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hub / github.com/CellProfiler/CellProfiler-plugins / types & classes

Types & classes129 in github.com/CellProfiler/CellProfiler-plugins

↓ 15 callersClassMONAILabelClientException
MONAILabel Client Exception
active_plugins/runvista2d.py:509
↓ 4 callersClassImageRepo
After initialization with input image it calculates on demand intermediate images such as foreground, background mask, and others.
unmaintained_plugins/CellProfiler3/cellstar/core/image_repo.py:13
↓ 4 callersClassSeed
Object of a seed. @ivar x: x coordinate of seed @ivar y: y coordinate of seed @ivar origin: where seed comes from ('content' or 'back
unmaintained_plugins/CellProfiler3/cellstar/core/seed.py:11
↓ 3 callersClassPoint
@ivar x: x coordinate of point @ivar y: y coordinate of point
unmaintained_plugins/CellProfiler3/cellstar/core/point.py:11
↓ 2 callersClassAutoFitterThread
unmaintained_plugins/CellProfiler3/identifyyeastcells.py:1108
↓ 2 callersClassAutoFitterThread
unmaintained_plugins/CellProfiler4_autoconverted/identifyyeastcells.py:1111
↓ 2 callersClassOptimisationBounds
unmaintained_plugins/CellProfiler3/cellstar/parameter_fitting/pf_auto_params.py:28
↓ 2 callersClassPFRankSnake
unmaintained_plugins/CellProfiler3/cellstar/parameter_fitting/pf_rank_snake.py:18
↓ 2 callersClassPFSnake
unmaintained_plugins/CellProfiler3/cellstar/parameter_fitting/pf_snake.py:23
↓ 2 callersClassQueueManager
active_plugins/cpij/server.py:68
↓ 2 callersClassRunVISTA2D
active_plugins/runvista2d.py:709
↓ 2 callersClassSegmentation
unmaintained_plugins/CellProfiler3/cellstar/segmentation.py:26
↓ 2 callersClassSnakeFilter
Order snakes based on their ranking and checks them for violating other constraints. Discard snakes that overlap with already approved ones.
unmaintained_plugins/CellProfiler3/cellstar/core/snake_filter.py:16
↓ 1 callersClassBoolean
A helper setting for boolean values, converting 0 to False and any other number to True
active_plugins/cpij/server.py:94
↓ 1 callersClassCharacter
A Setting for text entries of size one
active_plugins/cpij/server.py:77
↓ 1 callersClassDefaultCoordinate
Override for the Coordinate setting to allow negative defaults.
unmaintained_plugins/CellProfiler3/activecontourmodel.py:29
↓ 1 callersClassDefaultCoordinate
Override for the Coordinate setting to allow negative defaults.
unmaintained_plugins/CellProfiler4_autoconverted/activecontourmodel.py:31
↓ 1 callersClassGTSnake
unmaintained_plugins/CellProfiler3/cellstar/parameter_fitting/pf_snake.py:122
↓ 1 callersClassMONAILabelClient
Basic MONAILabel Client to invoke infer/train APIs over http/https
active_plugins/runvista2d.py:69
↓ 1 callersClassQueueManager
active_plugins/cpij/bridge.py:8
↓ 1 callersClassSeedGrid
unmaintained_plugins/CellProfiler3/cellstar/core/seeder.py:287
↓ 1 callersClassSeeder
Find places for seeds based on images and previously found snakes.
