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Functions22,481 in github.com/EarlhamInst/KAT

↓ 9 callersFunctiontest_ntranslate
deps/boost/libs/locale/test/test_message.cpp:265
↓ 9 callersFunctiontest_translate
deps/boost/libs/locale/test/test_message.cpp:295
↓ 9 callersFunctiontime_fmt
deps/boost/boost/chrono/io/time_point_io.hpp:505
↓ 9 callersFunctionto_time_t
these constants come from inspecting some Microsoft sample code
deps/boost/libs/filesystem/src/operations.cpp:635
↓ 9 callersFunctiontrim_copy_if
deps/boost/boost/algorithm/string/trim.hpp:281
↓ 9 callersFunctionvalueConstruct
deps/seqan-library-2.0.0/include/seqan/basic/array_construct_destruct.h:314
↓ 9 callersMethodwait
deps/jellyfish-2.2.0/include/jellyfish/locks_pthread.hpp:52
↓ 9 callersFunctionwaitFor
deps/seqan-library-2.0.0/include/seqan/system/file_async.h:417
↓ 9 callersFunctionwrapper_address
deps/boost/boost/utility/value_init.hpp:95
↓ 8 callersFunctionGetEnv
tests/gtest/gtest.h:2899
↓ 8 callersFunctionGetEnv
deps/jellyfish-2.2.0/unit_tests/gtest/gtest.h:2899
↓ 8 callersFunctionGetProcessTimes
deps/boost/boost/winapi/get_process_times.hpp:40
↓ 8 callersFunctionGetTimeInMillis
Returns the current time in milliseconds.
tests/gtest/src/gtest-all.cc:2264
↓ 8 callersFunctionGetTimeInMillis
Returns the current time in milliseconds.
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:2264
↓ 8 callersFunctionHandleExceptionsInMethodIfSupported
tests/gtest/src/gtest-all.cc:3570
↓ 8 callersFunctionHandleExceptionsInMethodIfSupported
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:3570
↓ 8 callersFunctionIsSubstringImpl
tests/gtest/src/gtest-all.cc:2744
↓ 8 callersFunctionIsSubstringImpl
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:2744
↓ 8 callersFunctionParseBoolFlag
Parses a string for a bool flag, in the form of either "--flag=value" or "--flag". In the former case, the value is taken as true as long as it does
tests/gtest/src/gtest-all.cc:6199
↓ 8 callersFunctionParseBoolFlag
Parses a string for a bool flag, in the form of either "--flag=value" or "--flag". In the former case, the value is taken as true as long as it does
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:6199
↓ 8 callersFunctionParseNaturalNumber
tests/gtest/src/gtest-all.cc:1403
↓ 8 callersFunctionParseNaturalNumber
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:1403
↓ 8 callersFunctionPrintCharsAsStringTo
tests/gtest/src/gtest-all.cc:9268
↓ 8 callersFunctionPrintCharsAsStringTo
deps/jellyfish-2.2.0/unit_tests/gtest/src/gtest-all.cc:9268
↓ 8 callersFunctionSWIG_AsVal_size_t
deps/jellyfish-2.2.0/swig/python/swig_wrap.cpp:3600
↓ 8 callersFunctionSWIG_AsVal_size_t
deps/jellyfish-2.2.0/swig/ruby/swig_wrap.cpp:2264
↓ 8 callersFunctionSWIG_From_unsigned_SS_long
deps/jellyfish-2.2.0/swig/python/swig_wrap.cpp:3575
↓ 8 callersFunctionSWIG_Python_AppendOutput
deps/jellyfish-2.2.0/swig/python/swig_wrap.cpp:1270
↓ 8 callersFunctionUniversalPrint
tests/gtest/gtest.h:9943
↓ 8 callersFunctionUniversalPrint
deps/jellyfish-2.2.0/unit_tests/gtest/gtest.h:9943
↓ 8 callersFunction_adaptLocalTracesToGlobalGrid
deps/seqan-library-2.0.0/include/seqan/seeds/banded_chain_alignment_traceback.h:79
↓ 8 callersFunction_assignId
