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Functions22,481 in github.com/EarlhamInst/KAT

⨍ Functions 22,481◇ Types & classes 25,829
↓ 22 callersFunction_toPointer
deps/seqan-library-2.0.0/include/seqan/sequence/segment_base.h:441
↓ 22 callersFunctionappendName
deps/seqan-library-2.0.0/include/seqan/misc/name_store_cache.h:284
↓ 22 callersFunctionarrayDestruct
deps/seqan-library-2.0.0/include/seqan/sequence/string_packed.h:1139
↓ 22 callersFunctionassignValue
deps/seqan-library-2.0.0/include/seqan/sequence/string_packed.h:1397
↓ 22 callersMethodbegin
deps/boost/boost/date_time/period.hpp:110
↓ 22 callersFunctionbeginWrite
deps/seqan-library-2.0.0/include/seqan/pipe/pool_base.h:1240
↓ 22 callersMethodcompare
deps/boost/boost/bind/bind.hpp:1433
↓ 22 callersFunctioncompare_text
deps/boost/boost/locale/boundary/segment.hpp:27
↓ 22 callersFunctioncountSequences
deps/seqan-library-2.0.0/include/seqan/index/index_base.h:938
↓ 22 callersFunctionempty
deps/seqan-library-2.0.0/include/seqan/basic/holder_simple.h:163
↓ 22 callersFunctionend
deps/seqan-library-2.0.0/include/seqan/sequence/string_array.h:209
↓ 22 callersMethodfind
deps/boost/boost/regex/v4/perl_matcher_common.hpp:238
↓ 22 callersFunctionfind_format
deps/boost/boost/algorithm/string/find_format.hpp:129
↓ 22 callersFunctionhost
deps/seqan-library-2.0.0/include/seqan/sequence/segment_prefix.h:153
↓ 22 callersFunctionimpl
Accessors for the implementation object.
tests/gtest/gtest.h:18668
↓ 22 callersFunctionimpl
Accessors for the implementation object.
deps/jellyfish-2.2.0/unit_tests/gtest/gtest.h:18668
↓ 22 callersFunctioninterlocked_compare_exchange
deps/boost/boost/interprocess/detail/win32_api.hpp:1472
↓ 22 callersMethodmark_finished_with_result
deps/boost/boost/thread/future.hpp:745
↓ 22 callersFunctionmismatch
C++14 provide a mismatch algorithm with four iterator arguments(), but earlier standard libraries didn't, so provide this needed functionality.
deps/boost/libs/filesystem/src/path.cpp:385
↓ 22 callersFunctionpthread_mutex_destroy
deps/boost/boost/thread/pthread/mutex.hpp:48
↓ 22 callersFunctionrefresh
deps/seqan-library-2.0.0/include/seqan/misc/name_store_cache.h:258
↓ 22 callersFunctionrelease
deps/boost/boost/thread/win32/thread_primitives.hpp:355
↓ 22 callersMethodresult
deps/boost/boost/accumulators/statistics/sum.hpp:49
↓ 22 callersMethodshared_from_this
deps/boost/boost/smart_ptr/enable_shared_from_this.hpp:48
↓ 22 callersFunctionsortAlignedReads
deps/seqan-library-2.0.0/include/seqan/store/store_align.h:485
↓ 21 callersFunction_pageFrameStatusString
deps/seqan-library-2.0.0/include/seqan/file/file_page.h:536
↓ 21 callersFunctiona_load
deps/jellyfish-2.2.0/include/jellyfish/atomic_field.hpp:27
↓ 21 callersFunctionatEnd
deps/seqan-library-2.0.0/include/seqan/sequence/string_block.h:280
↓ 21 callersFunctionatEnd
deps/seqan-library-2.0.0/include/seqan/find/find_base.h:723
↓ 21 callersFunctionbegin
deps/seqan-library-2.0.0/include/seqan/sequence_journaled/sequence_journaled_iterator.h:294
↓ 21 callersFunctionfile_size
deps/boost/boost/filesystem/operations.hpp:613
↓ 21 callersMethodfilename_is_dot
deps/boost/boost/filesystem/path.hpp:860
↓ 21 callersFunctionfill
@cond
deps/boost/boost/stacktrace/stacktrace.hpp:51
