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Functions1,029 in github.com/FDA/openfda

↓ 1 callersMethodoutput
(self)
openfda/adae/pipeline.py:714
↓ 1 callersMethodoutput
(self)
openfda/adae/pipeline.py:740
↓ 1 callersMethodoutput
(self)
openfda/nsde/pipeline.py:73
↓ 1 callersMethodoutput
(self)
openfda/tests/luigi_test.py:8
↓ 1 callersMethodoutput
(self)
openfda/tests/luigi_test.py:18
↓ 1 callersMethodoutput
(self)
openfda/device_harmonization/pipeline.py:248
↓ 1 callersMethodoutput
(self)
openfda/device_harmonization/pipeline.py:307
↓ 1 callersMethodoutput
(self)
openfda/device_recall/pipeline.py:107
↓ 1 callersMethodoutput
(self)
openfda/device_recall/pipeline.py:169
↓ 1 callersMethodoutput
(self)
openfda/device_recall/pipeline.py:373
↓ 1 callersMethodoutput
(self)
openfda/device_recall/pipeline.py:409
↓ 1 callersMethodoutput
(self)
openfda/classification/pipeline.py:35
↓ 1 callersMethodoutput
(self)
openfda/classification/pipeline.py:49
↓ 1 callersMethodoutput
(self)
openfda/classification/pipeline.py:116
↓ 1 callersMethodoutput
(self)
openfda/device_pma/pipeline.py:31
↓ 1 callersMethodoutput
(self)
openfda/device_pma/pipeline.py:45
↓ 1 callersMethodoutput
(self)
openfda/device_pma/pipeline.py:95
↓ 1 callersMethodoutput
(self)
openfda/res/pipeline.py:205
↓ 1 callersMethodoutput
(self)
openfda/res/pipeline.py:228
↓ 1 callersMethodoutput
(self)
openfda/device_udi/pipeline.py:48
↓ 1 callersMethodoutput
(self)
openfda/device_udi/pipeline.py:226
↓ 1 callersMethodoutput
(self)
openfda/device_udi/pipeline.py:285
↓ 1 callersMethodoutput
(self)
openfda/tobacco_problem/pipeline.py:102
↓ 1 callersMethodoutput
(self)
openfda/export/pipeline.py:386
↓ 1 callersMethodoutput_format
(self)
openfda/parallel/luigi_support.py:26
↓ 1 callersFunctionpairwise
Helper function taken from python docs to turn a list into a list of pairwise tuples. [s0, s1, s2, s3] -> [(s0,s1), (s1,s2), (s2, s3)]
openfda/export/pipeline.py:173
↓ 1 callersFunctionparallel_extract
(files, worker)
openfda/annotation_table/unii_harmonization.py:23
↓ 1 callersFunctionparse_demo_file
Parse a FAERS demo file. Returns a dictionary mapping from safety report ID to case number.
openfda/faers/xml_to_json.py:39
↓ 1 callersFunctionpivot_values
Takes a list of (name, value) tuples, and `pivots` them, returning a dictionary from name -> [values]. This is frequently used when join
openfda/parallel/reducer.py:107
↓ 1 callersFunctionread_harmonized_file
Create a dictionary that is keyed by NDA/ANDA application numbers. Used to join against the application_number value.
openfda/drugsfda/annotate.py:15
↓ 1 callersFunctionread_harmonized_file
Create a dictionary that is keyed by spl_id.
openfda/ndc/annotate.py:18
↓ 1 callersFunctionread_harmonized_file
Create a dictionary that is keyed by spl_set_id.
openfda/spl/annotate.py:18
↓ 1 callersFunctionread_harmonized_file
Create a dictionary that is keyed by drug names. First brand_name, then brand_name + brand_name_suffix, finally generic_name. Used to join agai
openfda/faers/annotate.py:21
↓ 1 callersFunctionread_harmonized_file
Create a dictionary that is keyed by UPC and NDC.
openfda/res/annotate.py:13
↓ 1 callersFunctionread_json_file
(json_file)
openfda/drugsfda/annotate.py:10
↓ 1 callersFunctionread_json_file
Reads an ElasticSearch style multi-json file: Each line contains a single JSON record. Yields one object for each line
openfda/ndc/annotate.py:8
↓ 1 callersFunctionread_json_file
Reads an ElasticSearch style multi-json file: Each line contains a single JSON record. Yields one object for each line
openfda/spl/annotate.py:8
↓ 1 callersFunctionread_json_file
(json_file)
openfda/faers/annotate.py:16
↓ 1 callersFunctionread_json_file
(json_file)
openfda/adae/annotate.py:26
↓ 1 callersMethodrecommended_shards
(self)
openfda/parallel/outputs.py:39
↓ 1 callersMethodreduce
(self, key, values, output)
openfda/parallel/reducer.py:77
↓ 1 callersMethodreduce_finished
Called after all values have been reduced. The result of this call is returned to the caller of `mapreduce`.
openfda/parallel/reducer.py:80
↓ 1 callersMethodreduce_shard
(self, input_db, output_db)
openfda/parallel/reducer.py:44
↓ 1 callersFunctionrefresh_index
(index_name)
openfda/index_util.py:28
↓ 1 callersFunctionremap_reg_listing_file
(input_file, output_file)
openfda/registration/pipeline.py:92
↓ 1 callersFunctionremove_namespace
SPL have namespaces that don't play nice with python's libxml. For now we just remove namespaces to work around this.
