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Functions24,809 in github.com/BobHanson/Jmol-SwingJS

↓ 69 callersMethodcreateMenuItem
(String caption, String command, String keyStroke, Container par, boolean disabled)
src/fr/orsay/lri/varna/views/VueMenu.java:120
↓ 69 callersMethodgetParameterValue
(String key, String def)
src/fr/orsay/lri/varna/interfaces/InterfaceParameterLoader.java:21
↓ 69 callersMethodoptParameterAsString
(int i)
src/org/jmol/script/ScriptParam.java:831
↓ 69 callersMethodsetEnabled
(boolean b)
src/jspecview/api/JSVViewPanel.java:11
↓ 68 callersMethodaddTokenToPrefix
(T token)
src/org/jmol/script/ScriptCompiler.java:263
↓ 68 callersMethodbnd
(int mouseAction, int... jmolActions)
src/org/jmol/viewer/ActionManager.java:396
↓ 68 callersMethodparseBoolean
(String s)
src/fr/orsay/lri/varna/controlers/ControleurScriptParser.java:603
↓ 67 callersFunctionKn
(a)
assets/inchi/inchi.js:83
↓ 67 callersFunctionassert
@type {function(*, string=)}
resources/_ES6/inchi-web-SwingJS.js:672
↓ 67 callersMethodisSelected
()
src/org/jmol/api/SC.java:45
↓ 67 callersMethodoutput
(T3d pt)
src/org/jmol/export/_TachyonExporter.java:126
↓ 67 callersMethodrotate
()
src/org/jmol/quantum/NMRNoeMatrix.java:593
↓ 67 callersMethodtoString
()
src/org/jmol/viewer/ActionManager.java:2312
↓ 66 callersMethodgetWidth
jQuery width() @param node @return width
src/swingjs/api/js/DOMNode.java:255
↓ 66 callersMethodsetVisible
(DOMNode node, boolean visible)
src/swingjs/api/js/DOMNode.java:213
↓ 66 callersMethodtoArray
()
src/org/jmol/script/SV.java:1796
↓ 65 callersMethodnewV
(T3d t)
src/javajs/util/V3d.java:38
↓ 65 callersMethodsort
(int dim)
src/org/jmol/bspt/Leaf.java:56
↓ 64 callersFunctionFb
(b,c)
assets/inchi/inchi.js:85
↓ 64 callersMethodrotTrans
Transforms the point parameter with this Matrix4f and places the result back into point. The fourth element of the point input parameter is assumed to
src/javajs/util/M4d.java:831
↓ 64 callersFunctionub
(d,e,f,j)
assets/inchi/inchi.js:85
↓ 63 callersMethodnext
()
src/org/jmol/modelset/BondIterator.java:30
↓ 63 callersMethodptValue
(SV x)
src/org/jmol/script/SV.java:848
↓ 63 callersMethodsetSelected
(String key, boolean b)
src/jspecview/api/JSVPopupMenu.java:12
↓ 63 callersMethodsetShapeProperty
(int shapeType, String propertyName, Object propertyValue)
src/org/jmol/script/ScriptEval.java:9824
↓ 62 callersMethodaddDirectory
Add tests for each file in a directory. @param directory Directory where the files are (relative to Jmol-datafiles) @param ext Extension
test/org/jmol/adapter/smarter/TestSmarterJmolAdapter.java:136
↓ 62 callersMethodcheckLast
(int i)
src/org/jmol/script/ScriptParam.java:1130
↓ 62 callersMethodgetSelectedIndex
(Object combo1)
src/jspecview/api/PlatformDialog.java:40
↓ 62 callersMethodisDigit
(char ch)
src/javajs/util/PT.java:901
↓ 62 callersMethodsetAtomSetName
Sets the name for the current AtomSet @param atomSetName The name to be associated with the current AtomSet
src/org/jmol/adapter/smarter/AtomSetCollection.java:910
↓ 61 callersMethodasDouble
()
src/org/jmol/script/SV.java:520
↓ 61 callersMethodgetHeight
jQuery height() @param node @return height
src/swingjs/api/js/DOMNode.java:245
↓ 61 callersMethodgetXmlAttrib
(String data, String what)
src/org/jmol/jvxl/readers/XmlReader.java:168
↓ 61 callersMethodlistAt
(Lst<Object> list, int i)
src/org/jmol/adapter/readers/pymol/PyMOLReader.java:1697
