MCPcopy Index your code
hub / github.com/DigitalSlideArchive/HistomicsTK

github.com/DigitalSlideArchive/HistomicsTK @v1.4.0

Chat with this repo
repository ↗ · DeepWiki ↗ · release v1.4.0 ↗ · + Follow
562 symbols 2,026 edges 161 files 368 documented · 65% updated 18d agov1.4.0 · 2025-02-07★ 47725 open issues

Browse by type

Functions 504 Types & classes 58
What it actually does AI analysis from the code graph — generated when you open this
loading…

Core symbols most depended-on inside this repo

Shape

Function 287
Method 217
Class 58

Languages

Python100%

Modules by API surface

histomicstk/annotations_and_masks/pyrtree/rtree.py36 symbols
histomicstk/annotations_and_masks/annotation_and_mask_utils.py23 symbols
histomicstk/annotations_and_masks/polygon_merger.py22 symbols
histomicstk/saliency/cellularity_detection_thresholding.py17 symbols
histomicstk/saliency/cellularity_detection_superpixels.py17 symbols
histomicstk/annotations_and_masks/pyrtree/rect.py17 symbols
histomicstk/annotations_and_masks/polygon_merger_v2.py17 symbols
histomicstk/cli/utils.py14 symbols
histomicstk/utils/girder_convenience_utils.py13 symbols
histomicstk/workflows/workflow_runner.py12 symbols
tests/test_feature_extraction.py10 symbols
tests/test_cli_results.py10 symbols

Datastores touched

(mongodb)Database · 1 repos
girderDatabase · 1 repos

For agents

$ claude mcp add HistomicsTK \
  -- python -m otcore.mcp_server <graph>

⬇ download graph artifact

Ask about this repo answers extend the page