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github.com/CellProfiler/CellProfiler-plugins
/ types & classes
Types & classes
129 in github.com/CellProfiler/CellProfiler-plugins
⨍
Functions
1,666
◇
Types & classes
129
↓ 15 callers
Class
MONAILabelClientException
MONAILabel Client Exception
active_plugins/runvista2d.py:509
↓ 4 callers
Class
ImageRepo
After initialization with input image it calculates on demand intermediate images such as foreground, background mask, and others.
unmaintained_plugins/CellProfiler3/cellstar/core/image_repo.py:13
↓ 4 callers
Class
Seed
Object of a seed. @ivar x: x coordinate of seed @ivar y: y coordinate of seed @ivar origin: where seed comes from ('content' or 'back
unmaintained_plugins/CellProfiler3/cellstar/core/seed.py:11
↓ 3 callers
Class
Point
@ivar x: x coordinate of point @ivar y: y coordinate of point
unmaintained_plugins/CellProfiler3/cellstar/core/point.py:11
↓ 2 callers
Class
AutoFitterThread
unmaintained_plugins/CellProfiler3/identifyyeastcells.py:1108
↓ 2 callers
Class
AutoFitterThread
unmaintained_plugins/CellProfiler4_autoconverted/identifyyeastcells.py:1111
↓ 2 callers
Class
OptimisationBounds
unmaintained_plugins/CellProfiler3/cellstar/parameter_fitting/pf_auto_params.py:28
↓ 2 callers
Class
PFRankSnake
unmaintained_plugins/CellProfiler3/cellstar/parameter_fitting/pf_rank_snake.py:18
↓ 2 callers
Class
PFSnake
unmaintained_plugins/CellProfiler3/cellstar/parameter_fitting/pf_snake.py:23
↓ 2 callers
Class
QueueManager
active_plugins/cpij/server.py:68
↓ 2 callers
Class
RunVISTA2D
active_plugins/runvista2d.py:709
↓ 2 callers
Class
Segmentation
unmaintained_plugins/CellProfiler3/cellstar/segmentation.py:26
↓ 2 callers
Class
SnakeFilter
Order snakes based on their ranking and checks them for violating other constraints. Discard snakes that overlap with already approved ones.
unmaintained_plugins/CellProfiler3/cellstar/core/snake_filter.py:16
↓ 1 callers
Class
Boolean
A helper setting for boolean values, converting 0 to False and any other number to True
active_plugins/cpij/server.py:94
↓ 1 callers
Class
Character
A Setting for text entries of size one
active_plugins/cpij/server.py:77
↓ 1 callers
Class
DefaultCoordinate
Override for the Coordinate setting to allow negative defaults.
unmaintained_plugins/CellProfiler3/activecontourmodel.py:29
↓ 1 callers
Class
DefaultCoordinate
Override for the Coordinate setting to allow negative defaults.
unmaintained_plugins/CellProfiler4_autoconverted/activecontourmodel.py:31
↓ 1 callers
Class
GTSnake
unmaintained_plugins/CellProfiler3/cellstar/parameter_fitting/pf_snake.py:122
↓ 1 callers
Class
MONAILabelClient
Basic MONAILabel Client to invoke infer/train APIs over http/https
active_plugins/runvista2d.py:69
↓ 1 callers
Class
QueueManager
active_plugins/cpij/bridge.py:8
↓ 1 callers
Class
SeedGrid
unmaintained_plugins/CellProfiler3/cellstar/core/seeder.py:287
↓ 1 callers
Class
Seeder
Find places for seeds based on images and previously found snakes.
