Return the whole measurement name

Use PyImageJ to read header text from an ImageJ script and extract inputs/outputs, which are then converted to CellProfiler settings

Get slices to use for a pair of arrays, given an offset offset - offset to be applied to the second array An offset imposes border c

Get slices to use for a pair of arrays, given an offset offset - offset to be applied to the second array An offset imposes border c

Get slices to use for a pair of arrays, given an offset offset - offset to be applied to the second array An offset imposes border c

Grow the snake from seed. @type polar_transform: cellstar.core.vectorized.polar_transform.PolarTransform @type size_weight: f

Adjust an image so that its cumulative histogram matches that of another. The adjustment is applied separately for each channel. its values

Open the csv file or URL, returning a file descriptor

sizeWeight is one number (mean of the future list) @type param_vector: numpy.ndarray @return:

brightnessWeight: 0.0442 +brightness on cell edges cumBrightnessWeight: 304.45 -brightness in the cell center gradientWeight: 15.482 +gra

Record the result of a measurement in the workspace's measurements

Record the result of a measurement in the workspace's measurements

Record the result of a measurement in the workspace's measurements

Resize shape for compatibility with UNet architecture Args: shape: Shape of images to be resized in format HW[D1, D2, ...] where any

Resize shape for compatibility with UNet architecture Args: shape: Shape of images to be resized in format HW[D1, D2, ...] where any

Look for any pairs that end in "_X" and "_Y" or have "_X_" and "_Y_" within them :param features:list of names :return: list

Look for any pairs that end in "_X" and "_Y" or have "_X_" and "_Y_" within them :param features:list of names :return: list

Helper method to convert ImageJ/Java values to python values that can be passed between via queues (pickled) Parameters ---------- i

Return modified source array so that the cumulative density function of its values matches the cumulative density function of the template.

Helper method to convert pythonic inputs to something that can be handled by ImageJ In particular this is necessary for image inputs which w

Helper method to send the shutdown signal to ImageJ. Intended to be called at process exit.

Python script to run when starting a new ImageJ process. All commands are initiated by adding a dictionary with a {pyimagej_key_command} entry to

Create and start a thread to run a given target Parameters ---------- target : runnable Same as threading.Thread args :

Add an histogram to the bin_groups collection can_delete - set this to False to keep from showing the "remove"

Add an histogram to the bin_groups collection can_delete - set this to False to keep from showing the "remove"

Add an histogram to the bin_groups collection can_delete - set this to False to keep from showing the "remove" b

Add an image and its settings to the list of images

Add an image to the image_groups collection can_delete - set this to False to keep from showing the "remove" but

Add an image to the image_groups collection can_delete - set this to False to keep from showing the "remove"

Add an image to the image_groups collection can_delete - set this to False to keep from showing the "remove"

Add an image to the image_groups collection can_delete - set this to False to keep from showing the "remove" but

Add an image to the image_groups collection can_delete - set this to False to keep from showing the "remove"

Add an image to the image_groups collection can_delete - set this to False to keep from showing the "remove"