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Functions22,481 in github.com/EarlhamInst/KAT

↓ 7 callersFunctionSWIG_TypeClientData
Set the clientdata field for a type */
deps/jellyfish-2.2.0/swig/perl5/swig_wrap.cpp:516
↓ 7 callersFunctionStringStreamToString
Converts the buffer in a stringstream to an std::string, converting NUL bytes to "\\0" along the way.
tests/gtest/src/gtest-all.cc:3143
↓ 7 callersFunctionStringStreamToString
Converts the buffer in a stringstream to an std::string, converting NUL bytes to "\\0" along the way.
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:3143
↓ 7 callersFunctionSumOverTestCaseList
Iterates over a vector of TestCases, keeping a running sum of the results of calling a given int-returning method on each. Returns the sum.
tests/gtest/src/gtest-all.cc:1805
↓ 7 callersFunctionSumOverTestCaseList
Iterates over a vector of TestCases, keeping a running sum of the results of calling a given int-returning method on each. Returns the sum.
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:1805
↓ 7 callersFunction_deallocateStorage
deps/seqan-library-2.0.0/include/seqan/sequence/string_alloc.h:370
↓ 7 callersFunction_fixBandSize
deps/seqan-library-2.0.0/include/seqan/realign/realign_base.h:969
↓ 7 callersFunction_getEndHorizontal
deps/seqan-library-2.0.0/include/seqan/align/dp_trace_segment.h:169
↓ 7 callersFunction_getEndVertical
deps/seqan-library-2.0.0/include/seqan/align/dp_trace_segment.h:185
↓ 7 callersFunction_getInfinityDistance
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_interface.h:641
↓ 7 callersFunction_globalAlignment
deps/seqan-library-2.0.0/include/seqan/align/global_alignment_hirschberg_impl.h:371
↓ 7 callersFunction_goUp
deps/seqan-library-2.0.0/include/seqan/index/index_sa_stree.h:598
↓ 7 callersFunction_localEntryPosition
deps/seqan-library-2.0.0/include/seqan/sequence_journaled/sequence_journaled_iterator_fast.h:200
↓ 7 callersFunction_qgramCummulativeSum
deps/seqan-library-2.0.0/include/seqan/index/index_qgram.h:1096
↓ 7 callersFunction_setIntervalTreeNode
deps/seqan-library-2.0.0/include/seqan/misc/interval_tree.h:792
↓ 7 callersFunction_storeAppendAnnotationName
deps/seqan-library-2.0.0/include/seqan/store/store_all.h:832
↓ 7 callersFunction_transform
deps/seqan-library-2.0.0/include/seqan/index/shape_threshold.h:263
↓ 7 callersFunction_translateString
deps/seqan-library-2.0.0/include/seqan/translation/translation.h:179
↓ 7 callersFunction_upperBoundSA
deps/seqan-library-2.0.0/include/seqan/index/find_index_esa.h:664
↓ 7 callersFunctiona0
(bv,e)
deps/boost/libs/locale/doc/html/jquery.js:30
↓ 7 callersFunctionabs
deps/seqan-library-2.0.0/include/seqan/math/math_rational.h:544
↓ 7 callersFunctionabsolute_value
JDG [7/6/02 made a template], moved here from time_duration.hpp 2003-Sept-4.
