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github.com/EarlhamInst/KAT
/ functions
Functions
22,481 in github.com/EarlhamInst/KAT
⨍
Functions
22,481
◇
Types & classes
25,829
↓ 34 callers
Function
throw_exception
deps/boost/libs/exception/test/no_exceptions_test.cpp:33
↓ 33 callers
Function
SWIG_Py_Void
deps/jellyfish-2.2.0/swig/python/swig_wrap.cpp:1426
↓ 33 callers
Function
accept
deps/boost/boost/bind/bind_template.hpp:326
↓ 33 callers
Method
base
deps/jellyfish-2.2.0/include/jellyfish/mer_dna.hpp:269
↓ 33 callers
Function
can_start
deps/boost/boost/regex/v4/perl_matcher.hpp:44
↓ 33 callers
Function
clear
deps/seqan-library-2.0.0/include/seqan/misc/set.h:227
↓ 33 callers
Function
container
deps/seqan-library-2.0.0/include/seqan/basic/iterator_position.h:164
↓ 33 callers
Function
empty
deps/seqan-library-2.0.0/include/seqan/find/find_base.h:668
↓ 33 callers
Function
format
does not stop()
deps/boost/boost/timer/timer.hpp:67
↓ 33 callers
Function
getNextS
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_edgestump.h:946
↓ 33 callers
Function
goRight
deps/seqan-library-2.0.0/include/seqan/index/index_esa_stree.h:2182
↓ 33 callers
Method
matrix
deps/jellyfish-2.2.0/include/jellyfish/file_header.hpp:43
↓ 33 callers
Function
owns_lock
deps/boost/boost/thread/lock_types.hpp:471
↓ 33 callers
Function
path
deps/boost/boost/filesystem/path.hpp:137
↓ 33 callers
Function
posLocalize
deps/seqan-library-2.0.0/include/seqan/sequence/string_set_base.h:574
↓ 33 callers
Function
resize
deps/seqan-library-2.0.0/include/seqan/sequence/string_base.h:1756
↓ 33 callers
Function
saAt
deps/seqan-library-2.0.0/include/seqan/index/index_base.h:1106
↓ 33 callers
Function
sequenceLength
deps/seqan-library-2.0.0/include/seqan/seq_io/fai_index.h:219
↓ 33 callers
Function
year
let the compiler write copy, assignment, and destructor
deps/boost/boost/date_time/date.hpp:78
↓ 32 callers
Function
assign
deps/seqan-library-2.0.0/include/seqan/sequence/string_base.h:957
↓ 32 callers
Method
back
deps/boost/boost/array.hpp:141
↓ 32 callers
Function
directionIterator
deps/seqan-library-2.0.0/include/seqan/misc/svg.h:199
↓ 32 callers
Method
empty
<b>Effects</b>: Returns true if the list contains no elements. <b>Throws</b>: Nothing. <b>Complexity</b>: Constant. <b>Note</b>: Does not affect th
deps/boost/boost/intrusive/slist.hpp:707
↓ 32 callers
Function
eof
deps/seqan-library-2.0.0/include/seqan/index/index_esa_stree.h:2349
↓ 32 callers
Function
getBucket
deps/seqan-library-2.0.0/include/seqan/index/index_qgram.h:974
↓ 32 callers
Method
get_value_traits
deps/boost/boost/intrusive/detail/tree_iterator.hpp:146
↓ 32 callers
Function
is_any_of
deps/boost/boost/algorithm/string/classification.hpp:201
↓ 32 callers
Function
random_bits
Return length random bits. 1 <= length <= 64
deps/jellyfish-2.2.0/unit_tests/test_main.cc:35
↓ 32 callers
Function
thread
deps/boost/boost/thread/detail/thread.hpp:268
↓ 32 callers
Function
toViewPosition
deps/seqan-library-2.0.0/include/seqan/align/gaps_array.h:472
↓ 31 callers
Method
GetString
Gets the text streamed to this object so far as an std::string. Each '\0' character in the buffer is replaced with "\\0".
tests/gtest/src/gtest-all.cc:2430
↓ 31 callers
Method
GetString
Gets the text streamed to this object so far as an std::string. Each '\0' character in the buffer is replaced with "\\0".
