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github.com/EarlhamInst/KAT
/ functions
Functions
22,481 in github.com/EarlhamInst/KAT
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Functions
22,481
◇
Types & classes
25,829
↓ 16 callers
Function
FilePath
deps/jellyfish-2.2.0/unit_tests/gtest/gtest.h:3549
↓ 16 callers
Function
SEQAN_ASSERT_MSG
deps/seqan-library-2.0.0/include/seqan/basic/debug_test_system.h:2579
↓ 16 callers
Function
_recordSegment
deps/seqan-library-2.0.0/include/seqan/align/dp_trace_segment.h:319
↓ 16 callers
Function
_repeatMaskValue
deps/seqan-library-2.0.0/include/seqan/index/repeat_base.h:129
↓ 16 callers
Method
allocation_command
deps/boost/boost/container/string.hpp:280
↓ 16 callers
Method
assign
deps/boost/boost/regex/v4/basic_regex.hpp:453
↓ 16 callers
Function
assignValueI1
deps/seqan-library-2.0.0/include/seqan/basic/triple_base.h:337
↓ 16 callers
Function
atEnd
deps/seqan-library-2.0.0/include/seqan/stream/adapt_ios.h:318
↓ 16 callers
Function
bF
(b0,b1)
deps/boost/libs/locale/doc/html/jquery.js:16
↓ 16 callers
Method
base
deps/boost/boost/intrusive/detail/reverse_iterator.hpp:71
↓ 16 callers
Method
clone
deps/boost/libs/locale/src/shared/mo_lambda.cpp:61
↓ 16 callers
Method
counter_len
Length of counter field in binary/sorted format
deps/jellyfish-2.2.0/include/jellyfish/file_header.hpp:104
↓ 16 callers
Function
diagnostic_information
deps/boost/boost/exception/detail/exception_ptr.hpp:474
↓ 16 callers
Function
do_regex_match
deps/boost/boost/regex/icu.hpp:427
↓ 16 callers
Method
end
deps/boost/boost/unordered/unordered_map.hpp:1333
↓ 16 callers
Function
free_raw_heap_memory
deps/boost/boost/thread/win32/thread_heap_alloc.hpp:33
↓ 16 callers
Function
getAnnotation
deps/seqan-library-2.0.0/include/seqan/store/store_annotation.h:345
↓ 16 callers
Method
get_bits
Get bits [start, start+len). start must be < 2k, len <= sizeof(base_type) and start+len < 2k. No checks performed. start and len are in bits, not base
deps/jellyfish-2.2.0/include/jellyfish/mer_dna.hpp:475
↓ 16 callers
Method
get_future
result retrieval
deps/boost/boost/thread/future.hpp:3729
↓ 16 callers
Method
get_istream
@brief returns the compressed input istream
deps/seqan-library-2.0.0/include/seqan/stream/zipstream/zipstream.h:204
↓ 16 callers
Method
get_rep
deps/boost/boost/date_time/time_system_counted.hpp:110
↓ 16 callers
Method
getoffset
deps/boost/boost/regex/v4/basic_regex_creator.hpp:192
↓ 16 callers
Function
insertGap
deps/seqan-library-2.0.0/include/seqan/align/gaps_base.h:446
↓ 16 callers
Function
iota
deps/boost/boost/algorithm/cxx11/iota.hpp:28
↓ 16 callers
Method
is_open
deps/boost/libs/locale/src/icu/time_zone.cpp:84
↓ 16 callers
Method
is_special
check to see if time is a special value
deps/boost/boost/date_time/time.hpp:121
↓ 16 callers
Function
last_finder
deps/boost/boost/algorithm/string/finder.hpp:91
↓ 16 callers
Function
length
deps/seqan-library-2.0.0/include/seqan/align/gaps_array.h:335
↓ 16 callers
Method
max
deps/jellyfish-2.2.0/include/jellyfish/dumper.hpp:89
↓ 16 callers
Function
normalize
deps/boost/boost/locale/conversion.hpp:159
↓ 16 callers
Function
parentEdgeLength
deps/seqan-library-2.0.0/include/seqan/index/index_wotd.h:526