deps/boost/boost/date_time/time_resolution_traits.hpp:25
↓ 7 callersMethodadvance
deps/boost/boost/container/detail/iterators.hpp:481
↓ 7 callersFunctionadvanceChunk
deps/seqan-library-2.0.0/include/seqan/stream/iter_stream.h:524
↓ 7 callersFunctionall
deps/boost/boost/algorithm/string/predicate.hpp:438
↓ 7 callersFunctionarrayConstructMove
deps/seqan-library-2.0.0/include/seqan/basic/array_construct_destruct.h:588
↓ 7 callersFunctionarrayCopy
deps/seqan-library-2.0.0/include/seqan/basic/array_construct_destruct.h:790
↓ 7 callersFunctionarrayCopyForward
deps/seqan-library-2.0.0/include/seqan/sequence/string_packed.h:873
↓ 7 callersFunctionarrayDestruct
deps/seqan-library-2.0.0/include/seqan/basic/array_construct_destruct.h:626
↓ 7 callersMethodasUInt
deps/jellyfish-2.2.0/lib/jsoncpp.cpp:2258
↓ 7 callersFunctionassign
deps/seqan-library-2.0.0/include/seqan/sequence_journaled/sequence_journaled.h:405
↓ 7 callersFunctionassign
deps/seqan-library-2.0.0/include/seqan/basic/holder_simple.h:320
↓ 7 callersMethodassign
Assigns from another optional<T> (deep-copies the rhs value)
deps/boost/boost/optional/detail/old_optional_implementation.hpp:211
↓ 7 callersFunctionatEnd
deps/seqan-library-2.0.0/include/seqan/index/find_backtracking.h:762
↓ 7 callersFunctionatEnd
deps/seqan-library-2.0.0/include/seqan/index/find_index.h:201
↓ 7 callersMethodatEnd
deps/seqan-library-2.0.0/include/seqan/index/find_index_esa.h:132
↓ 7 callersFunctionatomic_write32
Atomically set an boost::uint32_t in memory "mem": pointer to the object "param": val value that the object will assume
deps/boost/boost/interprocess/detail/atomic.hpp:103
↓ 7 callersFunctionbegin
deps/seqan-library-2.0.0/include/seqan/sequence/string_block.h:204
↓ 7 callersFunctionbegin
deps/seqan-library-2.0.0/include/seqan/sequence/adapt_std_string.h:185
↓ 7 callersFunctionbegin
deps/seqan-library-2.0.0/include/seqan/modifier/modifier_string.h:624
↓ 7 callersFunctionbeginDiagonal
deps/seqan-library-2.0.0/include/seqan/seeds/seeds_seed_base.h:501
↓ 7 callersFunctionbw
()
deps/boost/libs/locale/doc/html/jquery.js:16
↓ 7 callersMethodcbegin
deps/jellyfish-2.2.0/include/jellyfish/cpp_array.hpp:138
↓ 7 callersFunctionceilLog2
deps/jellyfish-2.2.0/include/jellyfish/misc.hpp:56
↓ 7 callersMethodcend
deps/jellyfish-2.2.0/include/jellyfish/cpp_array.hpp:139
↓ 7 callersFunctioncheck_first_occurrence
deps/boost/libs/program_options/src/value_semantic.cpp:203
↓ 7 callersFunctionclear
! * @fn GffRecord#clear * @brief Reset a @link GffRecord @endlink object. * * @signature void clear(record); * * @param[in,out] record The GffRe
deps/seqan-library-2.0.0/include/seqan/gff_io/gff_io_base.h:315
↓ 7 callersFunctionclear
deps/seqan-library-2.0.0/include/seqan/stream/file_stream.h:71
↓ 7 callersMethodclear
deps/boost/boost/move/algo/detail/adaptive_sort_merge.hpp:378
↓ 7 callersMethodclear
deps/seqan-library-2.0.0/include/seqan/sequence/container_view.h:644
↓ 7 callersMethodcommit
deps/boost/boost/unordered/detail/implementation.hpp:2752
↓ 7 callersFunctioncompare
deps/boost/libs/locale/src/shared/date_time.cpp:365
↓ 7 callersFunctioncondition_error
deps/boost/boost/thread/exceptions.hpp:79
↓ 7 callersFunctionconvertAlignment
deps/seqan-library-2.0.0/include/seqan/graph_msa/graph_align_tcoffee_base.h:973
↓ 7 callersFunctioncopy_n
deps/boost/boost/algorithm/cxx11/copy_n.hpp:27
↓ 7 callersMethodcopy_n_and_update
deps/boost/boost/container/detail/advanced_insert_int.hpp:163
↓ 7 callersFunctioncreate_directory_symlink
deps/boost/libs/filesystem/src/operations.cpp:1123
↓ 7 callersMethoddate_flags
deps/boost/libs/locale/src/shared/formatting.cpp:100
↓ 7 callersFunctionday_of_week
Get period_type for: Day of week, Sunday=1, Monday=2,..., Saturday=7. Note that updating this value respects local day of week, so for example, If fi
deps/boost/boost/locale/date_time.hpp:112
↓ 7 callersMethoddefaulted
deps/boost/boost/program_options/variables_map.hpp:194
↓ 7 callersMethoddestroy_alloc
deps/boost/boost/container/node_handle.hpp:141
↓ 7 callersFunctiondo_make_u32regex
deps/boost/boost/regex/icu.hpp:249
↓ 7 callersFunctionend
deps/seqan-library-2.0.0/include/seqan/sequence_journaled/sequence_journaled_iterator.h:350
↓ 7 callersFunctionend
deps/seqan-library-2.0.0/include/seqan/sequence/string_set_base.h:1407
↓ 7 callersFunctionendPosition
deps/seqan-library-2.0.0/include/seqan/sequence/segment_prefix.h:293
↓ 7 callersFunctionequal
deps/boost/boost/regex/v4/regex_workaround.hpp:146
↓ 7 callersFunctionequal
deps/boost/libs/locale/test/test_winapi_formatting.cpp:39
↓ 7 callersMethodequal_range
deps/boost/boost/unordered/unordered_map.hpp:1707
↓ 7 callersMethoderase
deps/boost/boost/test/utils/named_params.hpp:252
↓ 7 callersFunctioneval
deps/boost/boost/bind/bind_template.hpp:316
↓ 7 callersMethodfilename_is_dot_dot
deps/boost/boost/filesystem/path.hpp:868
↓ 7 callersFunctionforward_as_tuple
deps/boost/boost/container/detail/variadic_templates_tools.hpp:81
↓ 7 callersFunctionfrom_time_t
Function that converts a time_t into a ptime.
