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Functions22,481 in github.com/EarlhamInst/KAT

⨍ Functions 22,481◇ Types & classes 25,829
↓ 8 callersFunctionget_default_class_id
deps/boost/boost/regex/v4/regex_traits_defaults.hpp:166
↓ 8 callersMethodget_impl
deps/boost/boost/optional/optional.hpp:742
↓ 8 callersMethodget_impl
deps/boost/boost/optional/detail/old_optional_implementation.hpp:591
↓ 8 callersMethodget_pattern
deps/boost/boost/chrono/io/duration_units.hpp:357
↓ 8 callersMethodget_reverse_complement
Return the reverse complement of the mer
deps/jellyfish-2.2.0/swig/python/jellyfish.py:145
↓ 8 callersMethodget_time
deps/boost/libs/locale/src/icu/date_time.cpp:152
↓ 8 callersMethodget_value
deps/boost/libs/locale/src/icu/date_time.cpp:98
↓ 8 callersMethodgetaddress
deps/boost/boost/regex/v4/basic_regex_creator.hpp:200
↓ 8 callersMethodincTM
lib/include/kat/sparse_matrix.hpp:337
↓ 8 callersMethodincr
deps/boost/boost/move/detail/destruct_n.hpp:38
↓ 8 callersMethodincrement
deps/boost/boost/filesystem/operations.hpp:1078
↓ 8 callersFunctioninfix
deps/seqan-library-2.0.0/include/seqan/sequence/string_set_concat_direct.h:495
↓ 8 callersFunctioninspect_duration
deps/boost/libs/chrono/example/test_duration.cpp:36
↓ 8 callersFunctionintegral_constant_type_check
deps/boost/libs/config/test/cstdint_test.cpp:101
↓ 8 callersFunctionintegral_constant_type_check
deps/boost/libs/config/test/cstdint_test2.cpp:111
↓ 8 callersFunctionisSet
deps/seqan-library-2.0.0/include/seqan/arg_parse/argument_parser.h:544
↓ 8 callersFunctionis_partitioned
deps/boost/boost/algorithm/cxx11/is_partitioned.hpp:29
↓ 8 callersFunctionis_punct
is_punct predicate ! Construct the \c is_classified predicate for the \c ctype_base::punct category. \param Loc A locale u
deps/boost/boost/algorithm/string/classification.hpp:160
↓ 8 callersFunctionkill
deps/seqan-library-2.0.0/include/seqan/system/system_thread.h:214
↓ 8 callersFunctionlast_max_element
deps/boost/boost/algorithm/minmax_element.hpp:313
↓ 8 callersFunctionlast_min_element
deps/boost/boost/algorithm/minmax_element.hpp:281
↓ 8 callersFunctionlast_write_time
deps/boost/libs/filesystem/src/operations.cpp:1461
↓ 8 callersFunctionlength
deps/seqan-library-2.0.0/include/seqan/pipe/pipe_edit_environment.h:319
↓ 8 callersFunctionlength
deps/seqan-library-2.0.0/include/seqan/pipe/pipe_source.h:136
↓ 8 callersFunctionlength
deps/seqan-library-2.0.0/include/seqan/misc/edit_environment.h:623
↓ 8 callersFunctionlength
deps/seqan-library-2.0.0/include/seqan/align/gaps_anchor.h:520
↓ 8 callersMethodloadHeader
lib/src/input_handler.cc:139
↓ 8 callersFunctionmake_utf32_seq
deps/boost/boost/regex/icu.hpp:782
↓ 8 callersMethodmark_count
deps/boost/boost/regex/v4/basic_regex.hpp:528
↓ 8 callersMethodmatch
deps/boost/libs/program_options/src/options_description.cpp:73
↓ 8 callersMethodmax_reprobe_offset
deps/jellyfish-2.2.0/include/jellyfish/file_header.hpp:78
↓ 8 callersFunctionmax_size
deps/boost/boost/container/detail/tree.hpp:854
↓ 8 callersFunctionmerge_bufferless
deps/boost/boost/move/algo/detail/merge.hpp:388
↓ 8 callersFunctionmismatch_impl
