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Functions22,481 in github.com/EarlhamInst/KAT

↓ 16 callersFunctionFilePath
deps/jellyfish-2.2.0/unit_tests/gtest/gtest.h:3549
↓ 16 callersFunctionSEQAN_ASSERT_MSG
deps/seqan-library-2.0.0/include/seqan/basic/debug_test_system.h:2579
↓ 16 callersFunction_recordSegment
deps/seqan-library-2.0.0/include/seqan/align/dp_trace_segment.h:319
↓ 16 callersFunction_repeatMaskValue
deps/seqan-library-2.0.0/include/seqan/index/repeat_base.h:129
↓ 16 callersMethodallocation_command
deps/boost/boost/container/string.hpp:280
↓ 16 callersMethodassign
deps/boost/boost/regex/v4/basic_regex.hpp:453
↓ 16 callersFunctionassignValueI1
deps/seqan-library-2.0.0/include/seqan/basic/triple_base.h:337
↓ 16 callersFunctionatEnd
deps/seqan-library-2.0.0/include/seqan/stream/adapt_ios.h:318
↓ 16 callersFunctionbF
(b0,b1)
deps/boost/libs/locale/doc/html/jquery.js:16
↓ 16 callersMethodbase
deps/boost/boost/intrusive/detail/reverse_iterator.hpp:71
↓ 16 callersMethodclone
deps/boost/libs/locale/src/shared/mo_lambda.cpp:61
↓ 16 callersMethodcounter_len
Length of counter field in binary/sorted format
deps/jellyfish-2.2.0/include/jellyfish/file_header.hpp:104
↓ 16 callersFunctiondiagnostic_information
deps/boost/boost/exception/detail/exception_ptr.hpp:474
↓ 16 callersFunctiondo_regex_match
deps/boost/boost/regex/icu.hpp:427
↓ 16 callersMethodend
deps/boost/boost/unordered/unordered_map.hpp:1333
↓ 16 callersFunctionfree_raw_heap_memory
deps/boost/boost/thread/win32/thread_heap_alloc.hpp:33
↓ 16 callersFunctiongetAnnotation
deps/seqan-library-2.0.0/include/seqan/store/store_annotation.h:345
↓ 16 callersMethodget_bits
Get bits [start, start+len). start must be < 2k, len <= sizeof(base_type) and start+len < 2k. No checks performed. start and len are in bits, not base
deps/jellyfish-2.2.0/include/jellyfish/mer_dna.hpp:475
↓ 16 callersMethodget_future
result retrieval
deps/boost/boost/thread/future.hpp:3729
↓ 16 callersMethodget_istream
@brief returns the compressed input istream
deps/seqan-library-2.0.0/include/seqan/stream/zipstream/zipstream.h:204
↓ 16 callersMethodget_rep
deps/boost/boost/date_time/time_system_counted.hpp:110
↓ 16 callersMethodgetoffset
deps/boost/boost/regex/v4/basic_regex_creator.hpp:192
↓ 16 callersFunctioninsertGap
deps/seqan-library-2.0.0/include/seqan/align/gaps_base.h:446
↓ 16 callersFunctioniota
deps/boost/boost/algorithm/cxx11/iota.hpp:28
↓ 16 callersMethodis_open
deps/boost/libs/locale/src/icu/time_zone.cpp:84
↓ 16 callersMethodis_special
check to see if time is a special value
deps/boost/boost/date_time/time.hpp:121
↓ 16 callersFunctionlast_finder
deps/boost/boost/algorithm/string/finder.hpp:91
↓ 16 callersFunctionlength
deps/seqan-library-2.0.0/include/seqan/align/gaps_array.h:335
↓ 16 callersMethodmax
deps/jellyfish-2.2.0/include/jellyfish/dumper.hpp:89
↓ 16 callersFunctionnormalize
deps/boost/boost/locale/conversion.hpp:159
↓ 16 callersFunctionparentEdgeLength
deps/seqan-library-2.0.0/include/seqan/index/index_wotd.h:526
↓ 16 callersFunctionparse_command_line
