hub / github.com/CellProfiler/CellProfiler-plugins

github.com/CellProfiler/CellProfiler-plugins @main

1,795 symbols 4,286 edges 154 files 468 documented · 26% ● updated 4d agov1.0.0rc1 · 2023-06-02★ 7724 open issues

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⨍ Functions 1,666◇ Types & classes 129

What it actually does AI analysis from the code graph — generated when you open this

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Core symbols most depended-on inside this repo

↓ 26 filesCallBarcodes

active_plugins/callbarcodes.py

↓ 11 filesSeedGrid

unmaintained_plugins/CellProfiler3/cellstar/core/seeder.py

↓ 5 filesSnake

Contour representation of snake along with all its properties. @ivar in_polygon : cropped array representation of contour @ivar …

unmaintained_plugins/CellProfiler3/cellstar/core/snake.py

↓ 5 filesImageRepo

After initialization with input image it calculates on demand intermediate images such as foreground, background mask, and others.

unmaintained_plugins/CellProfiler3/cellstar/core/image_repo.py

↓ 5 filesMONAILabelClient

Basic MONAILabel Client to invoke infer/train APIs over http/https

active_plugins/runvista2d.py

↓ 4 filesPolarTransform

Object wrapping polar transform calculations and cached properties @type N: int @ivar N: number of points for polar transform …

unmaintained_plugins/CellProfiler3/cellstar/core/polar_transform.py

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Shape

Method 1,275

Function 391

Class 129

Languages

Python100%

Modules by API surface

unmaintained_plugins/CellProfiler4_autoconverted/identifyyeastcells.py50 symbols

unmaintained_plugins/CellProfiler3/identifyyeastcells.py50 symbols

active_plugins/runvista2d.py44 symbols

unmaintained_plugins/CellProfiler3/enhancedmeasuretexture.py33 symbols

unmaintained_plugins/CellProfiler2/enhancedmeasuretexture.py33 symbols

active_plugins/enhancedmeasuretexture.py33 symbols

unmaintained_plugins/CellProfiler4_autoconverted/spectralanalysis.py31 symbols

unmaintained_plugins/CellProfiler3/spectralanalysis.py31 symbols

unmaintained_tests/test_identifyyeastcells.py28 symbols

unmaintained_plugins/CellProfiler3/cellstar/core/image_repo.py27 symbols

unmaintained_plugins/CellProfiler4_autoconverted/testallthresholds.py26 symbols

unmaintained_plugins/CellProfiler3/thresh_all.py26 symbols

For agents

$ claude mcp add CellProfiler-plugins \
  -- python -m otcore.mcp_server <graph>

⬇ download graph artifact