A rectangle class that stores: . an axis aligned rectangle, and: two flags (swapped_x and swapped_y). (The flags are stored implicitly v

Print to screen and/or log if conditions are satisfied (Internal).

Iterate through large_image items in a girder folder.

Run workflow for all slides in a girder folder.

Iterate through annotations in a girder item (slide).

Placeholder.

Detect various regions in a single tissue piece (internal).

Detect cellular regions in a single tissue piece (internal).

Detect cellular regions in a slides by classifying superpixels. This uses Simple Linear Iterative Clustering (SLIC) to get superpixels at a l

Detect cellular regions in a slide using thresholding. This uses a thresholding and stain unmixing based pipeline to detect highly-cellular r

Methods to merge polygons in tiled masks.

Methods to merge contiguous polygons from whole-slide image.

Placeholder.

Just a base class with preferred behavior to inherit.

Labels for the output image of the positive pixel count routines.

Parameters(hue_value, hue_width, saturation_minimum, intensity_upper_limit, intensity_weak_threshold, intensity_strong_threshold, intensity_lo

Test utilities for annotations and masks.

Test methods for getting cellularity.

Test color augmentation.

Test color normalization.

Test girder database parser.

Test methods for getting ROI mask from annotations.

Test methods for getting ROI contours from annotations.

Test utilities for interaction with girder.

Test methods for getting ROI mask from annotations.

Test methods for polygon merger.

Test methods for getting review gallery.

Test methods for getting ROI mask from annotations.

Test slide and folder iterator & workflow runner.