unmaintained_plugins/CellProfiler3/cellstar/core/seeder.py:14
ClassActiveContourModel
unmaintained_plugins/CellProfiler3/activecontourmodel.py:47
ClassActiveContourModel
unmaintained_plugins/CellProfiler4_autoconverted/activecontourmodel.py:49
ClassAddNoise
active_plugins/addnoise.py:40
ClassBlobDetection
unmaintained_plugins/CellProfiler3/blobdetection.py:32
ClassBlobDetection
unmaintained_plugins/CellProfiler4_autoconverted/blobdetection.py:35
ClassBoxObjects
active_plugins/boxobjects.py:84
ClassCalculateHistogram
unmaintained_plugins/CellProfiler2/calculatehistogram.py:45
ClassCalculateHistogram
unmaintained_plugins/CellProfiler3/calculatehistogram.py:45
ClassCalculateHistogram
unmaintained_plugins/CellProfiler4_autoconverted/calculatehistogram.py:46
ClassCalculateMoments
unmaintained_plugins/CellProfiler2/calculatemoments.py:105
ClassCalculateMoments
unmaintained_plugins/CellProfiler3/calculatemoments.py:105
ClassCalculateMoments
unmaintained_plugins/CellProfiler4_autoconverted/calculatemoments.py:110
ClassCalculateMoments
active_plugins/calculatemoments.py:119
ClassCallBarcodes
unmaintained_plugins/CellProfiler3/callbarcodes.py:142
ClassCallBarcodes
active_plugins/callbarcodes.py:104
ClassClassifyPixelsUnet
unmaintained_plugins/CellProfiler3/classifypixelsunet.py:99
ClassClassifyPixelsUnet
unmaintained_plugins/CellProfiler4_autoconverted/classifypixelsunet.py:99
ClassCompensateColors
unmaintained_plugins/CellProfiler3/compensatecolors.py:88
ClassCompensateColors
active_plugins/compensatecolors.py:65
ClassConstrainObjects
unmaintained_plugins/CellProfiler3/constrainobjects.py:35
ClassConstrainObjects
unmaintained_plugins/CellProfiler4_autoconverted/constrainobjects.py:38
ClassConvertOutlinesToObjects
unmaintained_plugins/CellProfiler3/convertoutlinestoobjects.py:28
ClassConvertOutlinesToObjects
active_plugins/convertoutlinestoobjects.py:28
ClassDeclumpObjects
unmaintained_plugins/CellProfiler4/declumpobjects.py:50
ClassDeclumpObjects
unmaintained_plugins/CellProfiler3/declump.py:50
ClassDeclumpObjects
active_plugins/declumpobjects.py:63
ClassDistanceTransform
active_plugins/distancetransform.py:41
ClassDoGNet
unmaintained_plugins/CellProfiler3/DoGNet.py:49
ClassDoGNet
unmaintained_plugins/CellProfiler4_autoconverted/DoGNet.py:50
ClassEdgeDetection
unmaintained_plugins/CellProfiler3/edgedetection.py:19
ClassEdgeDetection
unmaintained_plugins/CellProfiler4_autoconverted/edgedetection.py:20
ClassEnforceObjectsOneToOne
active_plugins/enforceobjectsonetoone.py:68
ClassEnhancedMeasureTexture
unmaintained_plugins/CellProfiler2/enhancedmeasuretexture.py:174
ClassEnhancedMeasureTexture
unmaintained_plugins/CellProfiler3/enhancedmeasuretexture.py:173
ClassEnhancedMeasureTexture
active_plugins/enhancedmeasuretexture.py:171
ClassExportToCellH5
unmaintained_plugins/CellProfiler3/exporttocellh5.py:38
ClassExportToCellH5
unmaintained_plugins/CellProfiler4_autoconverted/exporttocellh5.py:38
ClassFilterObjects_StringMatch
active_plugins/filterobjects_stringmatch.py:29
ClassGammaCorrection
unmaintained_plugins/CellProfiler3/gammacorrection.py:13
ClassGammaCorrection
unmaintained_plugins/CellProfiler4_autoconverted/gammacorrection.py:14
ClassHistogramEqualization
unmaintained_plugins/CellProfiler3/histogramequalization.py:17
ClassHistogramEqualization