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:2430
↓ 31 callers
Function
clear
deps/seqan-library-2.0.0/include/seqan/store/store_io_sam.h:184
↓ 31 callers
Function
day
deps/boost/boost/date_time/date.hpp:88
↓ 31 callers
Method
filter
deps/jellyfish-2.2.0/sub_commands/count_main.cc:93
↓ 31 callers
Function
get
deps/boost/boost/container/detail/variadic_templates_tools.hpp:126
↓ 31 callers
Function
getValue
deps/seqan-library-2.0.0/include/seqan/basic/tuple_base.h:359
↓ 31 callers
Method
insert
deps/boost/libs/regex/src/regex_raw_buffer.cpp:61
↓ 31 callers
Function
setValue
deps/seqan-library-2.0.0/include/seqan/basic/tuple_base.h:379
↓ 31 callers
Function
thread_resource_error
deps/boost/boost/thread/exceptions.hpp:130
↓ 31 callers
Function
value
deps/seqan-library-2.0.0/include/seqan/sequence/string_base.h:424
↓ 31 callers
Function
value
deps/seqan-library-2.0.0/include/seqan/seeds/basic_iter_indirect.h:173
↓ 30 callers
Function
_setUpAndRunAlignment
deps/seqan-library-2.0.0/include/seqan/align/dp_setup.h:269
↓ 30 callers
Function
a
(e)
deps/boost/libs/locale/doc/html/jquery.js:27
↓ 30 callers
Function
begin
deps/seqan-library-2.0.0/include/seqan/seeds/seeds_seed_chained.h:384
↓ 30 callers
Method
begin
deps/boost/boost/unordered/unordered_map.hpp:1323
↓ 30 callers
Function
die
deps/jellyfish-2.2.0/include/jellyfish/err.hpp:85
↓ 30 callers
Method
empty
deps/boost/boost/array.hpp:153
↓ 30 callers
Function
find
<b>Effects</b>: Determines the lowest position xpos, if possible, such that both of the following conditions hold: 1) pos <= xpos and xpos + str.size(
deps/boost/boost/container/string.hpp:2247
↓ 30 callers
Function
findEdge
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_hmm.h:492
↓ 30 callers
Function
getValueById
deps/seqan-library-2.0.0/include/seqan/sequence/string_base.h:2049
↓ 30 callers
Function
goPrevious
deps/seqan-library-2.0.0/include/seqan/align/matrix_base.h:707
↓ 30 callers
Function
haystack
deps/seqan-library-2.0.0/include/seqan/find/find_base.h:940
↓ 30 callers
Function
index
deps/boost/boost/range/adaptor/indexed.hpp:340
↓ 30 callers
Function
length
deps/seqan-library-2.0.0/include/seqan/sequence_journaled/sequence_journaled.h:805
↓ 30 callers
Method
message
deps/boost/libs/system/test/std_interop_test.cpp:144
↓ 30 callers
Function
pthread_mutex_lock
deps/boost/boost/thread/pthread/mutex.hpp:57
↓ 30 callers
Function
pthread_mutex_unlock
deps/boost/boost/thread/pthread/mutex.hpp:66
↓ 30 callers
Method
setg
deps/seqan-library-2.0.0/include/seqan/stream/file_stream.h:950
↓ 30 callers
Method
size
lib/include/kat/comp_counters.hpp:104
↓ 30 callers
Method
size
deps/boost/boost/test/utils/basic_cstring/basic_cstring.hpp:252
↓ 30 callers
Method
start
deps/boost/libs/timer/src/cpu_timer.cpp:189
↓ 30 callers
Function
str
deps/boost/boost/format/free_funcs.hpp:21
↓ 30 callers
Method
value_ptr
deps/boost/boost/unordered/detail/implementation.hpp:4729
↓ 29 callers
Function
concat
deps/seqan-library-2.0.0/include/seqan/sequence/string_set_base.h:1601
↓ 29 callers
Method
elapsed
deps/boost/libs/timer/src/cpu_timer.cpp:208
↓ 29 callers
Function
endRead
deps/seqan-library-2.0.0/include/seqan/pipe/pipe_base.h:585
↓ 29 callers
Method
find_node
deps/boost/boost/unordered/detail/implementation.hpp:3436
↓ 29 callers
Function
from_utf
deps/boost/libs/locale/src/encoding/codepage.cpp:147
↓ 29 callers
Function
infix
deps/seqan-library-2.0.0/include/seqan/sequence/segment_infix.h:618
↓ 29 callers
Function
month
deps/boost/boost/date_time/date.hpp:83
↓ 29 callers
Function
ordValue
deps/seqan-library-2.0.0/include/seqan/modifier/modifier_alphabet.h:104
↓ 29 callers
Method
release
deps/boost/boost/container/detail/destroyers.hpp:259
↓ 29 callers
Function
repLength
deps/seqan-library-2.0.0/include/seqan/index/index_esa_algs.h:671
↓ 29 callers
Function
scoreGapOpen
deps/seqan-library-2.0.0/include/seqan/score/score_edit.h:125
↓ 29 callers
Method
to_str
Transfomr the k-mer into a C++ string.
