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github.com/CellProfiler/CellProfiler-plugins
/ functions
Functions
1,666 in github.com/CellProfiler/CellProfiler-plugins
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Functions
1,666
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Types & classes
129
Method
create_settings
(self)
unmaintained_plugins/CellProfiler3/gammacorrection.py:18
Method
create_settings
(self)
unmaintained_plugins/CellProfiler3/histogramequalization.py:22
Method
create_settings
Create the settings for the module Create the settings for the module during initialization.
unmaintained_plugins/CellProfiler3/identifylinearobjects.py:38
Method
create_settings
(self)
unmaintained_plugins/CellProfiler3/constrainobjects.py:42
Method
create_settings
(self)
unmaintained_plugins/CellProfiler3/callbarcodes.py:160
Method
create_settings
(self)
unmaintained_plugins/CellProfiler3/declump.py:57
Method
create_settings
(self)
unmaintained_plugins/CellProfiler3/mergeobjects.py:45
Method
create_settings
(self)
unmaintained_plugins/CellProfiler3/rescale_mode_percentile.py:107
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/DoGNet.py:55
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/save16bitpngs.py:105
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/predict.py:62
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/nucleaizer.py:68
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/measurepopulationcontext.py:62
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/randomwalkeralgorithm.py:28
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/imagegradient.py:25
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/seedobjects.py:58
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/measureimagefocus.py:39
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/identifyyeastcells.py:215
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/transforms.py:108
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/spectralanalysis.py:31
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/activecontourmodel.py:54
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/blobdetection.py:42
Method
create_settings
Create the settings for the module at startup.
unmaintained_plugins/CellProfiler4_autoconverted/calculatehistogram.py:52
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/measuretrackquality.py:113
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/rescalemodepercentile.py:108
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/shollanalysis.py:145
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/measureradialentropy.py:30
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/edgedetection.py:27
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/laplacianofgaussian.py:20
Method
create_settings
Create the settings for the ExportToCellH5 module
unmaintained_plugins/CellProfiler4_autoconverted/exporttocellh5.py:65
Method
create_settings
Create the settings for the module at startup.
unmaintained_plugins/CellProfiler4_autoconverted/calculatemoments.py:116
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/rescalemeansd.py:107
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/tophattransform.py:25
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/runimagej.py:79
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/gammacorrection.py:19
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/histogramequalization.py:24
Method
create_settings
Create the settings for the module Create the settings for the module during initialization.
unmaintained_plugins/CellProfiler4_autoconverted/identifylinearobjects.py:42
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/constrainobjects.py:45
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/mergeobjects.py:48
Method
create_settings
(self)
unmaintained_plugins/CellProfiler4_autoconverted/testallthresholds.py:116
Method
create_settings
(self)
active_plugins/declumpobjects.py:70
Method
create_settings
Create the settings for the module at startup. The module allows for an unlimited number of measured objects, each of which has an en
active_plugins/enhancedmeasuretexture.py:177
Method
create_settings
(self)
active_plugins/runstardist.py:94
Method
create_settings
(self)
active_plugins/runvista2d.py:720
Method
create_settings
Make settings here (and set the module name)
active_plugins/addnoise.py:45
Method
create_settings
(self)
active_plugins/boxobjects.py:90
Method
create_settings
(self)
active_plugins/filterobjects_stringmatch.py:34
Method
create_settings
(self)
active_plugins/convertoutlinestoobjects.py:35
Method
create_settings
(self)
active_plugins/variancetransform.py:45
Method
create_settings
(self)
active_plugins/distancetransform.py:46
Method
create_settings
(self)
active_plugins/runimagejscript.py:142
Method
create_settings
(self)
active_plugins/enforceobjectsonetoone.py:73
Method
create_settings
(self)
active_plugins/runcellpose.py:133
Method
create_settings
(self)
active_plugins/compensatecolors.py:71
Method
create_settings
Create the settings for the module at startup.