↓ 21 callersFunctionfill
deps/seqan-library-2.0.0/include/seqan/basic/basic_simd_vector.h:249
↓ 21 callersMethodfill
deps/boost/boost/format/detail/workarounds_gcc-2_95.hpp:73
↓ 21 callersMethodget
deps/boost/boost/fusion/container/map/detail/map_impl.hpp:142
↓ 21 callersFunctionhash_range
deps/boost/boost/functional/hash/hash.hpp:345
↓ 21 callersFunctioninsertGaps
deps/seqan-library-2.0.0/include/seqan/align/gaps_array.h:524
↓ 21 callersFunctionis_separator
deps/boost/boost/regex/v4/regex_traits_defaults.hpp:121
↓ 21 callersFunctioniter_eq
deps/boost/libs/algorithm/test/mismatch_test.cpp:27
↓ 21 callersFunctionkeyOf
deps/seqan-library-2.0.0/include/seqan/misc/set.h:342
↓ 21 callersFunctionmake_thread_info
deps/boost/boost/thread/detail/thread.hpp:217
↓ 21 callersMethodnarrow
deps/boost/boost/format/detail/workarounds_gcc-2_95.hpp:76
↓ 21 callersFunctionordEqual
deps/seqan-library-2.0.0/include/seqan/basic/fundamental_comparison.h:136
↓ 21 callersMethodpriv_value_traits_ptr
deps/boost/boost/intrusive/slist.hpp:261
↓ 21 callersFunctionrandom
Gets the random number generator.
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:1202
↓ 21 callersFunctionstable_sort
deps/boost/boost/move/algo/detail/adaptive_sort_merge.hpp:879
↓ 21 callersFunctionsuffix
deps/seqan-library-2.0.0/include/seqan/sequence/string_set_base.h:637
↓ 21 callersFunctionsuffixLength
deps/seqan-library-2.0.0/include/seqan/sequence/string_set_base.h:1020
↓ 21 callersFunctiontest_gmtime
deps/boost/libs/chrono/test/io/time_point_output.cpp:216
↓ 21 callersFunctiontest_iterator_types
deps/boost/libs/algorithm/test/gather_test1.cpp:56
↓ 21 callersFunctiontest_reduce
deps/boost/libs/algorithm/test/reduce_test.cpp:24
↓ 21 callersFunctionuncast
deps/boost/boost/intrusive/detail/uncast.hpp:43
↓ 20 callersFunction_alignTracePrint
deps/seqan-library-2.0.0/include/seqan/graph_align/graph_impl_align.h:2096
↓ 20 callersFunction_copyCargo
deps/seqan-library-2.0.0/include/seqan/modifier/modifier_string.h:475
↓ 20 callersFunction_goNextCell
deps/seqan-library-2.0.0/include/seqan/align/dp_matrix_navigator_trace_matrix.h:162
↓ 20 callersFunctionaddVertex
deps/seqan-library-2.0.0/include/seqan/graph_align/graph_impl_align.h:489
↓ 20 callersFunctionany_of
deps/boost/boost/algorithm/cxx11/any_of.hpp:31
↓ 20 callersFunctionany_of_equal
deps/boost/boost/algorithm/cxx11/any_of.hpp:61
↓ 20 callersMethodat
at() with range check
deps/boost/boost/array.hpp:127
↓ 20 callersFunctionatEnd
deps/seqan-library-2.0.0/include/seqan/store/store_annotation.h:627
↓ 20 callersMethodat_impl
deps/boost/boost/fusion/container/vector/detail/cpp03/preprocessed/vector20.hpp:179
↓ 20 callersMethodat_impl
deps/boost/boost/fusion/container/vector/detail/cpp03/preprocessed/vector30.hpp:179
↓ 20 callersMethodat_impl
deps/boost/boost/fusion/container/vector/detail/cpp03/preprocessed/vector40.hpp:179
↓ 20 callersMethodbase
deps/boost/boost/regex/v4/match_results.hpp:519
↓ 20 callersMethodbegin
deps/boost/boost/test/tools/detail/it_pair.hpp:43
↓ 20 callersFunctioncapacity
deps/seqan-library-2.0.0/include/seqan/file/file_page.h:157
↓ 20 callersMethodcheck
deps/jellyfish-2.2.0/include/jellyfish/bloom_common.hpp:83
↓ 20 callersMethodclear