deps/jellyfish-2.2.0/include/jellyfish/mer_dna.hpp:442
↓ 28 callers
Function
BOOST_CONCEPT_USAGE
deps/boost/boost/concept_check.hpp:72
↓ 28 callers
Function
_setFinderEnd
deps/seqan-library-2.0.0/include/seqan/find/find_base.h:378
↓ 28 callers
Method
ary
deps/jellyfish-2.2.0/include/jellyfish/hash_counter.hpp:78
↓ 28 callers
Function
beginRead
deps/seqan-library-2.0.0/include/seqan/pipe/pipe_base.h:562
↓ 28 callers
Method
default_error_condition
deps/boost/libs/system/test/std_interop_test.cpp:152
↓ 28 callers
Method
end
deps/boost/boost/algorithm/string/detail/util.hpp:50
↓ 28 callers
Function
enter_once_region
deps/boost/boost/thread/win32/once.hpp:178
↓ 28 callers
Function
find_if
deps/boost/boost/container/detail/algorithm.hpp:111
↓ 28 callers
Function
getTransitionProbability
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_hmm.h:756
↓ 28 callers
Function
length
deps/seqan-library-2.0.0/include/seqan/basic/tuple_base.h:445
↓ 28 callers
Method
numerator
Access to representation
deps/seqan-library-2.0.0/include/seqan/math/math_rational.h:105
↓ 28 callers
Method
priv_size
deps/boost/boost/container/string.hpp:405
↓ 28 callers
Method
randomize
Change the mer to a random one
deps/jellyfish-2.2.0/swig/python/jellyfish.py:117
↓ 28 callers
Function
rethrow_exception
deps/boost/boost/exception/detail/exception_ptr.hpp:458
↓ 28 callers
Function
rollback_once_region
deps/boost/boost/thread/win32/once.hpp:213
↓ 28 callers
Method
swap
deps/boost/boost/unordered/unordered_map.hpp:1600
↓ 28 callers
Method
what
deps/boost/boost/format/exceptions.hpp:33
↓ 27 callers
Function
_finderSetNonEmpty
deps/seqan-library-2.0.0/include/seqan/find/find_base.h:696
↓ 27 callers
Function
_setFinderLength
deps/seqan-library-2.0.0/include/seqan/find/find_base.h:405
↓ 27 callers
Function
capacity
deps/seqan-library-2.0.0/include/seqan/sequence/string_array.h:228
↓ 27 callers
Method
code
deps/jellyfish-2.2.0/include/jellyfish/mer_dna.hpp:382
↓ 27 callers
Function
container
deps/seqan-library-2.0.0/include/seqan/sequence/string_packed_old.h:908
↓ 27 callers
Function
container
deps/seqan-library-2.0.0/include/seqan/align/align_iterator_base.h:150
↓ 27 callers
Function
coordinate
deps/seqan-library-2.0.0/include/seqan/align/dp_matrix.h:688
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