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github.com/BobHanson/Jmol-SwingJS
/ functions
Functions
24,809 in github.com/BobHanson/Jmol-SwingJS
⨍
Functions
24,809
◇
Types & classes
1,819
↓ 5,287 callers
Method
get
Create a new GET request. These requests will have no body. Any data added via addFormPart(String, String) or its related add...Part(...) methods will
src/javajs/http/HttpClient.java:222
↓ 2,783 callers
Method
indexOf
(String s)
src/javajs/util/SB.java:218
↓ 2,530 callers
Method
put
Create a new PUT request, which is constructed as for POST.
src/javajs/http/HttpClient.java:243
↓ 1,942 callers
Method
add
(SC item)
src/org/jmol/api/SC.java:13
↓ 1,931 callers
Method
substring
(int i)
src/javajs/util/SB.java:287
↓ 1,797 callers
Method
length
()
src/org/jmol/api/GenericFileInterface.java:9
↓ 1,687 callers
Method
append
(String message)
src/org/jmol/api/js/GenericConsoleTextArea.java:11
↓ 1,422 callers
Method
equals
(Object o)
src/org/jmol/script/T.java:3924
↓ 1,394 callers
Method
size
Returns the number of bits of space actually in use by this {@code BitSet} to represent bit values. The maximum element in the set is the size - 1st e
src/javajs/util/BS.java:672
↓ 1,388 callers
Method
set
(double x, double y, double z)
src/org/jmol/util/Node.java:55
↓ 1,174 callers
Method
nextSetBit
Returns the index of the first bit that is set to {@code true} that occurs on or after the specified starting index. If no such bit exists then {@code
src/javajs/util/BS.java:411
↓ 1,167 callers
Method
$
(String string)
src/org/jmol/i18n/GT.java:205
↓ 1,077 callers
Method
append
(String s)
src/javajs/util/SB.java:64
↓ 954 callers
Method
startsWith
(byte[] test)
src/javajs/img/PngEncoder.java:334
↓ 951 callers
Method
addLast
(V v)
src/javajs/util/Lst.java:44
↓ 657 callers
Method
charAt
(int i)
src/org/jmol/script/ScriptCompiler.java:696
↓ 636 callers
Method
info
og Writes a log at INFO level. @param txt String to write.
src/org/jmol/util/Logger.java:191
↓ 575 callers
Method
isNaN
()
src/org/jmol/script/SV.java:2077
↓ 562 callers
Method
add
(JComponent btn, Object c)
src/org/jmol/awtjs/swing/JPanel.java:24
↓ 553 callers
Method
trim
(String str, String chars)
src/javajs/util/PT.java:497
↓ 489 callers
Method
size
()
src/fr/orsay/lri/varna/models/BaseSet.java:177
↓ 473 callers
Method
rd
()
src/org/jmol/api/JmolJDXMOLReader.java:17
↓ 460 callers
Method
intValue
()
src/fr/orsay/lri/varna/controlers/ControleurScriptParser.java:175
↓ 455 callers
Method
setT
Sets the value of this tuple to the value of the Tuple3d argument. @param t1 the tuple to be copied
src/javajs/util/T3d.java:92
↓ 455 callers
Method
tokAt
(int i)
src/org/jmol/scriptext/ScriptExt.java:105
↓ 412 callers
Method
rep
Does a clean ITERATIVE replace of strFrom in str with strTo. Thus, rep("Testttt", "tt","t") becomes "Test". @param str @param strFrom @param strTo @r
src/javajs/util/PT.java:388
↓ 394 callers
Method
toString
()
src/javajs/util/SB.java:193
↓ 379 callers
Method
split
proper splitting, even for Java 1.3 -- if the text ends in the run, no new line is appended. @param text @param run @return String array
src/javajs/util/PT.java:247
↓ 368 callers
Method
contains
(Object outer, Object inner)
src/swingjs/api/js/JQuery.java:9
↓ 367 callers
Method
getValue
for readers only @param x @param y @param z @param ptyz @return value[x][y][z]
src/org/jmol/jvxl/api/VertexDataServer.java:118
↓ 346 callers
Method
parseDoubleStr
(String s)
src/org/jmol/adapter/smarter/AtomSetCollectionReader.java:1990
↓ 335 callers
Method
invArg
()
src/org/jmol/scriptext/ScriptExt.java:43
↓ 326 callers
Function
Ln
(a)
assets/inchi/inchi.js:83
↓ 318 callers
Method
charAt
(int i)
src/javajs/util/SB.java:230
↓ 312 callers
Method
equals
Indicates whether some other Coordinate is equal to this one @param coord the reference coordinate @return true if the coordinates are equal,
src/jspecview/common/Coordinate.java:123
↓ 307 callers
Method
addActionListener
(Object owner)
src/org/jmol/api/SC.java:15
↓ 286 callers
Method
clear
()
src/org/jmol/api/JmolDataManager.java:43
↓ 283 callers
Method
set
Sets the bit at the specified index to {@code true}. @param bitIndex a bit index @throws IndexOutOfBoundsException if the specifie
src/javajs/util/BS.java:216
↓ 267 callers
Method
newP
(T3d t)
src/javajs/util/P3d.java:40
↓ 261 callers
Method
parseInt
(String str)
src/javajs/util/PT.java:47
↓ 260 callers
Method
push
pull one save structure onto the stack array ctx._aSaved @param ctx @return the length of the stack array after the push
src/swingjs/api/js/HTML5CanvasContext2D.java:83
↓ 258 callers
Method
error
Writes a log at ERROR level. @param txt String to write.
