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Functions22,481 in github.com/EarlhamInst/KAT

⨍ Functions 22,481◇ Types & classes 25,829
↓ 27 callersFunctionempty
deps/seqan-library-2.0.0/include/seqan/index/find_backtracking.h:748
↓ 27 callersFunctionend
deps/seqan-library-2.0.0/include/seqan/seeds/seeds_seed_chained.h:412
↓ 27 callersFunctionfront
deps/seqan-library-2.0.0/include/seqan/sequence/adapt_std_list.h:204
↓ 27 callersMethodget
deps/jellyfish-2.2.0/unit_tests/gtest/gtest.h:2006
↓ 27 callersFunctionhasOption
deps/seqan-library-2.0.0/include/seqan/arg_parse/argument_parser.h:262
↓ 27 callersMethodhash
deps/boost/boost/unordered/detail/implementation.hpp:3429
↓ 27 callersFunctionposGlobalize
deps/seqan-library-2.0.0/include/seqan/sequence/string_set_base.h:523
↓ 27 callersFunctionsetClippedBeginPosition
deps/seqan-library-2.0.0/include/seqan/align/gaps_array.h:778
↓ 27 callersMethodset_last_node
deps/boost/boost/intrusive/slist.hpp:195
↓ 27 callersFunctionsignal
deps/seqan-library-2.0.0/include/seqan/system/system_event.h:350
↓ 27 callersMethodsz_traits
deps/boost/boost/intrusive/bstree.hpp:560
↓ 27 callersFunctiontest_good
deps/boost/libs/chrono/test/io/duration_input.cpp:12
↓ 27 callersFunctionthrow_out_of_range
deps/boost/boost/container/throw_exception.hpp:60
↓ 27 callersFunctionunique
deps/boost/boost/move/algo/unique.hpp:32
↓ 26 callersFunctionSEQAN_ASSERT_FAIL
deps/seqan-library-2.0.0/include/seqan/basic/debug_test_system.h:2443
↓ 26 callersFunctioncapacity
deps/seqan-library-2.0.0/include/seqan/parallel/parallel_queue.h:390
↓ 26 callersFunctioncompare
generic, lexicographical
deps/boost/boost/filesystem/path.hpp:498
↓ 26 callersMethoddenominator
deps/seqan-library-2.0.0/include/seqan/math/math_rational.h:106
↓ 26 callersMethodempty
deps/boost/boost/container/detail/multiallocation_chain.hpp:100
↓ 26 callersFunctionend
deps/seqan-library-2.0.0/include/seqan/basic/iterator_range.h:249
↓ 26 callersMethodexec
deps/jellyfish-2.2.0/lib/thread_exec.cc:19
↓ 26 callersFunctiongetValue
deps/seqan-library-2.0.0/include/seqan/align/align_iterator_base.h:341
↓ 26 callersFunctionignore_unused_variable_warning
deps/boost/boost/concept_check.hpp:52
↓ 26 callersFunctionkey
deps/seqan-library-2.0.0/include/seqan/map/map_vector.h:419
↓ 26 callersMethodkey_node_comp
deps/boost/boost/intrusive/bstree.hpp:370
↓ 26 callersFunctionlength
deps/boost/boost/range/as_literal.hpp:36
↓ 26 callersFunctionoverflow_error_if_not_zero
deps/boost/boost/regex/v4/regex_workaround.hpp:220
↓ 26 callersMethodpermissions
Constructs a permissions object from a user provided os-dependent permissions.
deps/boost/boost/interprocess/permissions.hpp:82
↓ 26 callersFunctionposition
deps/seqan-library-2.0.0/include/seqan/sequence/string_packed_old.h:983
↓ 26 callersFunctionrange
deps/seqan-library-2.0.0/include/seqan/index/index_qgram.h:2571
↓ 26 callersFunctionresize
deps/seqan-library-2.0.0/include/seqan/misc/union_find.h:268
↓ 26 callersFunctionsetClippedEndPosition
deps/seqan-library-2.0.0/include/seqan/align/gaps_array.h:790
↓ 26 callersFunctionsourceVertex
deps/seqan-library-2.0.0/include/seqan/graph_align/graph_impl_align.h:678
↓ 26 callersFunctionsourceVertex
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_hmm.h:471
↓ 26 callersFunctionsp_enable_shared_from_this
deps/boost/boost/smart_ptr/shared_ptr.hpp:217
↓ 26 callersFunctionupperDiagonal
deps/seqan-library-2.0.0/include/seqan/align/dp_band.h:339
↓ 26 callersMethodwiden
gcc takes wchar..