deps/boost/boost/date_time/posix_time/conversion.hpp:26
↓ 7 callersFunctionfun
deps/boost/libs/filesystem/test/path_unit_test.cpp:146
↓ 7 callersFunctiongcd
deps/boost/boost/integer/common_factor_rt.hpp:481
↓ 7 callersFunctionget_code_page_for_locale_id
deps/boost/libs/regex/src/w32_regex_traits.cpp:46
↓ 7 callersMethodget_count
deps/boost/boost/regex/v4/perl_matcher.hpp:304
↓ 7 callersMethodget_id
deps/boost/boost/regex/v4/perl_matcher.hpp:305
↓ 7 callersMethodget_ptr
Returns a pointer to the value if this is initialized, otherwise, returns NULL. No-throw
deps/boost/boost/optional/optional.hpp:375
↓ 7 callersFunctionget_vtable
deps/boost/boost/function/function_template.hpp:673
↓ 7 callersFunctiongoLeftChild
deps/seqan-library-2.0.0/include/seqan/index/index_fm_right_array_binary_tree_iterator.h:432
↓ 7 callersFunctiongoRightChild
deps/seqan-library-2.0.0/include/seqan/index/index_fm_right_array_binary_tree_iterator.h:497
↓ 7 callersFunctiongoUp
deps/seqan-library-2.0.0/include/seqan/index/index_esa_stree.h:2094
↓ 7 callersFunctionif
deps/boost/libs/locale/src/shared/mo_lambda.cpp:286
↓ 7 callersMethodinit
deps/seqan-library-2.0.0/include/seqan/basic/test_system.h:124
↓ 7 callersFunctioninsert
<b>Effects</b>: Inserts a copy of x in the container if and only if there is no element in the container with key equivalent to the key of x. p is a h
deps/boost/boost/container/map.hpp:730
↓ 7 callersMethodinsert
deps/boost/boost/unordered/unordered_map.hpp:1172
↓ 7 callersMethodinsert
deps/boost/boost/algorithm/searching/detail/bm_traits.hpp:86
↓ 7 callersMethodinsert_after
<b>Requires</b>: value must be an lvalue and prev_p must point to an element contained by the list or to end(). <b>Effects</b>: Inserts the value aft
deps/boost/boost/intrusive/slist.hpp:822
↓ 7 callersFunctioninsertion_sort
deps/boost/boost/move/algo/detail/insertion_sort.hpp:76
↓ 7 callersFunctionintrusive_ptr_add_ref
deps/boost/boost/thread/win32/thread_data.hpp:140
↓ 7 callersFunctionisBooleanOption
deps/seqan-library-2.0.0/include/seqan/arg_parse/arg_parse_option.h:176
↓ 7 callersFunctionisGap
deps/seqan-library-2.0.0/include/seqan/align/gaps_iterator_anchor.h:227
↓ 7 callersFunctionisInt64Argument
deps/seqan-library-2.0.0/include/seqan/arg_parse/arg_parse_argument.h:333
↓ 7 callersMethodis_empty
deps/boost/boost/test/utils/basic_cstring/basic_cstring.hpp:261
↓ 7 callersMethodis_neg_infinity
check to see if date is greater than all possible dates
deps/boost/boost/date_time/time.hpp:116
↓ 7 callersFunctionis_special
check to see if date is a special value
deps/boost/boost/date_time/date.hpp:111
↓ 7 callersFunctionis_valid_codepoint
\brief the function checks if \a v is a valid code point
deps/boost/boost/locale/utf.hpp:49
↓ 7 callersMethoditerator
deps/boost/boost/unordered/detail/implementation.hpp:2235
↓ 7 callersFunctionlayoutAlignment
deps/seqan-library-2.0.0/include/seqan/store/store_all.h:1554
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