unmaintained_plugins/CellProfiler3/cellstar/core/seeder.py:14
Class
ActiveContourModel
unmaintained_plugins/CellProfiler3/activecontourmodel.py:47
Class
ActiveContourModel
unmaintained_plugins/CellProfiler4_autoconverted/activecontourmodel.py:49
Class
AddNoise
active_plugins/addnoise.py:40
Class
BlobDetection
unmaintained_plugins/CellProfiler3/blobdetection.py:32
Class
BlobDetection
unmaintained_plugins/CellProfiler4_autoconverted/blobdetection.py:35
Class
BoxObjects
active_plugins/boxobjects.py:84
Class
CalculateHistogram
unmaintained_plugins/CellProfiler2/calculatehistogram.py:45
Class
CalculateHistogram
unmaintained_plugins/CellProfiler3/calculatehistogram.py:45
Class
CalculateHistogram
unmaintained_plugins/CellProfiler4_autoconverted/calculatehistogram.py:46
Class
CalculateMoments
unmaintained_plugins/CellProfiler2/calculatemoments.py:105
Class
CalculateMoments
unmaintained_plugins/CellProfiler3/calculatemoments.py:105
Class
CalculateMoments
unmaintained_plugins/CellProfiler4_autoconverted/calculatemoments.py:110
Class
CalculateMoments
active_plugins/calculatemoments.py:119
Class
CallBarcodes
unmaintained_plugins/CellProfiler3/callbarcodes.py:142
Class
CallBarcodes
active_plugins/callbarcodes.py:104
Class
ClassifyPixelsUnet
unmaintained_plugins/CellProfiler3/classifypixelsunet.py:99
Class
ClassifyPixelsUnet
unmaintained_plugins/CellProfiler4_autoconverted/classifypixelsunet.py:99
Class
CompensateColors
unmaintained_plugins/CellProfiler3/compensatecolors.py:88
Class
CompensateColors
active_plugins/compensatecolors.py:65
Class
ConstrainObjects
unmaintained_plugins/CellProfiler3/constrainobjects.py:35
Class
ConstrainObjects
unmaintained_plugins/CellProfiler4_autoconverted/constrainobjects.py:38
Class
ConvertOutlinesToObjects
unmaintained_plugins/CellProfiler3/convertoutlinestoobjects.py:28
Class
ConvertOutlinesToObjects
active_plugins/convertoutlinestoobjects.py:28
Class
DeclumpObjects
unmaintained_plugins/CellProfiler4/declumpobjects.py:50
Class
DeclumpObjects
unmaintained_plugins/CellProfiler3/declump.py:50
Class
DeclumpObjects
active_plugins/declumpobjects.py:63
Class
DistanceTransform
active_plugins/distancetransform.py:41
Class
DoGNet
unmaintained_plugins/CellProfiler3/DoGNet.py:49
Class
DoGNet
unmaintained_plugins/CellProfiler4_autoconverted/DoGNet.py:50
Class
EdgeDetection
unmaintained_plugins/CellProfiler3/edgedetection.py:19
Class
EdgeDetection
unmaintained_plugins/CellProfiler4_autoconverted/edgedetection.py:20
Class
EnforceObjectsOneToOne
active_plugins/enforceobjectsonetoone.py:68
Class
EnhancedMeasureTexture
unmaintained_plugins/CellProfiler2/enhancedmeasuretexture.py:174
Class
EnhancedMeasureTexture
unmaintained_plugins/CellProfiler3/enhancedmeasuretexture.py:173
Class
EnhancedMeasureTexture
active_plugins/enhancedmeasuretexture.py:171
Class
ExportToCellH5
unmaintained_plugins/CellProfiler3/exporttocellh5.py:38
Class
ExportToCellH5
unmaintained_plugins/CellProfiler4_autoconverted/exporttocellh5.py:38
Class
FilterObjects_StringMatch
active_plugins/filterobjects_stringmatch.py:29
Class
GammaCorrection
unmaintained_plugins/CellProfiler3/gammacorrection.py:13
Class
GammaCorrection
unmaintained_plugins/CellProfiler4_autoconverted/gammacorrection.py:14
Class
HistogramEqualization
unmaintained_plugins/CellProfiler3/histogramequalization.py:17
Class
HistogramEqualization