deps/boost/boost/program_options/detail/parsers.hpp:118
↓ 16 callersMethodposition
deps/boost/boost/regex/v4/match_results.hpp:151
↓ 16 callersMethodreset
deps/boost/boost/thread/tss.hpp:100
↓ 16 callersFunctionshared_count
deps/boost/boost/smart_ptr/detail/shared_count.hpp:135
↓ 16 callersMethodsize
Returns number of arguments in the store; mostly used for testing
deps/boost/boost/test/utils/runtime/argument.hpp:79
↓ 16 callersMethodsplice
<b>Requires</b>: it is an iterator to an element in *this. <b>Effects</b>: Transfers all the elements of list x to this list, before the the element
deps/boost/boost/intrusive/slist.hpp:1375
↓ 16 callersFunctiontime_zone
deps/boost/boost/locale/formatting.hpp:634
↓ 16 callersMethodval_len
Read a Jellyfish database sequentially
deps/jellyfish-2.2.0/swig/python/jellyfish.py:282
↓ 16 callersFunctionweight
deps/seqan-library-2.0.0/include/seqan/index/shape_gapped.h:418
↓ 16 callersFunctionwindows_name
deps/boost/libs/filesystem/src/portability.cpp:75
↓ 15 callersFunction_copyGraph
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_hmm.h:145
↓ 15 callersMethodadd
deps/boost/boost/thread/future.hpp:1151
↓ 15 callersMethodalign
deps/seqan-library-2.0.0/include/seqan/bam_io/cigar.h:444
↓ 15 callersFunctionallocate_raw_heap_memory
deps/boost/boost/thread/win32/thread_heap_alloc.hpp:23
↓ 15 callersFunctionassignValue
deps/seqan-library-2.0.0/include/seqan/basic/tuple_base.h:347
↓ 15 callersFunctionassignValueI2
deps/seqan-library-2.0.0/include/seqan/basic/triple_base.h:353
↓ 15 callersFunctionatEnd
deps/seqan-library-2.0.0/include/seqan/align/gaps_iterator_array.h:466
↓ 15 callersFunctionback
deps/seqan-library-2.0.0/include/seqan/seeds/seeds_seed_chained.h:470
↓ 15 callersFunctioncheck_one
deps/boost/libs/algorithm/test/search_test1.cpp:227
↓ 15 callersFunctionclear
deps/seqan-library-2.0.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:294
↓ 15 callersFunctioncompare
deps/boost/libs/locale/test/test_winapi_collate.cpp:73
↓ 15 callersFunctioncompare
deps/boost/libs/locale/test/test_collate.cpp:72
↓ 15 callersFunctionconvert
deps/boost/boost/filesystem/path.hpp:976
↓ 15 callersFunctioncreate_symlink
deps/boost/libs/filesystem/src/operations.cpp:1168
↓ 15 callersMethoddata
deps/boost/boost/move/algo/detail/adaptive_sort_merge.hpp:366
↓ 15 callersMethodend
deps/boost/boost/array.hpp:80
↓ 15 callersFunctionendPosition
deps/seqan-library-2.0.0/include/seqan/find/find_base.h:489
↓ 15 callersMethodequivalent
deps/boost/libs/system/test/std_interop_test.cpp:168
↓ 15 callersMethoderase
deps/boost/boost/interprocess/detail/windows_intermodule_singleton.hpp:207
↓ 15 callersMethodget
deps/boost/boost/container/detail/destroyers.hpp:265
↓ 15 callersFunctiongoNext
deps/seqan-library-2.0.0/include/seqan/basic/iterator_adaptor.h:578
↓ 15 callersFunctionif
deps/boost/boost/system/error_code.hpp:684
↓ 15 callersFunctionisInputFileArgument
deps/seqan-library-2.0.0/include/seqan/arg_parse/arg_parse_argument.h:375
↓ 15 callersFunctionisSilent
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_hmm.h:1002
↓ 15 callersFunctionlength