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_edgestump.h:976
↓ 8 callersFunction_computeCell
deps/seqan-library-2.0.0/include/seqan/align/dp_algorithm_impl.h:254
↓ 8 callersFunction_copyHeapElement
deps/seqan-library-2.0.0/include/seqan/misc/priority_type_heap.h:188
↓ 8 callersFunction_copySwiftHit
deps/seqan-library-2.0.0/include/seqan/index/find_swift.h:1885
↓ 8 callersFunction_createVertices
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_interface.h:671
↓ 8 callersFunction_cut
deps/seqan-library-2.0.0/include/seqan/index/find_backtracking.h:908
↓ 8 callersFunction_getScore
deps/seqan-library-2.0.0/include/seqan/index/find2_backtracking.h:888
↓ 8 callersFunction_glueTracebacks
deps/seqan-library-2.0.0/include/seqan/seeds/banded_chain_alignment_traceback.h:120
↓ 8 callersFunction_roundToSignificantFigures
Helper function for rounding to n significant digits. Ported from Java code found here: http://stackoverflow.com/questions/202302
deps/seqan-library-2.0.0/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:53
↓ 8 callersFunction_setLength
deps/seqan-library-2.0.0/include/seqan/align/gaps_array.h:234
↓ 8 callersFunction_setSizeInval
deps/seqan-library-2.0.0/include/seqan/index/index_base.h:1266
↓ 8 callersFunction_tell
deps/seqan-library-2.0.0/include/seqan/sequence/iter_concat_virtual.h:352
↓ 8 callersFunction_write
deps/seqan-library-2.0.0/include/seqan/basic/basic_stream.h:807
↓ 8 callersFunctiona_store
deps/jellyfish-2.2.0/include/jellyfish/atomic_field.hpp:29
↓ 8 callersMethodadd_class
deps/boost/boost/regex/v4/basic_regex_creator.hpp:101
↓ 8 callersMethodadd_node_unique
deps/boost/boost/unordered/detail/implementation.hpp:3546
↓ 8 callersMethodadopt
deps/boost/boost/exception/exception.hpp:58
↓ 8 callersMethodallow_unregistered
deps/boost/libs/program_options/src/cmdline.cpp:123
↓ 8 callersMethodas_int
Explicit converion method
deps/boost/boost/date_time/wrapping_int.hpp:39
↓ 8 callersFunctionassign
deps/seqan-library-2.0.0/include/seqan/sequence/string_packed_old.h:516
↓ 8 callersFunctionassign
deps/seqan-library-2.0.0/include/seqan/basic/fundamental_transport.h:100
↓ 8 callersFunctionassign
deps/seqan-library-2.0.0/include/seqan/file/string_external.h:2150
↓ 8 callersFunctionassignValue
deps/seqan-library-2.0.0/include/seqan/align/gaps_iterator_base.h:382
↓ 8 callersMethodat
<b>Requires</b>: size() > n. <b>Effects</b>: Returns a reference to the nth element from the beginning of the container. <b>Throws</b>: std::range_e
deps/boost/boost/container/string.hpp:1272
↓ 8 callersFunctionatEnd
deps/seqan-library-2.0.0/include/seqan/map/sumlist_mini.h:632
↓ 8 callersFunctionatomicDec
deps/seqan-library-2.0.0/include/seqan/parallel/parallel_atomic_primitives.h:298
↓ 8 callersFunctionatomic_add32
Atomically add 'val' to an boost::uint32_t "mem": pointer to the object "val": amount to add Returns the old value pointed to by mem
deps/boost/boost/interprocess/detail/atomic.hpp:150
↓ 8 callersFunctionatomic_cas32
Compare an boost::uint32_t's value with "cmp". If they are the same swap the value with "with" "mem": pointer to the value "with": what to swap it wit
deps/boost/boost/interprocess/detail/atomic.hpp:112
↓ 8 callersFunctionbase_t
<b>Effects</b>: Copy constructs a map. <b>Complexity</b>: Linear in x.size().
