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github.com/CellProfiler/CellProfiler-plugins @main

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1,795 symbols 4,286 edges 154 files 468 documented · 26%

What it actually does AI analysis from the code graph — generated when you open this

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Core symbols most depended-on inside this repo

add_measurement

called by 77

active_plugins/callbarcodes.py

run

called by 47

unmaintained_plugins/CellProfiler3/DoGNet.py

add_objects

called by 28

unmaintained_plugins/CellProfiler3/exporttocellh5.py

bytes_to_str

called by 28

active_plugins/runvista2d.py

get

called by 26

unmaintained_plugins/CellProfiler3/cellstar/core/seeder.py

info

called by 20

active_plugins/runvista2d.py

get_value

called by 17

active_plugins/cpij/server.py

update

called by 16

unmaintained_plugins/CellProfiler3/identifyyeastcells.py

Shape

Method 1,275

Function 391

Class 129

Languages

Python100%

Modules by API surface

unmaintained_plugins/CellProfiler4_autoconverted/identifyyeastcells.py50 symbols

unmaintained_plugins/CellProfiler3/identifyyeastcells.py50 symbols

active_plugins/runvista2d.py44 symbols

unmaintained_plugins/CellProfiler3/enhancedmeasuretexture.py33 symbols

unmaintained_plugins/CellProfiler2/enhancedmeasuretexture.py33 symbols

active_plugins/enhancedmeasuretexture.py33 symbols

unmaintained_plugins/CellProfiler4_autoconverted/spectralanalysis.py31 symbols

unmaintained_plugins/CellProfiler3/spectralanalysis.py31 symbols

unmaintained_tests/test_identifyyeastcells.py28 symbols

unmaintained_plugins/CellProfiler3/cellstar/core/image_repo.py27 symbols

unmaintained_plugins/CellProfiler4_autoconverted/testallthresholds.py26 symbols

unmaintained_plugins/CellProfiler3/thresh_all.py26 symbols

For agents

$ claude mcp add CellProfiler-plugins \
  -- python -m otcore.mcp_server <graph>

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