deps/boost/boost/function/function_template.hpp:507
↓ 20 callersFunctionclearClipping
deps/seqan-library-2.0.0/include/seqan/align/gaps_array.h:757
↓ 20 callersMethodconvert
deps/boost/boost/lexical_cast/detail/lcast_unsigned_converters.hpp:93
↓ 20 callersFunctioncount
<b>Returns</b>: The number of elements with key equivalent to x. <b>Complexity</b>: log(size())+count(k)
deps/boost/boost/container/map.hpp:1087
↓ 20 callersFunctiondirectionIterator
deps/seqan-library-2.0.0/include/seqan/stream/iter_stream.h:465
↓ 20 callersMethodend
deps/boost/boost/test/tools/detail/it_pair.hpp:44
↓ 20 callersFunctionget
Returns a reference to the value if this is initialized, otherwise, the behaviour is UNDEFINED No-throw
deps/boost/boost/optional/optional.hpp:1190
↓ 20 callersFunctiongoNext
deps/seqan-library-2.0.0/include/seqan/index/index_esa_algs.h:135
↓ 20 callersFunctioninsert
deps/boost/boost/algorithm/string/detail/sequence.hpp:29
↓ 20 callersMethodisArray
deps/jellyfish-2.2.0/lib/jsoncpp.cpp:2963
↓ 20 callersFunctionisEqual
deps/seqan-library-2.0.0/include/seqan/sequence/sequence_lexical.h:379
↓ 20 callersMethodis_empty
deps/jellyfish-2.2.0/include/jellyfish/mer_heap.hpp:99
↓ 20 callersFunctionis_permutation
deps/boost/boost/algorithm/cxx14/is_permutation.hpp:34
↓ 20 callersFunctionis_sorted_until
deps/boost/boost/algorithm/cxx11/is_sorted.hpp:37
↓ 20 callersFunctionis_space
is_space predicate ! Construct the \c is_classified predicate for the \c ctype_base::space category. \param Loc A locale u
deps/boost/boost/algorithm/string/classification.hpp:56
↓ 20 callersMethodkey
Gets the user supplied key.
deps/jellyfish-2.2.0/unit_tests/gtest/gtest.h:17886
↓ 20 callersMethodleft
(self)
scripts/kat/peak.py:30
↓ 20 callersFunctionlength
deps/seqan-library-2.0.0/include/seqan/align/matrix_base.h:409
↓ 20 callersFunctionparse
deps/seqan-library-2.0.0/include/seqan/seq_io/genomic_region.h:242
↓ 20 callersMethodprevious
<b>Returns</b>: The iterator to the element before i in the list. Returns the end-iterator, if either i is the begin-iterator or the list is empty. <
deps/boost/boost/intrusive/slist.hpp:1822
↓ 20 callersMethodrend
deps/boost/boost/array.hpp:107
↓ 20 callersMethodreset
deps/boost/boost/thread/future.hpp:3710
↓ 20 callersFunctionsearch
deps/boost/boost/container/detail/algorithm.hpp:135
↓ 20 callersMethodsize
Get number if items in list
deps/boost/boost/locale/date_time.hpp:413
↓ 20 callersFunctionsymlink_status
deps/boost/boost/filesystem/operations.hpp:440
↓ 20 callersMethodtimes
deps/jellyfish-2.2.0/include/jellyfish/rectangular_binary_matrix.hpp:138
↓ 20 callersMethodto_value_ptr
deps/boost/boost/intrusive/detail/hook_traits.hpp:127
↓ 20 callersFunctionxmlEscape
deps/seqan-library-2.0.0/include/seqan/arg_parse/xml_support.h:70
↓ 19 callersFunctionAssertionSuccess
Makes a successful assertion result.
tests/gtest/src/gtest-all.cc:2452
↓ 19 callersFunctionAssertionSuccess
Makes a successful assertion result.
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:2452
↓ 19 callersFunction_scoutBestScore
deps/seqan-library-2.0.0/include/seqan/align/dp_scout.h:203
↓ 19 callersMethodcend
deps/boost/boost/intrusive/bstree.hpp:163
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