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Functions22,481 in github.com/EarlhamInst/KAT

↓ 19 callersFunctionclear
deps/seqan-library-2.0.0/include/seqan/bed_io/bed_record.h:425
↓ 19 callersMethodclose
deps/jellyfish-2.2.0/include/jellyfish/gzstream.hpp:99
↓ 19 callersFunctiondump
deps/jellyfish-2.2.0/sub_commands/dump_main.cc:36
↓ 19 callersFunctionend
deps/seqan-library-2.0.0/include/seqan/find/find_base.h:519
↓ 19 callersMethodend
deps/jellyfish-2.2.0/lib/jsoncpp.cpp:3053
↓ 19 callersFunctionendPosition
deps/seqan-library-2.0.0/include/seqan/sequence/segment_infix.h:288
↓ 19 callersFunctionfail
If in testing mode then raise an AssertionFailedException.
deps/seqan-library-2.0.0/include/seqan/basic/debug_test_system.h:1703
↓ 19 callersFunctiongetCargo
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_edgestump.h:408
↓ 19 callersFunctionget_system_time
deps/boost/boost/thread/thread_time.hpp:19
↓ 19 callersFunctionglobalAlignment
deps/seqan-library-2.0.0/include/seqan/align/global_alignment_banded.h:80
↓ 19 callersMethodincrement
deps/boost/boost/intrusive/detail/size_holder.hpp:45
↓ 19 callersFunctionisLeaf
deps/seqan-library-2.0.0/include/seqan/index/index_esa_stree.h:2841
↓ 19 callersMethodjoin
deps/boost/boost/thread/detail/thread.hpp:771
↓ 19 callersMethodmark
Get the value of marks::period_mark it was created with.
deps/boost/boost/locale/date_time_facet.hpp:82
↓ 19 callersMethodmean
(self, mean=None)
scripts/kat/peak.py:49
↓ 19 callersFunctionone_of
deps/boost/boost/algorithm/cxx11/one_of.hpp:31
↓ 19 callersFunctionone_of_equal
deps/boost/boost/algorithm/cxx11/one_of.hpp:60
↓ 19 callersMethodpeek
deps/jellyfish-2.2.0/include/jellyfish/mer_overlap_sequence_parser.hpp:291
↓ 19 callersFunctionposition
deps/seqan-library-2.0.0/include/seqan/consensus/consensus_score.h:167
↓ 19 callersMethodrelease
no throw
deps/boost/boost/unordered/detail/implementation.hpp:1874
↓ 19 callersMethodrelease
deps/boost/boost/thread/lock_types.hpp:1198
↓ 19 callersFunctionscore
deps/seqan-library-2.0.0/include/seqan/seeds/seeds_seed_base.h:545
↓ 19 callersFunctionsetPosition
deps/seqan-library-2.0.0/include/seqan/find/find_base.h:812
↓ 19 callersMethodset_bits
deps/jellyfish-2.2.0/include/jellyfish/mer_dna.hpp:490
↓ 19 callersFunctionstart_thread
deps/boost/boost/thread/detail/thread.hpp:184
↓ 19 callersFunctiontoSourcePosition
deps/seqan-library-2.0.0/include/seqan/align/gaps_array.h:428
↓ 19 callersFunctionvalueConstruct
deps/seqan-library-2.0.0/include/seqan/sequence/string_packed.h:1441
↓ 19 callersMethodwhat
deps/boost/libs/program_options/src/value_semantic.cpp:261
↓ 18 callersFunctionSEQAN_ASSERT_LEQ_MSG
deps/seqan-library-2.0.0/include/seqan/basic/debug_test_system.h:2511
↓ 18 callersFunctionaddressof
deps/boost/boost/container/detail/addressof.hpp:28
↓ 18 callersFunctionappend_test_aux
deps/boost/libs/filesystem/test/path_test.cpp:1527
↓ 18 callersFunctionbegin
deps/seqan-library-2.0.0/include/seqan/sequence_journaled/journal_entries_sorted_array.h:191
↓ 18 callersMethodc
deps/jellyfish-2.2.0/include/jellyfish/rectangular_binary_matrix.hpp:96
↓ 18 callersFunctionclear
deps/seqan-library-2.0.0/include/seqan/basic/holder_tristate.h:545
↓ 18 callersFunctionclearGaps