↓ 16 callers
Function
parse_command_line
deps/boost/boost/program_options/detail/parsers.hpp:118
↓ 16 callers
Method
position
deps/boost/boost/regex/v4/match_results.hpp:151
↓ 16 callers
Method
reset
deps/boost/boost/thread/tss.hpp:100
↓ 16 callers
Function
shared_count
deps/boost/boost/smart_ptr/detail/shared_count.hpp:135
↓ 16 callers
Method
size
Returns number of arguments in the store; mostly used for testing
deps/boost/boost/test/utils/runtime/argument.hpp:79
↓ 16 callers
Method
splice
<b>Requires</b>: it is an iterator to an element in *this. <b>Effects</b>: Transfers all the elements of list x to this list, before the the element
deps/boost/boost/intrusive/slist.hpp:1375
↓ 16 callers
Function
time_zone
deps/boost/boost/locale/formatting.hpp:634
↓ 16 callers
Method
val_len
Read a Jellyfish database sequentially
deps/jellyfish-2.2.0/swig/python/jellyfish.py:282
↓ 16 callers
Function
weight
deps/seqan-library-2.0.0/include/seqan/index/shape_gapped.h:418
↓ 16 callers
Function
windows_name
deps/boost/libs/filesystem/src/portability.cpp:75
↓ 15 callers
Function
_copyGraph
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_hmm.h:145
↓ 15 callers
Method
add
deps/boost/boost/thread/future.hpp:1151
↓ 15 callers
Method
align
deps/seqan-library-2.0.0/include/seqan/bam_io/cigar.h:444
↓ 15 callers
Function
allocate_raw_heap_memory
deps/boost/boost/thread/win32/thread_heap_alloc.hpp:23
↓ 15 callers
Function
assignValue
deps/seqan-library-2.0.0/include/seqan/basic/tuple_base.h:347
↓ 15 callers
Function
assignValueI2
deps/seqan-library-2.0.0/include/seqan/basic/triple_base.h:353
↓ 15 callers
Function
atEnd
deps/seqan-library-2.0.0/include/seqan/align/gaps_iterator_array.h:466
↓ 15 callers
Function
back
deps/seqan-library-2.0.0/include/seqan/seeds/seeds_seed_chained.h:470
↓ 15 callers
Function
check_one
deps/boost/libs/algorithm/test/search_test1.cpp:227
↓ 15 callers
Function
clear
deps/seqan-library-2.0.0/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:294
↓ 15 callers
Function
compare
deps/boost/libs/locale/test/test_winapi_collate.cpp:73
↓ 15 callers
Function
compare
deps/boost/libs/locale/test/test_collate.cpp:72
↓ 15 callers
Function
convert
deps/boost/boost/filesystem/path.hpp:976
↓ 15 callers
Function
create_symlink
deps/boost/libs/filesystem/src/operations.cpp:1168
↓ 15 callers
Method
data
deps/boost/boost/move/algo/detail/adaptive_sort_merge.hpp:366
↓ 15 callers
Method
end
deps/boost/boost/array.hpp:80
↓ 15 callers
Function
endPosition
deps/seqan-library-2.0.0/include/seqan/find/find_base.h:489
↓ 15 callers
Method
equivalent
deps/boost/libs/system/test/std_interop_test.cpp:168
↓ 15 callers
Method
erase
deps/boost/boost/interprocess/detail/windows_intermodule_singleton.hpp:207
↓ 15 callers
Method
get
deps/boost/boost/container/detail/destroyers.hpp:265
↓ 15 callers
Function
goNext
deps/seqan-library-2.0.0/include/seqan/basic/iterator_adaptor.h:578
↓ 15 callers
Function
if
deps/boost/boost/system/error_code.hpp:684
↓ 15 callers
Function
isInputFileArgument
deps/seqan-library-2.0.0/include/seqan/arg_parse/arg_parse_argument.h:375
↓ 15 callers
Function
isSilent
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_hmm.h:1002