openfda/annotation_table/extract_unii.py:32
↓ 1 callersFunctionremove_namespace
SPL files have namespaces that don't play nice with python's libxml. For now we just remove namespaces to work around this.
openfda/spl/extract.py:19
↓ 1 callersMethodrequires
(self)
openfda/tasks.py:55
↓ 1 callersMethodrequires
(self)
openfda/device_recall/pipeline.py:166
↓ 1 callersMethodrun
(self)
openfda/common.py:108
↓ 1 callersMethodrun
(self)
openfda/substance_data/pipeline.py:44
↓ 1 callersMethodrun
(self)
openfda/caers/pipeline.py:171
↓ 1 callersMethodrun
(self)
openfda/ndc/pipeline.py:46
↓ 1 callersMethodrun
(self)
openfda/ndc/pipeline.py:61
↓ 1 callersMethodrun
(self)
openfda/ndc/pipeline.py:171
↓ 1 callersMethodrun
(self)
openfda/registration/pipeline.py:532
↓ 1 callersMethodrun
common.quiet_cmd(['aws', '--cli-read-timeout=3600', '--profile=' + config.aws_profile(), 's3', 's
openfda/spl/pipeline.py:166
↓ 1 callersMethodrun
(self)
openfda/faers/pipeline.py:134
↓ 1 callersMethodrun
(self)
openfda/maude/pipeline.py:584
↓ 1 callersMethodrun
(self)
openfda/device_clearance/pipeline.py:39
↓ 1 callersMethodrun
(self)
openfda/nsde/pipeline.py:76
↓ 1 callersMethodrun
(self)
openfda/device_harmonization/pipeline.py:310
↓ 1 callersMethodrun
(self)
openfda/device_recall/pipeline.py:110
↓ 1 callersMethodrun
(self)
openfda/classification/pipeline.py:119
↓ 1 callersMethodrun
(self)
openfda/device_pma/pipeline.py:68
↓ 1 callersMethodrun
(self)
openfda/res/pipeline.py:114
↓ 1 callersMethodrun
(self)
openfda/device_udi/pipeline.py:51
↓ 1 callersMethodrun
(self)
openfda/device_udi/pipeline.py:229
↓ 1 callersMethodrun
(self)
openfda/tobacco_problem/pipeline.py:105
↓ 1 callersFunctionset_deep
Helper function that sets a value deep into a dictionary by passing the deep address as a '.' delimited string of keys, for instance, `a.b.c` i
scripts/generate_fields_yaml.py:66
↓ 1 callersMethodset_field_dot_notation
(self, val, field, json)
openfda/adae/pipeline.py:553
↓ 1 callersMethodset_value_in_json
(self, nodeset, json_fields, json)
openfda/adae/pipeline.py:534
↓ 1 callersMethodshuffle
(self)
openfda/parallel/reducer.py:50
↓ 1 callersFunctionstrip_unicode
(raw_str, remove_crlf = False)
openfda/common.py:263
↓ 1 callersFunctiontest_replace_some_docs
()
openfda/tests/index_util_test.py:46
↓ 1 callersFunctiontimestamp_from_filename
Returns a timestamp corresponding to the year/quarter in `filename`.
openfda/faers/xml_to_json.py:32
↓ 1 callersFunctiontoText
(elems)
openfda/spl/spl_to_json.js:7
↓ 1 callersFunctiontweak_yaml
()
scripts/generate_fields_yaml.py:159
↓ 1 callersFunctionvalidate_date
(date)
openfda/spl/fix_date.py:16
↓ 1 callersFunctionwalk_glob
(file_pattern, crawl_dir)
openfda/export/pipeline.py:185
Method__enter__
(self)
openfda/common.py:45
Method__enter__
(self)
openfda/parallel/watchdog.py:36
Method__exit__
(self, type, value, traceback)
openfda/common.py:48
Method__exit__
(self, type, value, traceback)
openfda/parallel/watchdog.py:40
Method__init__
(self, path='')
openfda/config.py:32
Method__init__
(self, *args, **kw)
openfda/tasks.py:52
Method__init__
(self, fn, *args, **kw)
openfda/common.py:27
Method__init__
(self, _dict)
openfda/common.py:58
Method__init__
(self, code, stdout, stderr)
openfda/common.py:89
Method__init__
(self, quiet, input_stream, output_stream=sys.stdout, prefix='')
openfda/common.py:100
Method__init__
(self, es_host, index_name, type_name, docid_key, incremental)
openfda/index_util.py:394
Method__init__
(self, doc_lookup)
openfda/drugsfda/pipeline.py:216
Method__init__
(self, doc_lookup)
openfda/drugsfda/pipeline.py:283
Method__init__
(self, doc_lookup)
openfda/drugsfda/pipeline.py:364
Method__init__
(self, applications_db_path, products_db_path, applications_docs_db_path, submissions_db_path,
openfda/drugsfda/pipeline.py:535
Method__init__
(self, harmonized_file)
openfda/drugsfda/annotate.py:113
Method__init__
(self, index_db)
openfda/annotation_table/pipeline.py:398
Method__init__
(self, index_db)
openfda/annotation_table/pipeline.py:593
Method__init__
(self, package_db)
openfda/ndc/pipeline.py:281
Method__init__
(self, harmonized_file)
openfda/ndc/annotate.py:102
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