deps/seqan-library-2.0.0/include/seqan/align/gaps_array.h:685
↓ 18 callersMethoddisplay_flags
deps/boost/libs/locale/src/shared/formatting.cpp:92
↓ 18 callersMethodegptr
deps/seqan-library-2.0.0/include/seqan/stream/file_stream.h:944
↓ 18 callersMethodempty
deps/boost/boost/test/utils/basic_cstring/basic_cstring.hpp:270
↓ 18 callersMethodempty
deps/boost/boost/regex/v4/basic_regex.hpp:523
↓ 18 callersMethodeof
Eof check ! Check the eof condition. Eof condition means that there is nothing more to be searched i.e. find_iterator
deps/boost/boost/algorithm/string/find_iterator.hpp:160
↓ 18 callersFunctionfunc
deps/boost/libs/filesystem/example/tchar.cpp:19
↓ 18 callersFunctionget_current_thread_data
deps/boost/libs/thread/src/win32/thread.cpp:123
↓ 18 callersFunctioniequals
deps/boost/boost/algorithm/string/predicate.hpp:341
↓ 18 callersMethodimbue
deps/boost/boost/regex/v4/basic_regex.hpp:666
↓ 18 callersFunctioninfix
deps/seqan-library-2.0.0/include/seqan/index/index_base.h:1051
↓ 18 callersMethodis_short
deps/boost/boost/container/string.hpp:239
↓ 18 callersFunctionlength
deps/seqan-library-2.0.0/include/seqan/sequence/string_packed.h:537
↓ 18 callersFunctionlength
deps/seqan-library-2.0.0/include/seqan/index/index_esa_algs.h:692
↓ 18 callersMethodmark_exceptional_finish_internal
deps/boost/boost/thread/future.hpp:412
↓ 18 callersFunctionmove
deps/seqan-library-2.0.0/include/seqan/basic/tuple_base.h:333
↓ 18 callersMethodname
deps/boost/boost/core/typeinfo.hpp:61
↓ 18 callersFunctionnone_of_equal
deps/boost/boost/algorithm/cxx11/none_of.hpp:59
↓ 18 callersFunctionposition
deps/seqan-library-2.0.0/include/seqan/sequence_journaled/sequence_journaled_iterator.h:726
↓ 18 callersMethodpush
deps/seqan-library-2.0.0/include/seqan/pipe/pool_base.h:877
↓ 18 callersMethodresize
<b>Effects</b>: Inserts or erases elements at the end such that the size becomes n. New elements are copy constructed from x. <b>Throws</b>: If memor
deps/boost/boost/container/string.hpp:1088
↓ 18 callersMethodsize
size:
deps/boost/boost/regex/v4/match_results.hpp:113
↓ 18 callersFunctiontest_cmdline
deps/boost/libs/program_options/test/cmdline_test.cpp:99
↓ 18 callersFunctionthrows
Misuse of the error_code object is turned into a noisy failure by poisoning the reference. This particular implementation doesn't produce warnings or
deps/boost/boost/system/error_code.hpp:555
↓ 18 callersFunctiontimes
deps/boost/boost/config/platform/vxworks.hpp:318
↓ 18 callersFunctionto_lower
deps/boost/boost/locale/conversion.hpp:248
↓ 18 callersFunctionto_timespec
deps/boost/boost/thread/pthread/timespec.hpp:37
↓ 18 callersFunctionvalue
deps/seqan-library-2.0.0/include/seqan/consensus/consensus_score.h:185
↓ 18 callersMethodwait
deps/boost/boost/thread/futures/wait_for_any.hpp:121
↓ 17 callersFunction_computeTrack
deps/seqan-library-2.0.0/include/seqan/align/dp_algorithm_impl.h:296
↓ 17 callersFunction_computeWordProbGivenPrefix
deps/seqan-library-2.0.0/include/seqan/alignment_free/af_d2z.h:602
↓ 17 callersFunction_indent
deps/seqan-library-2.0.0/include/seqan/arg_parse/arg_parse_ctd_support.h:248
↓ 17 callersFunctionaddEdge
deps/seqan-library-2.0.0/include/seqan/graph_align/graph_impl_align.h:597
↓ 17 callersFunctionassignNextT