↓ 15 callers
Function
length
deps/seqan-library-2.0.0/include/seqan/file/string_external.h:1936
↓ 15 callers
Method
mark_finished_with_result_internal
deps/boost/boost/thread/future.hpp:554
↓ 15 callers
Method
max_reprobe
deps/jellyfish-2.2.0/include/jellyfish/file_header.hpp:75
↓ 15 callers
Method
max_size
deps/boost/boost/container/string.hpp:353
↓ 15 callers
Method
offset
deps/jellyfish-2.2.0/include/jellyfish/generic_file_header.hpp:165
↓ 15 callers
Method
open
deps/seqan-library-2.0.0/include/seqan/system/system_mutex.h:84
↓ 15 callers
Function
operator=
deps/boost/boost/move/unique_ptr.hpp:600
↓ 15 callers
Method
pop
deps/seqan-library-2.0.0/include/seqan/pipe/pool_base.h:861
↓ 15 callers
Method
pptr
deps/seqan-library-2.0.0/include/seqan/stream/file_stream.h:947
↓ 15 callers
Method
read
deps/jellyfish-2.2.0/include/jellyfish/mer_dna.hpp:202
↓ 15 callers
Function
regex_finder
deps/boost/boost/algorithm/string/regex_find_format.hpp:45
↓ 15 callers
Function
score
deps/seqan-library-2.0.0/include/seqan/align_profile/score_profile_seq.h:401
↓ 15 callers
Method
select
deps/boost/libs/locale/src/shared/localization_backend.cpp:198
↓ 15 callers
Function
setGapExtension
deps/seqan-library-2.0.0/include/seqan/align/dp_cell.h:230
↓ 15 callers
Method
set_value_at_thread_exit
deps/boost/boost/thread/future.hpp:784
↓ 15 callers
Method
setp
deps/seqan-library-2.0.0/include/seqan/stream/file_stream.h:955
↓ 15 callers
Method
store
deps/boost/boost/chrono/stopwatches/collectors/last_lap.hpp:22
↓ 15 callers
Function
system_error_code
deps/boost/boost/interprocess/errors.hpp:57
↓ 15 callers
Function
test_integral_limits
deps/boost/libs/config/test/limits_test.cpp:76
↓ 15 callers
Function
to_upper
deps/boost/boost/locale/conversion.hpp:209
↓ 15 callers
Function
try_lock
deps/boost/boost/thread/lock_types.hpp:349
↓ 15 callers
Method
upper_bound
upper_bound
deps/boost/boost/intrusive/bstree.hpp:345
↓ 15 callers
Function
value
deps/seqan-library-2.0.0/include/seqan/file/string_external.h:2047
↓ 15 callers
Method
wait
deps/boost/boost/thread/future.hpp:1414
↓ 15 callers
Function
weight
deps/seqan-library-2.0.0/include/seqan/modifier/cyclic_shape.h:411
↓ 15 callers
Function
write
deps/seqan-library-2.0.0/include/seqan/bam_io/bam_file.h:275
↓ 15 callers
Function
write
deps/seqan-library-2.0.0/include/seqan/consensus/consensus_base.h:1133
↓ 14 callers
Function
Message
Copy constructor.
tests/gtest/gtest.h:3168
↓ 14 callers
Function
_atTop
deps/seqan-library-2.0.0/include/seqan/index/index_qgram_bucketrefinement.h:426
↓ 14 callers
Function
_clearSpace
deps/seqan-library-2.0.0/include/seqan/sequence/string_base.h:862
↓ 14 callers
Function
_printMask
deps/seqan-library-2.0.0/include/seqan/find/find_abndm.h:46
↓ 14 callers
Function
append
deps/seqan-library-2.0.0/include/seqan/sequence/string_base.h:1261
↓ 14 callers
Function
assign
deps/seqan-library-2.0.0/include/seqan/basic/alphabet_simple_type.h:445
↓ 14 callers
Function
base_type
deps/boost/boost/fusion/container/vector/detail/cpp03/vector_n.hpp:228
↓ 14 callers
Function
cancel
deps/seqan-library-2.0.0/include/seqan/file/file_base.h:618
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