deps/seqan-library-2.0.0/include/seqan/file/string_external.h:1936
↓ 15 callersMethodmark_finished_with_result_internal
deps/boost/boost/thread/future.hpp:554
↓ 15 callersMethodmax_reprobe
deps/jellyfish-2.2.0/include/jellyfish/file_header.hpp:75
↓ 15 callersMethodmax_size
deps/boost/boost/container/string.hpp:353
↓ 15 callersMethodoffset
deps/jellyfish-2.2.0/include/jellyfish/generic_file_header.hpp:165
↓ 15 callersMethodopen
deps/seqan-library-2.0.0/include/seqan/system/system_mutex.h:84
↓ 15 callersFunctionoperator=
deps/boost/boost/move/unique_ptr.hpp:600
↓ 15 callersMethodpop
deps/seqan-library-2.0.0/include/seqan/pipe/pool_base.h:861
↓ 15 callersMethodpptr
deps/seqan-library-2.0.0/include/seqan/stream/file_stream.h:947
↓ 15 callersMethodread
deps/jellyfish-2.2.0/include/jellyfish/mer_dna.hpp:202
↓ 15 callersFunctionregex_finder
deps/boost/boost/algorithm/string/regex_find_format.hpp:45
↓ 15 callersFunctionscore
deps/seqan-library-2.0.0/include/seqan/align_profile/score_profile_seq.h:401
↓ 15 callersMethodselect
deps/boost/libs/locale/src/shared/localization_backend.cpp:198
↓ 15 callersFunctionsetGapExtension
deps/seqan-library-2.0.0/include/seqan/align/dp_cell.h:230
↓ 15 callersMethodset_value_at_thread_exit
deps/boost/boost/thread/future.hpp:784
↓ 15 callersMethodsetp
deps/seqan-library-2.0.0/include/seqan/stream/file_stream.h:955
↓ 15 callersMethodstore
deps/boost/boost/chrono/stopwatches/collectors/last_lap.hpp:22
↓ 15 callersFunctionsystem_error_code
deps/boost/boost/interprocess/errors.hpp:57
↓ 15 callersFunctiontest_integral_limits
deps/boost/libs/config/test/limits_test.cpp:76
↓ 15 callersFunctionto_upper
deps/boost/boost/locale/conversion.hpp:209
↓ 15 callersFunctiontry_lock
deps/boost/boost/thread/lock_types.hpp:349
↓ 15 callersMethodupper_bound
upper_bound
deps/boost/boost/intrusive/bstree.hpp:345
↓ 15 callersFunctionvalue
deps/seqan-library-2.0.0/include/seqan/file/string_external.h:2047
↓ 15 callersMethodwait
deps/boost/boost/thread/future.hpp:1414
↓ 15 callersFunctionweight
deps/seqan-library-2.0.0/include/seqan/modifier/cyclic_shape.h:411
↓ 15 callersFunctionwrite
deps/seqan-library-2.0.0/include/seqan/bam_io/bam_file.h:275
↓ 15 callersFunctionwrite
deps/seqan-library-2.0.0/include/seqan/consensus/consensus_base.h:1133
↓ 14 callersFunctionMessage
Copy constructor.
tests/gtest/gtest.h:3168
↓ 14 callersFunction_atTop
deps/seqan-library-2.0.0/include/seqan/index/index_qgram_bucketrefinement.h:426
↓ 14 callersFunction_clearSpace
deps/seqan-library-2.0.0/include/seqan/sequence/string_base.h:862
↓ 14 callersFunction_printMask
deps/seqan-library-2.0.0/include/seqan/find/find_abndm.h:46
↓ 14 callersFunctionappend
deps/seqan-library-2.0.0/include/seqan/sequence/string_base.h:1261
↓ 14 callersFunctionassign
deps/seqan-library-2.0.0/include/seqan/basic/alphabet_simple_type.h:445
↓ 14 callersFunctionbase_type
deps/boost/boost/fusion/container/vector/detail/cpp03/vector_n.hpp:228
↓ 14 callersFunctioncancel
deps/seqan-library-2.0.0/include/seqan/file/file_base.h:618
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