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_edgestump.h:773
↓ 17 callersFunctionbegin
deps/seqan-library-2.0.0/include/seqan/index/index_esa_stree.h:1557
↓ 17 callersFunctionbeginPosition
deps/seqan-library-2.0.0/include/seqan/find/find_base.h:429
↓ 17 callersMethodcbefore_begin
<b>Effects</b>: Returns an iterator that points to a position before the first element. Equivalent to "end()" <b>Throws</b>: Nothing. <b>Complexity<
deps/boost/boost/intrusive/slist.hpp:621
↓ 17 callersMethodclear
deps/boost/boost/timer/timer.hpp:44
↓ 17 callersFunctioncopy_file
deps/boost/libs/filesystem/example/mbcopy.cpp:33
↓ 17 callersMethoddeallocate
deps/boost/boost/container/string.hpp:301
↓ 17 callersFunctiondifference
deps/seqan-library-2.0.0/include/seqan/pipe/pipe_iterator.h:249
↓ 17 callersFunctiondo_regex_search
deps/boost/boost/regex/icu.hpp:600
↓ 17 callersMethodeof
deps/seqan-library-2.0.0/include/seqan/pipe/pool_base.h:882
↓ 17 callersFunctionerase
deps/seqan-library-2.0.0/include/seqan/sequence/string_set_owner.h:225
↓ 17 callersFunctionextract
<b>Effects</b>: Removes the first element in the container with key equivalent to k. <b>Returns</b>: A node_type owning the element if found, otherwi
deps/boost/boost/container/map.hpp:981
↓ 17 callersMethodfind
deps/boost/boost/test/utils/basic_cstring/basic_cstring.hpp:509
↓ 17 callersFunctionfreePage
deps/seqan-library-2.0.0/include/seqan/file/file_page.h:213
↓ 17 callersMethodgeneric_string
deps/boost/libs/filesystem/src/path.cpp:176
↓ 17 callersMethodhash
Calculate a hash of a text in range [b,e). The value can be used for collation sensitive string comparison. If compare(level,b1,e1,b2,e2) == 0 then h
deps/boost/boost/locale/collator.hpp:106
↓ 17 callersMethodheight
lib/include/kat/sparse_matrix.hpp:158
↓ 17 callersMethodinsert_unique_check
deps/boost/boost/intrusive/bstree_algorithms.hpp:997
↓ 17 callersFunctionisEqual
deps/seqan-library-2.0.0/include/seqan/basic/fundamental_tags.h:524
↓ 17 callersFunctionmake_iterator_range
deps/boost/boost/range/iterator_range_core.hpp:758
↓ 17 callersMethodmap
deps/boost/libs/locale/src/icu/boundary.cpp:191
↓ 17 callersMethodmark_exceptional_finish
deps/boost/boost/thread/future.hpp:418
↓ 17 callersMethodopen
deps/boost/libs/regex/src/fileiter.cpp:88
↓ 17 callersMethodowns_lock
deps/boost/boost/thread/lock_types.hpp:1190
↓ 17 callersFunctionrepresentative
deps/seqan-library-2.0.0/include/seqan/index/index_qgram_bucketrefinement.h:568
↓ 17 callersMethodswap
deps/boost/libs/locale/src/shared/date_time.cpp:409
↓ 17 callersFunctiontick_factor
deps/boost/boost/chrono/detail/inlined/posix/process_cpu_clocks.hpp:25
↓ 17 callersMethodtransform
deps/boost/libs/regex/src/c_regex_traits.cpp:49
↓ 17 callersFunctionvalue
deps/seqan-library-2.0.0/include/seqan/journaled_set/journaled_set_impl.h:117
↓ 17 callersFunctionwaitFor
deps/seqan-library-2.0.0/include/seqan/parallel/parallel_lock.h:80
↓ 16 callersFunctionAssertionFailure
Makes a failed assertion result.
tests/gtest/src/gtest-all.cc:2457
↓ 16 callersFunctionAssertionFailure
Makes a failed assertion result.
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:2457
↓ 16 callersFunctionFilePath
tests/gtest/gtest.h:3549
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