file)
openfda/elasticsearch_requests.py:16
Functioncmd
(args)
openfda/common.py:141
Functioncombine
(product_file, spl_extract, rx_extract, unii_extract, upc_extr
openfda/annotation_table/combine_harmonization.py:66
Methodcomplete
(self)
openfda/tasks.py:13
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