deps/boost/boost/format/detail/workarounds_gcc-2_95.hpp:75
↓ 25 callersFunctionall_of
deps/boost/boost/algorithm/cxx11/all_of.hpp:30
↓ 25 callersFunctioncanonical
deps/boost/libs/filesystem/src/operations.cpp:895
↓ 25 callersMethodend
deps/jellyfish-2.2.0/swig/python/swig_wrap.cpp:1057
↓ 25 callersMethoderase
deps/seqan-library-2.0.0/include/seqan/file/file_page.h:1231
↓ 25 callersFunctionhex
deps/boost/boost/algorithm/hex.hpp:150
↓ 25 callersMethodisctype
deps/boost/boost/regex/v4/cpp_regex_traits.hpp:881
↓ 25 callersFunctionlength
deps/seqan-library-2.0.0/include/seqan/sequence/string_set_base.h:1272
↓ 25 callersFunctionnotify
deps/boost/libs/program_options/src/variables_map.cpp:150
↓ 25 callersMethodresize
deps/boost/libs/regex/src/regex_raw_buffer.cpp:37
↓ 25 callersFunctionsuffix
deps/seqan-library-2.0.0/include/seqan/index/index_pizzachili_string.h:781
↓ 25 callersMethodto_node_ptr
deps/boost/boost/intrusive/detail/hook_traits.hpp:115
↓ 25 callersFunctionvalue
deps/boost/boost/regex/icu.hpp:160
↓ 24 callersFunction_adaptTraceSegmentsTo
deps/seqan-library-2.0.0/include/seqan/align/dp_traceback_adaptor.h:59
↓ 24 callersFunction_bitpos
deps/seqan-library-2.0.0/include/seqan/sequence/string_packed_old.h:971
↓ 24 callersFunction_isSizeInval
deps/seqan-library-2.0.0/include/seqan/index/index_base.h:1271
↓ 24 callersMethodadd_single
deps/boost/boost/regex/v4/basic_regex_creator.hpp:78
↓ 24 callersFunctionallocate
deps/seqan-library-2.0.0/include/seqan/system/file_async.h:640
↓ 24 callersMethodbegin
Operations
deps/boost/boost/algorithm/string/detail/util.hpp:45
↓ 24 callersFunctionclear
deps/seqan-library-2.0.0/include/seqan/parallel/parallel_lock.h:74
↓ 24 callersFunctioncopy_exception
deps/boost/boost/exception/detail/exception_ptr.hpp:74
↓ 24 callersFunctiondirAt
deps/seqan-library-2.0.0/include/seqan/index/index_qgram.h:468
↓ 24 callersFunctiongetPosition
deps/seqan-library-2.0.0/include/seqan/index/index_fm_right_array_binary_tree_iterator.h:329
↓ 24 callersFunctioninitial_path
deps/boost/libs/filesystem/src/operations.cpp:1392
↓ 24 callersFunctionis_palindrome
deps/boost/boost/algorithm/is_palindrome.hpp:38
↓ 24 callersMethodk
deps/jellyfish-2.2.0/include/jellyfish/mer_dna.hpp:677
↓ 24 callersFunctionlazy_init
deps/boost/boost/thread/future.hpp:2238
↓ 24 callersFunctionlength
deps/seqan-library-2.0.0/include/seqan/parallel/parallel_queue.h:357
↓ 24 callersFunctionparentEdgeLabel
deps/seqan-library-2.0.0/include/seqan/index/index_fm_stree.h:520
↓ 24 callersFunctionrun
deps/seqan-library-2.0.0/include/seqan/system/system_thread.h:204
↓ 24 callersMethodset_initialized
deps/boost/boost/smart_ptr/make_shared_object.hpp:105
↓ 24 callersMethodsize
Read a Jellyfish database sequentially
deps/jellyfish-2.2.0/swig/python/jellyfish.py:322
↓ 24 callersMethodsymlink_status
deps/boost/boost/filesystem/operations.hpp:1254
↓ 24 callersFunctionvalue
deps/seqan-library-2.0.0/include/seqan/align/matrix_base.h:602
↓ 23 callersFunctionColoredPrintf
Helpers for printing colored strings to stdout. Note that on Windows, we cannot simply emit special characters and have the terminal change colors. Th