↓ 61 callersMethodmenuEnable
(SC component, boolean enable)
src/org/jmol/popup/GenericPopup.java:392
↓ 60 callersMethoddebugPrint
Debug print utility. Only prints if debug is true. @param string
src/org/jmol/export/_ObjExporter.java:129
↓ 60 callersMethodg
(String cmd)
src/javajs/export/PDFCreator.java:181
↓ 60 callersMethodgetModelUndeletedAtomsBitSet
@param modelIndex @return modifiable copy of this bitset
src/org/jmol/viewer/Viewer.java:3980
↓ 60 callersMethodnewSmilesSearch
()
test/org/jmol/smiles/TestSmilesParser.java:1281
↓ 60 callersMethodsetBits
Sets the bits from the specified {@code fromIndex} (inclusive) to the specified {@code toIndex} (exclusive) to {@code true}. @param fromIndex
src/javajs/util/BS.java:258
↓ 60 callersMethodsetBooleanProperty
(String key, boolean value)
src/org/jmol/viewer/Viewer.java:7042
↓ 60 callersMethodtoString
()
unused/janocchio/Measure.java:80
↓ 59 callersMethodaddGroup
(Group group, int groupIndex)
src/org/jmol/modelset/Chain.java:109
↓ 59 callersMethodgetMessage
()
src/fr/orsay/lri/varna/exceptions/MappingException.java:39
↓ 59 callersMethodisOneOf
(String key, String semiList)
src/javajs/util/PT.java:361
↓ 58 callersFunctiona
(a,c,d)
doc/varna/VARNA_features_files/ga.js:12
↓ 58 callersFunctiona
(a,c,d)
doc/varna/VARNA_mouse_files/ga.js:12
↓ 58 callersFunctiona
(a,c,d)
doc/varna/VARNA_specs_files/ga.js:12
↓ 58 callersFunctiona
(a,c,d)
doc/varna/VARNA_menu_files/ga.js:12
↓ 58 callersMethodaddX
(SV x)
src/org/jmol/script/ScriptMathProcessor.java:226
↓ 58 callersMethodatomExpressionAt
(int i)
src/org/jmol/scriptext/ScriptExt.java:31
↓ 58 callersMethodcheckMolecule
Check that the SMILES parsing is correct @param smiles SMILES string @param expected SMILES molecule
test/org/jmol/smiles/TestSmilesParser.java:1293
↓ 57 callersFunctionFh
(a,b,d)
assets/inchi/inchi.js:79
↓ 57 callersMethodaddXBs
(BS bs)
src/org/jmol/script/ScriptMathProcessor.java:282
↓ 57 callersMethoddecode
(String s)
src/fr/orsay/lri/varna/models/rna/ModeleBaseNucleotide.java:293
↓ 57 callersMethodf
Returns the substitution cost between v1 and v2. We use the convention that a null reference is a blank, ie. f(x, null) is the cost of deleting x and
src/fr/orsay/lri/varna/models/treealign/TreeAlignLabelDistanceAsymmetric.java:17
↓ 57 callersMethodgetActionCommand
()
src/org/jmol/api/SC.java:21
↓ 57 callersMethodgetBaseAt
Returns the base at index <code>index</code>. Indices are contiguous in the sequence over an interval <code>[0,this.getSize()-1]</code>, where <code>n
src/fr/orsay/lri/varna/models/rna/RNA.java:3826
↓ 57 callersMethodnew3
(int x, int y, int z)
src/javajs/util/P3i.java:36
↓ 57 callersMethodrunScriptQueued
(String script)
src/org/gennbo/NBODialog.java:1196
↓ 57 callersMethodsetFractionalCoordinates
(boolean TF)
src/org/jmol/adapter/smarter/AtomSetCollectionReader.java:1137
↓ 56 callersMethodaddAttrib
(Lst<String[]> attribs, String name, String value)
src/org/jmol/jvxl/data/JvxlCoder.java:499
↓ 56 callersMethoddrawLine
(double x1, double y1, double x2, double y2)
src/fr/orsay/lri/varna/models/export/VueVARNAGraphics.java:15
↓ 56 callersMethodgetSelectedItem
(Object combo)
src/jspecview/api/PlatformDialog.java:38
↓ 56 callersMethodisFloatParameter
(int index)
src/org/jmol/scriptext/ScriptExt.java:79
↓ 56 callersMethodloadShape
(int shapeID)
src/org/jmol/viewer/ShapeManager.java:128
↓ 56 callersMethodmatch
