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Functions22,481 in github.com/EarlhamInst/KAT

⨍ Functions 22,481◇ Types & classes 25,829
↓ 14 callersFunctionclear
deps/seqan-library-2.0.0/include/seqan/roi_io/roi_record.h:110
↓ 14 callersFunctioncode
deps/boost/boost/regex/pattern_except.hpp:51
↓ 14 callersFunctioncurrent_exception_std_exception
deps/boost/boost/exception/detail/exception_ptr.hpp:268
↓ 14 callersMethoddata
Direct access to the data array.
deps/jellyfish-2.2.0/include/jellyfish/mer_dna.hpp:194
↓ 14 callersFunctiongcd
deps/boost/boost/rational.hpp:100
↓ 14 callersFunctionget_last_error
deps/boost/boost/interprocess/detail/win32_api.hpp:1252
↓ 14 callersMethodget_last_node
deps/boost/boost/intrusive/slist.hpp:189
↓ 14 callersFunctionhash_value
deps/boost/boost/array.hpp:417
↓ 14 callersFunctionignore_unused_variable_warning
deps/boost/boost/test/detail/workaround.hpp:46
↓ 14 callersMethodinsert
Insert key k. Returns previous value of k
deps/jellyfish-2.2.0/include/jellyfish/bloom_common.hpp:77
↓ 14 callersFunctioninsert_commit
deps/boost/boost/intrusive/sgtree_algorithms.hpp:349
↓ 14 callersMethodinsert_equal
deps/boost/boost/intrusive/bstree_algorithms.hpp:1114
↓ 14 callersFunctionisOutputFileArgument
deps/seqan-library-2.0.0/include/seqan/arg_parse/arg_parse_argument.h:396
↓ 14 callersFunctionis_sorted
deps/boost/boost/algorithm/cxx11/is_sorted.hpp:72
↓ 14 callersFunctionlength
deps/seqan-library-2.0.0/include/seqan/journaled_set/journaled_set_journal_trace_descriptor.h:259
↓ 14 callersMethodlength
Returns the length of the overlap.
deps/seqan-library-2.0.0/include/seqan/consensus/overlapper.h:148
↓ 14 callersFunctionlock_helper
deps/boost/boost/thread/lock_algorithms.hpp:88
↓ 14 callersMethodlower_bound
lower_bound
deps/boost/boost/intrusive/bstree.hpp:324
↓ 14 callersFunctionmake4
deps/boost/libs/locale/test/test_utf.cpp:33
↓ 14 callersFunctionmake4
deps/boost/libs/locale/test/test_codepage_converter.cpp:37
↓ 14 callersFunctionmaybe_throw_exception
auxiliary func called by parse_printf_directive for centralising error handling it either throws if user sets the corresponding flag, or does nothing.
deps/boost/boost/format/parsing.hpp:88
↓ 14 callersFunctionnth_finder
deps/boost/boost/algorithm/string/finder.hpp:131
↓ 14 callersFunctionparentRepLength
deps/seqan-library-2.0.0/include/seqan/index/index_wotd.h:598
↓ 14 callersFunctionportable_name
deps/boost/libs/filesystem/src/portability.cpp:85
↓ 14 callersFunctionpower
deps/boost/boost/algorithm/algorithm.hpp:43
↓ 14 callersMethodprefix
deps/boost/boost/regex/v4/match_results.hpp:319
↓ 14 callersMethodput
deps/boost/boost/chrono/io/duration_put.hpp:104
↓ 14 callersFunctionradixPass
deps/seqan-library-2.0.0/include/seqan/index/radix.h:47
↓ 14 callersMethodrdbuf
deps/seqan-library-2.0.0/include/seqan/stream/virtual_stream.h:299
↓ 14 callersFunctionremove
deps/boost/boost/filesystem/operations.hpp:662
↓ 14 callersMethodremoveChild
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_tree.h:983
↓ 14 callersMethodreprobe_len
deps/jellyfish-2.2.0/include/jellyfish/offsets_key_value.hpp:120
↓ 14 callersFunctionseedSize
deps/seqan-library-2.0.0/include/seqan/seeds/seeds_seed_base.h:469
↓ 14 callersMethodset_value