unmaintained_plugins/CellProfiler4_autoconverted/histogramequalization.py:19
ClassHistogramEqualization
active_plugins/histogramequalization.py:52
ClassHistogramMatching
active_plugins/histogrammatching.py:44
ClassIdentifyLinearObjects
unmaintained_plugins/CellProfiler2/identifylinearobjects.py:33
ClassIdentifyLinearObjects
unmaintained_plugins/CellProfiler3/identifylinearobjects.py:33
ClassIdentifyLinearObjects
unmaintained_plugins/CellProfiler4_autoconverted/identifylinearobjects.py:37
ClassIdentifyNucleus
unmaintained_plugins/CellProfiler3/nucleaizer.py:58
ClassIdentifyNucleus
unmaintained_plugins/CellProfiler4_autoconverted/nucleaizer.py:61
ClassIdentifyYeastCells
unmaintained_plugins/CellProfiler3/identifyyeastcells.py:203
ClassIdentifyYeastCells
unmaintained_plugins/CellProfiler4_autoconverted/identifyyeastcells.py:206
ClassImageGradient
unmaintained_plugins/CellProfiler3/imagegradient.py:20
ClassImageGradient
unmaintained_plugins/CellProfiler4_autoconverted/imagegradient.py:20
ClassIndex
unmaintained_plugins/CellProfiler3/cellstar/utils/index.py:11
ClassLaplacianOfGaussian
unmaintained_plugins/CellProfiler3/laplacianofgaussian.py:14
ClassLaplacianOfGaussian
unmaintained_plugins/CellProfiler4_autoconverted/laplacianofgaussian.py:15
ClassMONAILabelError
Type of Inference Model Attributes: SERVER_ERROR - Server Error SESSION_EXPIRED - Session Expired U
active_plugins/runvista2d.py:494
ClassMONAILabelUtils
active_plugins/runvista2d.py:529
ClassMeasureImageFocus
unmaintained_plugins/CellProfiler3/measureimagefocus.py:28
ClassMeasureImageFocus
unmaintained_plugins/CellProfiler4_autoconverted/measureimagefocus.py:32
ClassMeasurePopulationContext
unmaintained_plugins/CellProfiler3/measure_population_context.py:54
ClassMeasurePopulationContext
unmaintained_plugins/CellProfiler4_autoconverted/measurepopulationcontext.py:57
ClassMeasureTrackQuality
unmaintained_plugins/CellProfiler3/measuretrackquality.py:86
ClassMeasureTrackQuality
unmaintained_plugins/CellProfiler4_autoconverted/measuretrackquality.py:88
ClassMeasurementTemplate
unmaintained_plugins/CellProfiler3/measureradialentropy.py:22
ClassMeasurementTemplate
unmaintained_plugins/CellProfiler4_autoconverted/measureradialentropy.py:24
ClassMergeObjects
unmaintained_plugins/CellProfiler3/mergeobjects.py:38
ClassMergeObjects
unmaintained_plugins/CellProfiler4_autoconverted/mergeobjects.py:41
ClassMockErrResponse
tests/test_runvista2d.py:28
ClassMockResponse
tests/test_runvista2d.py:19
ClassPixelShuffle
active_plugins/pixelshuffle.py:39
ClassPolarTransform
Object wrapping polar transform calculations and cached properties @type N: int @ivar N: number of points for polar transform calculatio
unmaintained_plugins/CellProfiler3/cellstar/core/polar_transform.py:18
ClassPredict
unmaintained_plugins/CellProfiler3/predict.py:67
ClassPredict
unmaintained_plugins/CellProfiler4_autoconverted/predict.py:57
ClassPyimagejError
An exception indicating that something went wrong in PyimageJ
active_plugins/runimagejscript.py:89
ClassRandomWalkerAlgorithm
unmaintained_plugins/CellProfiler3/randomwalkeralgorithm.py:21
ClassRandomWalkerAlgorithm
unmaintained_plugins/CellProfiler4_autoconverted/randomwalkeralgorithm.py:23
ClassRescaleMeanSD
unmaintained_plugins/CellProfiler3/rescale_mean_sd.py:83
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