Return a bit set corresponding to a SMARTS @param smarts @return bit set matching this SMARTS @throws Exception
src/org/jmol/symmetry/CIPData.java:232
↓ 56 callersMethodsetMaximumSize
(int x)
src/org/jmol/viewer/Viewer.java:714
↓ 56 callersMethodsetName
(String string)
src/org/jmol/api/SC.java:59
↓ 55 callersMethodnewAtomSet
(boolean doSetUnitCell)
src/org/jmol/adapter/readers/xtal/GulpReader.java:174
↓ 54 callersMethoddoubleParameter
(int i)
src/org/jmol/scriptext/ScriptExt.java:67
↓ 54 callersMethodsetInfo
(String info)
src/org/jmol/adapter/readers/spartan/SpartanArchive.java:133
↓ 53 callersMethodcenterParameter
(int i)
src/org/jmol/scriptext/ScriptExt.java:59
↓ 53 callersMethodgetOtherNode
(SimpleNode a)
src/org/jmol/util/SimpleEdge.java:23
↓ 53 callersMethodgetPath
()
src/jspecview/api/JSVTreeNode.java:17
↓ 53 callersMethodgetQuotedAttribute
(String info, String name)
src/javajs/util/PT.java:369
↓ 53 callersMethodrefresh
initiate a repaint/update sequence if it has not already been requested. invoked whenever any operation causes changes that require new rendering. Th
src/org/jmol/viewer/Viewer.java:4704
↓ 53 callersMethodshowString
(String s)
src/org/jmol/scriptext/ScriptExt.java:93
↓ 53 callersFunctionzc
(b,d,e,f,g)
assets/inchi/inchi.js:80
↓ 52 callersFunctionassert
@type {function(*, string=)}
unused/inchi-web-SwingJS.js:212
↓ 52 callersMethodgetBytes
Get the 秘bytes field associated with a file, but only if the File object itself has them attached, not downloading them. @param f @return
src/swingjs/api/JSUtilI.java:148
↓ 52 callersMethodgetStartPosition
()
src/fr/orsay/lri/varna/models/templates/RNATemplate.java:1542
↓ 52 callersMethodsetF
(String name, double value)
src/org/jmol/viewer/GlobalSettings.java:793
↓ 52 callersMethodsetLocation
(int[] loc)
src/org/jmol/awtjs/swing/JDialog.java:35
↓ 51 callersMethoddoubleValue
()
src/fr/orsay/lri/varna/controlers/ControleurScriptParser.java:171
↓ 51 callersMethodgetAtomNumber
()
src/org/jmol/util/Node.java:73
↓ 51 callersMethodgetColixTranslucent3
(short colix, boolean isTranslucent,
src/org/jmol/util/C.java:392
↓ 51 callersMethodgetDouble
(int tok)
src/org/jmol/viewer/Viewer.java:6264
↓ 51 callersMethodgetModel
BE CAREFUL: FAILURE TO NULL REFERENCES TO model WILL PREVENT FINALIZATION AND CREATE A MEMORY LEAK. @return associated Model
src/org/jmol/modelset/Group.java:384
↓ 51 callersMethodhasNext
()
src/org/jmol/modelset/BondIterator.java:28
↓ 51 callersMethodhasOption
(int op)
src/fr/orsay/lri/varna/applications/VARNA.java:102
↓ 51 callersMethodnewAndSetBit
(int i)
src/org/jmol/util/BSUtil.java:35
↓ 51 callersMethodnewVsub
(T3d t1, T3d t2)
src/javajs/util/V3d.java:45
↓ 51 callersMethodparseDoubleStr
(String s)
src/org/jmol/jvxl/readers/SurfaceFileReader.java:129
↓ 50 callersMethodeBS
(BS bs)
src/org/jmol/util/Escape.java:475
↓ 50 callersMethodgetMap
()
src/org/jmol/script/SV.java:1934
↓ 49 callersMethodappendCmd
(SB s, String cmd)
src/org/jmol/shape/Shape.java:412
↓ 49 callersMethodequals
( Connection c)
src/fr/orsay/lri/varna/apps2/templateeditor/Connection.java:18
↓ 49 callersMethodgetFieldString
(byte type)
src/org/jmol/adapter/readers/cif/CifReader.java:2931
↓ 49 callersMethodnewM4
Constructs a new matrix with the same values as the Matrix4f parameter. @param m1 the source matrix @return m
src/javajs/util/M4d.java:112
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