active_plugins/calculatemoments.py:125
Method
create_settings
(self)
active_plugins/histogrammatching.py:49
Method
create_settings
(self)
active_plugins/histogramequalization.py:57
Method
create_settings
(self)
active_plugins/runomnipose.py:99
Method
create_settings
(self)
active_plugins/runilastik.py:81
Method
create_settings
(self)
active_plugins/callbarcodes.py:110
Method
csv_path
The path and file name of the CSV file to be loaded
unmaintained_plugins/CellProfiler3/callbarcodes.py:320
Method
csv_path
The path and file name of the CSV file to be loaded
active_plugins/callbarcodes.py:454
Method
cut_rotate
(start, step)
unmaintained_plugins/CellProfiler3/cellstar/core/snake.py:222
Method
darker
(self)
unmaintained_plugins/CellProfiler3/cellstar/core/image_repo.py:45
Method
darker_original
(self)
unmaintained_plugins/CellProfiler3/cellstar/core/image_repo.py:52
Method
datastore
(self)
active_plugins/runvista2d.py:315
Method
decoded_segmentation_precision_value
(self)
unmaintained_plugins/CellProfiler3/identifyyeastcells.py:620
Method
decoded_segmentation_precision_value
(self)
unmaintained_plugins/CellProfiler4_autoconverted/identifyyeastcells.py:623
Method
display
(self, workspace)
unmaintained_plugins/CellProfiler2/enhancedmeasuretexture.py:551
Method
display
(self, workspace)
unmaintained_plugins/CellProfiler2/calculatehistogram.py:279
Method
display
(self, workspace)
unmaintained_plugins/CellProfiler2/transform.py:331
Method
display
(self, workspace)
unmaintained_plugins/CellProfiler2/calculatemoments.py:297
Method
display
Show an informative display
unmaintained_plugins/CellProfiler2/identifylinearobjects.py:297
Method
display
(self, workspace, figure)
unmaintained_plugins/CellProfiler3/DoGNet.py:128
Method
display
(self, workspace)
unmaintained_plugins/CellProfiler3/enhancedmeasuretexture.py:550
Method
display
(self, workspace, figure)
unmaintained_plugins/CellProfiler3/measureimagefocus.py:48
Method
display
(self, workspace, figure)
unmaintained_plugins/CellProfiler3/measure_population_context.py:230
Method
display
(self, workspace, figure)
unmaintained_plugins/CellProfiler3/blobdetection.py:409
Method
display
(self, workspace)
unmaintained_plugins/CellProfiler3/calculatehistogram.py:279
Method
display
(self, workspace, figure=None)
unmaintained_plugins/CellProfiler3/shollanalysis.py:231
Method
display
(self, workspace, figure=None)
unmaintained_plugins/CellProfiler3/measureradialentropy.py:108
Method
display
(self, workspace)
unmaintained_plugins/CellProfiler3/transform.py:331
Method
display
(self, workspace, figure)
unmaintained_plugins/CellProfiler3/thresh_all.py:455
Method
display
(self, workspace)
unmaintained_plugins/CellProfiler3/calculatemoments.py:297
Method
display
(self, workspace, figure)
unmaintained_plugins/CellProfiler3/runimagej.py:107
Method
display
Show an informative display
unmaintained_plugins/CellProfiler3/identifylinearobjects.py:297
Method
display
(self, workspace, figure)
unmaintained_plugins/CellProfiler3/constrainobjects.py:170
Method
display
(self, workspace, figure)
unmaintained_plugins/CellProfiler3/callbarcodes.py:452
Method
display
(self, workspace, figure)
unmaintained_plugins/CellProfiler4_autoconverted/DoGNet.py:129
Method
display
(self, workspace, figure)
unmaintained_plugins/CellProfiler4_autoconverted/measurepopulationcontext.py:233
Method
display
(self, workspace, figure)
unmaintained_plugins/CellProfiler4_autoconverted/measureimagefocus.py:52
Method
display
(self, workspace)
unmaintained_plugins/CellProfiler4_autoconverted/transforms.py:332
Method
display
(self, workspace, figure)
unmaintained_plugins/CellProfiler4_autoconverted/blobdetection.py:412
Method
display
(self, workspace)
unmaintained_plugins/CellProfiler4_autoconverted/calculatehistogram.py:280
Method
display
(self, workspace, figure=None)
unmaintained_plugins/CellProfiler4_autoconverted/shollanalysis.py:234
Method
display
(self, workspace, figure=None)
unmaintained_plugins/CellProfiler4_autoconverted/measureradialentropy.py:110
Method
display
(self, workspace)
unmaintained_plugins/CellProfiler4_autoconverted/calculatemoments.py:302
Method
display
(self, workspace, figure)
unmaintained_plugins/CellProfiler4_autoconverted/runimagej.py:109
Method
display
Show an informative display
unmaintained_plugins/CellProfiler4_autoconverted/identifylinearobjects.py:299
Method
display
(self, workspace, figure)
unmaintained_plugins/CellProfiler4_autoconverted/constrainobjects.py:173
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