unmaintained_plugins/CellProfiler4_autoconverted/histogramequalization.py:19
Class
HistogramEqualization
active_plugins/histogramequalization.py:52
Class
HistogramMatching
active_plugins/histogrammatching.py:44
Class
IdentifyLinearObjects
unmaintained_plugins/CellProfiler2/identifylinearobjects.py:33
Class
IdentifyLinearObjects
unmaintained_plugins/CellProfiler3/identifylinearobjects.py:33
Class
IdentifyLinearObjects
unmaintained_plugins/CellProfiler4_autoconverted/identifylinearobjects.py:37
Class
IdentifyNucleus
unmaintained_plugins/CellProfiler3/nucleaizer.py:58
Class
IdentifyNucleus
unmaintained_plugins/CellProfiler4_autoconverted/nucleaizer.py:61
Class
IdentifyYeastCells
unmaintained_plugins/CellProfiler3/identifyyeastcells.py:203
Class
IdentifyYeastCells
unmaintained_plugins/CellProfiler4_autoconverted/identifyyeastcells.py:206
Class
ImageGradient
unmaintained_plugins/CellProfiler3/imagegradient.py:20
Class
ImageGradient
unmaintained_plugins/CellProfiler4_autoconverted/imagegradient.py:20
Class
Index
unmaintained_plugins/CellProfiler3/cellstar/utils/index.py:11
Class
LaplacianOfGaussian
unmaintained_plugins/CellProfiler3/laplacianofgaussian.py:14
Class
LaplacianOfGaussian
unmaintained_plugins/CellProfiler4_autoconverted/laplacianofgaussian.py:15
Class
MONAILabelError
Type of Inference Model Attributes: SERVER_ERROR - Server Error SESSION_EXPIRED - Session Expired U
active_plugins/runvista2d.py:494
Class
MONAILabelUtils
active_plugins/runvista2d.py:529
Class
MeasureImageFocus
unmaintained_plugins/CellProfiler3/measureimagefocus.py:28
Class
MeasureImageFocus
unmaintained_plugins/CellProfiler4_autoconverted/measureimagefocus.py:32
Class
MeasurePopulationContext
unmaintained_plugins/CellProfiler3/measure_population_context.py:54
Class
MeasurePopulationContext
unmaintained_plugins/CellProfiler4_autoconverted/measurepopulationcontext.py:57
Class
MeasureTrackQuality
unmaintained_plugins/CellProfiler3/measuretrackquality.py:86
Class
MeasureTrackQuality
unmaintained_plugins/CellProfiler4_autoconverted/measuretrackquality.py:88
Class
MeasurementTemplate
unmaintained_plugins/CellProfiler3/measureradialentropy.py:22
Class
MeasurementTemplate
unmaintained_plugins/CellProfiler4_autoconverted/measureradialentropy.py:24
Class
MergeObjects
unmaintained_plugins/CellProfiler3/mergeobjects.py:38
Class
MergeObjects
unmaintained_plugins/CellProfiler4_autoconverted/mergeobjects.py:41
Class
MockErrResponse
tests/test_runvista2d.py:28
Class
MockResponse
tests/test_runvista2d.py:19
Class
PixelShuffle
active_plugins/pixelshuffle.py:39
Class
PolarTransform
Object wrapping polar transform calculations and cached properties @type N: int @ivar N: number of points for polar transform calculatio
unmaintained_plugins/CellProfiler3/cellstar/core/polar_transform.py:18
Class
Predict
unmaintained_plugins/CellProfiler3/predict.py:67
Class
Predict
unmaintained_plugins/CellProfiler4_autoconverted/predict.py:57
Class
PyimagejError
An exception indicating that something went wrong in PyimageJ
active_plugins/runimagejscript.py:89
Class
RandomWalkerAlgorithm
unmaintained_plugins/CellProfiler3/randomwalkeralgorithm.py:21
Class
RandomWalkerAlgorithm
unmaintained_plugins/CellProfiler4_autoconverted/randomwalkeralgorithm.py:23
Class
RescaleMeanSD
unmaintained_plugins/CellProfiler3/rescale_mean_sd.py:83
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