deps/boost/libs/locale/src/icu/date_time.cpp:93
↓ 14 callersMethodsetf
deps/boost/boost/regex/v4/perl_matcher.hpp:392
↓ 14 callersMethodshift_left
Shift a base to the left and the leftmost base is return . "ACGT", shift_left('A') becomes "CGTA" and 'A' is returned
deps/jellyfish-2.2.0/swig/python/jellyfish.py:125
↓ 14 callersFunctionstrerror_r
deps/jellyfish-2.2.0/include/jellyfish/err.hpp:71
↓ 14 callersFunctionsystem_complete
deps/boost/libs/filesystem/src/operations.cpp:1970
↓ 14 callersFunctiontemp_directory_path
contributed by Jeff Flinn
deps/boost/libs/filesystem/src/operations.cpp:1900
↓ 14 callersFunctiontest_good_system_clock
deps/boost/libs/chrono/test/io/time_point_input.cpp:49
↓ 14 callersFunctiontest_output_impl
deps/boost/boost/core/lightweight_test.hpp:109
↓ 14 callersFunctionticks_per_second
Return the number of ticks in a second
deps/boost/boost/date_time/time_duration.hpp:78
↓ 14 callersFunctiontransform
deps/seqan-library-2.0.0/include/seqan/sequence/string_packed.h:1773
↓ 14 callersMethodtransform
deps/boost/boost/regex/v4/cpp_regex_traits.hpp:580
↓ 14 callersFunctiontry_lock_until
deps/boost/boost/thread/lock_types.hpp:424
↓ 14 callersMethodunconst
deps/boost/boost/intrusive/detail/tree_iterator.hpp:154
↓ 14 callersFunctionvalueDestruct
deps/seqan-library-2.0.0/include/seqan/sequence/string_packed.h:1473
↓ 13 callersFunctionSWIG_This
deps/jellyfish-2.2.0/swig/python/swig_wrap.cpp:2182
↓ 13 callersFunction_computeAlignment
deps/seqan-library-2.0.0/include/seqan/seeds/banded_chain_alignment_impl.h:1156
↓ 13 callersFunction_dataValue
deps/seqan-library-2.0.0/include/seqan/basic/holder_tristate.h:441
↓ 13 callersFunction_toPointer
deps/seqan-library-2.0.0/include/seqan/modifier/modifier_string.h:487
↓ 13 callersFunction_toText
deps/seqan-library-2.0.0/include/seqan/arg_parse/arg_parse_ctd_support.h:54
↓ 13 callersFunctionall_of_equal
deps/boost/boost/algorithm/cxx11/all_of.hpp:60
↓ 13 callersFunctionallocPage
deps/seqan-library-2.0.0/include/seqan/file/file_page.h:199
↓ 13 callersFunctionappendRawPod
deps/seqan-library-2.0.0/include/seqan/basic/basic_stream.h:1185
↓ 13 callersFunctionbegin
deps/boost/boost/container/detail/tree.hpp:790
↓ 13 callersFunctionbegin
deps/boost/boost/test/utils/foreach.hpp:93
↓ 13 callersFunctionbegin
deps/seqan-library-2.0.0/include/seqan/index/index_esa_algs.h:699
↓ 13 callersMethodbegin
iterator support
deps/boost/boost/array.hpp:76
↓ 13 callersMethodbegin
deps/boost/boost/locale/boundary/index.hpp:139
↓ 13 callersFunctionbeginPosition
deps/seqan-library-2.0.0/include/seqan/align/align_cols.h:312
↓ 13 callersFunctioncalculateProbability
deps/seqan-library-2.0.0/include/seqan/alignment_free/kmer_functions.h:370
↓ 13 callersMethodcanonical
deps/jellyfish-2.2.0/include/jellyfish/file_header.hpp:86
↓ 13 callersFunctionclear
deps/seqan-library-2.0.0/include/seqan/index/index_esa_stree.h:2263
↓ 13 callersFunctionclone_from
deps/boost/boost/intrusive/sgtree.hpp:431
↓ 13 callersMethodcompare
deps/jellyfish-2.2.0/lib/jsoncpp.cpp:2066
↓ 13 callersFunctioncreate
deps/seqan-library-2.0.0/include/seqan/basic/holder_simple.h:198
↓ 13 callersFunctioncreate_directories
deps/boost/libs/filesystem/src/operations.cpp:1038
↓ 13 callersMethoddataSize
used by buffer handlers ...