deps/boost/boost/container/map.hpp:343
↓ 8 callersFunctionbind2nd
deps/boost/boost/container/detail/algorithm.hpp:81
↓ 8 callersFunctionbundle2
deps/seqan-library-2.0.0/include/seqan/pipe/pipe_base.h:131
↓ 8 callersFunctionby
(bz)
deps/boost/libs/locale/doc/html/jquery.js:19
↓ 8 callersFunctioncalculateVariance
deps/seqan-library-2.0.0/include/seqan/alignment_free/kmer_functions.h:451
↓ 8 callersFunctioncapacity
deps/seqan-library-2.0.0/include/seqan/sequence/string_cstyle.h:375
↓ 8 callersFunctioncapacity
deps/seqan-library-2.0.0/include/seqan/file/string_mmap.h:282
↓ 8 callersFunctioncase_ins_eq
deps/boost/boost/test/utils/basic_cstring/compare.hpp:66
↓ 8 callersFunctionclear
deps/seqan-library-2.0.0/include/seqan/index/find_pigeonhole.h:613
↓ 8 callersFunctionclear
deps/seqan-library-2.0.0/include/seqan/index/find_swift.h:1401
↓ 8 callersFunctionclear
deps/seqan-library-2.0.0/include/seqan/vcf_io/vcf_record.h:189
↓ 8 callersMethodclear
deps/jellyfish-2.2.0/include/jellyfish/cpp_array.hpp:149
↓ 8 callersFunctionclose_handle
deps/boost/boost/interprocess/detail/win32_api.hpp:1299
↓ 8 callersFunctioncomputeGenerousCapacity
deps/seqan-library-2.0.0/include/seqan/sequence/sequence_interface.h:856
↓ 8 callersFunctionconflicting_options
Function used to check that 'opt1' and 'opt2' are not specified at the same time. */
deps/boost/libs/program_options/example/real.cpp:17
↓ 8 callersFunctionconstruct_node
deps/boost/boost/unordered/detail/implementation.hpp:1916
↓ 8 callersMethodcount
deps/jellyfish-2.2.0/swig/ruby/swig_wrap.cpp:2222
↓ 8 callersMethodcrbegin
deps/boost/boost/array.hpp:103
↓ 8 callersFunctioncreate
deps/seqan-library-2.0.0/include/seqan/sequence/string_cstyle.h:749
↓ 8 callersMethodcreate_calendar
deps/boost/libs/locale/src/util/gregorian.cpp:832
↓ 8 callersFunctioncreate_file_handle
deps/boost/libs/filesystem/src/operations.cpp:677
↓ 8 callersFunctioncref
deps/boost/boost/core/ref.hpp:150
↓ 8 callersMethodd
deps/jellyfish-2.2.0/include/jellyfish/divisor.hpp:119
↓ 8 callersFunctiondestroy_node
deps/boost/boost/container/detail/node_alloc_holder.hpp:59
↓ 8 callersFunctionduplicateStringValue
Duplicates the specified string value. * @param value Pointer to the string to duplicate. Must be zero-terminated if * length is "unkno
deps/jellyfish-2.2.0/lib/jsoncpp.cpp:1593
↓ 8 callersMethodemittedProbability
deps/seqan-library-2.0.0/include/seqan/statistics/statistics_markov_model.h:327
↓ 8 callersFunctionenable_current_exception
deps/boost/boost/exception/exception.hpp:510
↓ 8 callersFunctionend
deps/boost/boost/test/utils/foreach.hpp:115
↓ 8 callersFunctionend
deps/seqan-library-2.0.0/include/seqan/index/index_esa_stree.h:1645
↓ 8 callersMethodend
deps/seqan-library-2.0.0/include/seqan/pipe/pool_base.h:335
↓ 8 callersMethoderase_and_dispose
deps/boost/boost/intrusive/slist.hpp:1164
↓ 8 callersMethodescape_syntax_type
deps/boost/boost/regex/v4/regex_traits.hpp:108
↓ 8 callersFunctionfindInJournalEntries
deps/seqan-library-2.0.0/include/seqan/sequence_journaled/journal_entries_sorted_array.h:239
↓ 8 callersMethodfix_bucket
deps/boost/boost/unordered/detail/implementation.hpp:3282
↓ 8 callersFunctionflush
deps/seqan-library-2.0.0/include/seqan/stream/file_stream.h:629
↓ 8 callersMethodget
Read a Jellyfish database sequentially
deps/jellyfish-2.2.0/swig/python/jellyfish.py:330
↓ 8 callersFunctiongetAnnoName
deps/seqan-library-2.0.0/include/seqan/store/store_all.h:668
↓ 8 callersFunctiongetAnnoUniqueName
deps/seqan-library-2.0.0/include/seqan/store/store_all.h:682
↓ 8 callersFunctiongetBeginState
deps/seqan-library-2.0.0/include/seqan/graph_types/graph_impl_hmm.h:710
↓ 8 callersFunctiongetQualityValue
deps/seqan-library-2.0.0/include/seqan/basic/alphabet_residue.h:224
↓ 8 callersMethodget_canonical
Return canonical representation of the mer
deps/jellyfish-2.2.0/swig/python/jellyfish.py:141
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