deps/boost/boost/range/algorithm/mismatch.hpp:25
↓ 8 callersFunctionmove
deps/seqan-library-2.0.0/include/seqan/sequence/string_base.h:1128
↓ 8 callersMethodnext
deps/jellyfish-2.2.0/swig/ruby/swig_wrap.cpp:2242
↓ 8 callersFunctionnumVertices
deps/seqan-library-2.0.0/include/seqan/graph_align/graph_impl_align.h:388
↓ 8 callersFunctionopen
deps/seqan-library-2.0.0/include/seqan/index/index_fm.h:431
↓ 8 callersFunctionoperator delete
deps/boost/boost/move/detail/placement_new.hpp:27
↓ 8 callersFunctionoperator new
avoid including <new>
deps/boost/boost/move/detail/placement_new.hpp:24
↓ 8 callersMethodpages
deps/seqan-library-2.0.0/include/seqan/pipe/pool_base.h:926
↓ 8 callersMethodpolyC
Change the mer to a homopolymer of C
deps/jellyfish-2.2.0/swig/python/jellyfish.py:105
↓ 8 callersMethodpolyG
Change the mer to a homopolymer of G
deps/jellyfish-2.2.0/swig/python/jellyfish.py:109
↓ 8 callersMethodpolyT
Change the mer to a homopolymer of T
deps/jellyfish-2.2.0/swig/python/jellyfish.py:113
↓ 8 callersMethodpop
deps/jellyfish-2.2.0/include/jellyfish/mer_heap.hpp:106
↓ 8 callersFunctionposition
deps/seqan-library-2.0.0/include/seqan/stream/iter_stream.h:670
↓ 8 callersFunctionpositionGapToSeq
deps/seqan-library-2.0.0/include/seqan/align/gaps_anchor.h:780
↓ 8 callersFunctionpreviousCellDiagonal
deps/seqan-library-2.0.0/include/seqan/align/dp_matrix_navigator_score_matrix.h:368
↓ 8 callersFunctionpreviousCellHorizontal
deps/seqan-library-2.0.0/include/seqan/align/dp_matrix_navigator_score_matrix.h:386
↓ 8 callersFunctionpreviousCellVertical
deps/seqan-library-2.0.0/include/seqan/align/dp_matrix_navigator_score_matrix.h:404
↓ 8 callersFunctionpriv_uninitialized_copy
deps/boost/boost/container/string.hpp:2886
↓ 8 callersFunctionreadRecord
deps/seqan-library-2.0.0/include/seqan/seq_io/read_embl.h:111
↓ 8 callersFunctionrelative
deps/boost/libs/filesystem/src/operations.cpp:1652
↓ 8 callersMethodrelease
deps/boost/boost/move/detail/destruct_n.hpp:48
↓ 8 callersFunctionreplace
deps/seqan-library-2.0.0/include/seqan/sequence/string_base.h:1451
↓ 8 callersMethodreset
deps/boost/libs/algorithm/minmax/test/minmax_element_test.cpp:77
↓ 8 callersMethodresize
src/filter_kmer.hpp:77
↓ 8 callersFunctionreturn_from_nested_namespaces
deps/boost/libs/stacktrace/test/test_impl.cpp:53
↓ 8 callersFunctionrotate_gcd
deps/boost/boost/move/algo/detail/merge.hpp:74
↓ 8 callersFunctions_compare
deps/boost/boost/container/string.hpp:2803
↓ 8 callersFunctionsave
deps/seqan-library-2.0.0/include/seqan/index/index_fm.h:461
↓ 8 callersMethodsetCanonical
src/gcp.hpp:90
↓ 8 callersMethodset_size
deps/boost/boost/intrusive/detail/size_holder.hpp:39
↓ 8 callersMethodset_timezone
deps/boost/libs/locale/src/icu/date_time.cpp:238
↓ 8 callersFunctionshl_char_array
deps/boost/boost/lexical_cast/detail/converter_lexical_streams.hpp:203
↓ 8 callersFunctionsize
deps/boost/boost/range/size.hpp:54
↓ 8 callersMethodsource_line
deps/boost/boost/stacktrace/detail/addr2line_impls.hpp:206
↓ 8 callersFunctionsp_deleter_construct
deps/boost/boost/smart_ptr/shared_ptr.hpp:307
↓ 8 callersMethodstddev
(self, stddev=None)