deps/seqan-library-2.0.0/include/seqan/pipe/pool_base.h:935
↓ 13 callersMethodday_of_week
added for streaming
deps/boost/boost/date_time/date_generators.hpp:396
↓ 13 callersFunctiondecrement
deps/boost/boost/program_options/detail/config_file.hpp:86
↓ 13 callersMethoddetach
deps/boost/libs/thread/src/win32/thread.cpp:478
↓ 13 callersMethodfailed
deps/boost/boost/concept/detail/msvc.hpp:27
↓ 13 callersFunctionfindEdge
deps/seqan-library-2.0.0/include/seqan/graph_align/graph_impl_align.h:700
↓ 13 callersFunctionfindSet
deps/seqan-library-2.0.0/include/seqan/misc/union_find.h:323
↓ 13 callersFunctionfind_first
deps/boost/boost/algorithm/string/find.hpp:78
↓ 13 callersFunctiongetIdByName
deps/seqan-library-2.0.0/include/seqan/seq_io/fai_index.h:197
↓ 13 callersFunctioninplace_destroy
deps/boost/boost/regex/v4/perl_matcher_non_recursive.hpp:44
↓ 13 callersFunctioninsert
deps/seqan-library-2.0.0/include/seqan/misc/set.h:234
↓ 13 callersFunctionisListArgument
deps/seqan-library-2.0.0/include/seqan/arg_parse/arg_parse_argument.h:265
↓ 13 callersMethodisPaired
src/filter_sequence.hpp:165
↓ 13 callersFunctionis_other
deps/boost/boost/filesystem/operations.hpp:327
↓ 13 callersMethodis_special
deps/boost/boost/date_time/time_system_counted.hpp:106
↓ 13 callersFunctioniterator_advance
deps/boost/boost/intrusive/detail/iterator.hpp:146
↓ 13 callersMethodkey
Gets the user supplied key.
tests/gtest/gtest.h:17886
↓ 13 callersFunctionlength
deps/seqan-library-2.0.0/include/seqan/sequence/string_set_dependent_generous.h:159
↓ 13 callersFunctionlengthSum
deps/seqan-library-2.0.0/include/seqan/sequence/string_set_base.h:1228
↓ 13 callersFunctionnumVertices
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_hmm.h:217
↓ 13 callersMethodopen
deps/boost/libs/locale/src/shared/message.cpp:71
↓ 13 callersMethodpolyA
Change the mer to a homopolymer of A
deps/jellyfish-2.2.0/swig/python/jellyfish.py:101
↓ 13 callersFunctionportable_posix_name
deps/boost/libs/filesystem/src/portability.cpp:69
↓ 13 callersFunctionref
deps/boost/boost/core/ref.hpp:131
↓ 13 callersMethodremainder
deps/jellyfish-2.2.0/include/jellyfish/divisor.hpp:86
↓ 13 callersMethodremove
<b>Effects</b>: Removes all the elements that compare equal to value. No destructors are called. <b>Throws</b>: If std::equal_to<value_type> throws.
deps/boost/boost/intrusive/slist.hpp:1598
↓ 13 callersFunctionscoreGapExtendHorizontal
deps/seqan-library-2.0.0/include/seqan/align_profile/score_profile_seq.h:337
↓ 13 callersFunctionscoreGapExtendVertical
deps/seqan-library-2.0.0/include/seqan/align_profile/score_profile_seq.h:387
↓ 13 callersMethodsemantic
deps/boost/libs/program_options/src/options_description.cpp:192
↓ 13 callersFunctionset
deps/seqan-library-2.0.0/include/seqan/basic/tuple_base.h:303
↓ 13 callersFunctionsetValue
deps/seqan-library-2.0.0/include/seqan/index/index_fm_rank_dictionary_naive.h:167
↓ 13 callersFunctionsplay_down
deps/boost/boost/intrusive/splaytree_algorithms.hpp:529
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