tests/gtest/src/gtest-all.cc:4105
↓ 23 callersFunctionColoredPrintf
Helpers for printing colored strings to stdout. Note that on Windows, we cannot simply emit special characters and have the terminal change colors. Th
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:4105
↓ 23 callersFunctionSEQAN_ASSERT_NEQ
deps/seqan-library-2.0.0/include/seqan/basic/debug_test_system.h:2487
↓ 23 callersMethodallocate
Allocates memory for an array of count elements. Throws std::bad_alloc if there is no enough memory
deps/boost/boost/container/new_allocator.hpp:141
↓ 23 callersFunctioncheck_value
deps/boost/libs/program_options/test/parsers_test.cpp:53
↓ 23 callersFunctionclippedBeginPosition
deps/seqan-library-2.0.0/include/seqan/align/gaps_array.h:804
↓ 23 callersFunctioncreate_directory
deps/boost/libs/filesystem/src/operations.cpp:1092
↓ 23 callersFunctioncreate_emplace_args
deps/boost/boost/unordered/detail/implementation.hpp:636
↓ 23 callersMethodeback
deps/seqan-library-2.0.0/include/seqan/stream/file_stream.h:942
↓ 23 callersFunctionempty
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_hmm.h:227
↓ 23 callersFunctionendWrite
deps/seqan-library-2.0.0/include/seqan/pipe/pool_base.h:1261
↓ 23 callersFunctionequivalent
deps/boost/libs/filesystem/src/operations.cpp:1236
↓ 23 callersFunctionfilesystem_error
deps/boost/boost/filesystem/operations.hpp:86
↓ 23 callersFunctionfindVertex
deps/seqan-library-2.0.0/include/seqan/graph_align/graph_impl_align.h:1295
↓ 23 callersFunctionfind_format_all_copy
deps/boost/boost/algorithm/string/find_format.hpp:177
↓ 23 callersMethodget
tests/gtest/gtest.h:2006
↓ 23 callersFunctionget_pointer
deps/boost/boost/core/ref.hpp:291
↓ 23 callersFunctionlength
deps/seqan-library-2.0.0/include/seqan/modifier/modifier_string.h:593
↓ 23 callersFunctionnone_of
deps/boost/boost/algorithm/cxx11/none_of.hpp:29
↓ 23 callersMethodresize
deps/seqan-library-2.0.0/include/seqan/system/file_sync.h:394
↓ 23 callersMethodright
(self)
scripts/kat/peak.py:33
↓ 23 callersFunctionsameType
deps/seqan-library-2.0.0/include/seqan/basic/concept_checking.h:731
↓ 23 callersFunctionstrcpy_s
deps/boost/boost/regex/v4/regex_workaround.hpp:195
↓ 23 callersFunctionsysTime
inline _proFloat sysTime() { return GetTickCount() * 1e-3; }
deps/seqan-library-2.0.0/include/seqan/basic/profiling.h:246
↓ 23 callersFunctiont
(bB,bv)
deps/boost/libs/locale/doc/html/jquery.js:28
↓ 22 callersFunctionGetUnitTestImpl
Convenience function for accessing the global UnitTest implementation object.
tests/gtest/src/gtest-all.cc:1337
↓ 22 callersFunctionGetUnitTestImpl
Convenience function for accessing the global UnitTest implementation object.
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:1337
↓ 22 callersFunction_conditionalOrOnEquality
deps/seqan-library-2.0.0/include/seqan/align/dp_formula.h:116
↓ 22 callersFunction_getId
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_edgestump.h:1007
↓ 22 callersFunction_setLength
deps/seqan-library-2.0.0/include/seqan/sequence/string_array.h:253
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