scripts/kat/peak.py:44
↓ 8 callersMethodstr
Translate message to a string in the default global locale, using default domain
deps/boost/boost/locale/message.hpp:360
↓ 8 callersFunctiontest
deps/boost/libs/chrono/test/time_point/time_point_cast_pass.cpp:29
↓ 8 callersFunctiontest
deps/boost/libs/chrono/test/duration/duration_cast_pass.cpp:30
↓ 8 callersFunctiontest_good_symbol
deps/boost/libs/chrono/test/io/duration_output.cpp:20
↓ 8 callersFunctiontest_sequence
deps/boost/libs/algorithm/test/find_if_not_test1.cpp:41
↓ 8 callersFunctiontest_sequence
deps/boost/libs/algorithm/test/partition_copy_test1.cpp:28
↓ 8 callersFunctiontest_sequence
deps/boost/libs/algorithm/test/partition_point_test1.cpp:41
↓ 8 callersFunctiontest_skip
deps/boost/libs/locale/test/test_codepage.cpp:336
↓ 8 callersFunctiontie
deps/boost/libs/algorithm/minmax/test/minmax_element_test.cpp:63
↓ 8 callersFunctionto_lower_copy
deps/boost/boost/algorithm/string/case_conv.hpp:54
↓ 8 callersFunctionto_nanoseconds_int_max
deps/boost/boost/thread/pthread/timespec.hpp:66
↓ 8 callersFunctionto_string_stub
deps/boost/boost/exception/to_string_stub.hpp:91
↓ 8 callersFunctiontrim
deps/boost/boost/algorithm/string/trim.hpp:373
↓ 8 callersMethodtry_emplace_hint_unique
deps/boost/boost/unordered/detail/implementation.hpp:3668
↓ 8 callersMethodunlock
deps/boost/libs/regex/src/fileiter.cpp:293
↓ 8 callersMethodupdate
deps/boost/libs/regex/src/cregex.cpp:107
↓ 8 callersMethodvalidateInput
lib/src/input_handler.cc:97
↓ 8 callersMethodword_offset
deps/jellyfish-2.2.0/include/jellyfish/offsets_key_value.hpp:138
↓ 8 callersFunctionwrite
deps/seqan-library-2.0.0/include/seqan/sequence/string_set_base.h:1781
↓ 8 callersMethodwrite
deps/boost/boost/locale/format.hpp:90
↓ 8 callersFunctionwriteWrappedString
deps/seqan-library-2.0.0/include/seqan/stream/tokenization.h:464
↓ 7 callersMethodArgumentParser
deps/seqan-library-2.0.0/include/seqan/arg_parse/argument_parser.h:224
↓ 7 callersFunctionBOOST_PP_ENUM_BINARY_PARAMS
deps/boost/boost/parameter/parameters.hpp:810
↓ 7 callersFunctionBoolFromGTestEnv
Reads and returns the Boolean environment variable corresponding to the given flag; if it's not set, returns default_value. The value is considered t
tests/gtest/src/gtest-all.cc:8976
↓ 7 callersFunctionBoolFromGTestEnv
Reads and returns the Boolean environment variable corresponding to the given flag; if it's not set, returns default_value. The value is considered t
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:8976
↓ 7 callersFunctionForEach
tests/gtest/src/gtest-all.cc:696
↓ 7 callersFunctionForEach
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:696
↓ 7 callersFunctionGTEST_LOCK_EXCLUDED_
tests/gtest/src/gtest-all.cc:4998
↓ 7 callersFunctionGTEST_LOCK_EXCLUDED_
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:4998
↓ 7 callersFunctionSEQAN_ASSERT_NOT_MSG
deps/seqan-library-2.0.0/include/seqan/basic/debug_test_system.h:2596
↓ 7 callersFunctionSWIG_TypeClientData
Set the clientdata field for a type */
deps/jellyfish-2.2.0/swig/ruby/swig_wrap.cpp:624
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