src/org/jmol/util/Logger.java:237
↓ 258 callers
Method
new3
(double x, double y, double z)
src/javajs/util/P3d.java:54
↓ 257 callers
Method
cardinality
Returns the number of bits set to {@code true} in this {@code BitSet}. @return the number of bits set to {@code true} in this {@code BitSet} @since 1
src/javajs/util/BS.java:512
↓ 257 callers
Method
replace
(int offs, int length, String str, AttributeSet attrs)
src/org/openscience/jmol/app/jmolpanel/console/AppConsole.java:1168
↓ 251 callers
Method
debug
Writes a log at DEBUG level. @param txt String to write.
src/org/jmol/util/Logger.java:176
↓ 249 callers
Method
addHydrogen
Adds an hydrogen @param molecule Molecule in which the hydrogen is added @param bonded Other atom to bond to
test/org/jmol/smiles/TestSmilesParser.java:1328
↓ 239 callers
Method
scale
(Mesh mesh, double newScale)
src/org/jmol/shapecgo/CGO.java:215
↓ 239 callers
Method
setText
(String entry)
src/org/jmol/api/SC.java:63
↓ 236 callers
Method
equals
(Object o)
src/fr/orsay/lri/varna/models/rna/RNA.java:4171
↓ 235 callers
Method
repaint
()
src/jspecview/api/JSVPanel.java:21
↓ 232 callers
Method
setSymbol
Sets the symbol of the atm. @param symbol Atom symbol. @return false if invalid symbol
src/org/jmol/smiles/SmilesAtom.java:320
↓ 230 callers
Method
append
(Object span)
src/swingjs/api/js/JQueryObject.java:12
↓ 224 callers
Method
addAtom
()
src/org/jmol/smiles/SmilesSearch.java:468
↓ 223 callers
Function
unexportedRuntimeFunction
(sym, isFSSybol)
resources/_ES6/inchi-web-SwingJS.js:580
↓ 219 callers
Method
replace
(int start, int end, String str)
src/javajs/util/SB.java:339
↓ 218 callers
Method
appendC
(char c)
src/javajs/util/SB.java:77
↓ 216 callers
Method
getX
()
src/org/iupac/InChIStructureProvider.java:18
↓ 207 callers
Method
sub2
Sets the value of this tuple to the vector difference of tuple t1 and t2 (this = t1 - t2). @param t1 the first tuple @param t2 the seco
src/javajs/util/T3d.java:158
↓ 201 callers
Method
lastIndexOf
(String s)
src/javajs/util/SB.java:265
↓ 200 callers
Method
esc
(String str)
src/javajs/util/PT.java:678
↓ 199 callers
Method
getTokens
(String line)
src/javajs/util/PT.java:133
↓ 198 callers
Method
doubleValue
()
src/org/jmol/script/ScriptTokenParser.java:348
↓ 196 callers
Function
Mn
(a,b)
assets/inchi/inchi.js:83
↓ 192 callers
Method
getRNA
()
src/fr/orsay/lri/varna/applications/VARNA.java:363
↓ 192 callers
Method
remove
(int i)
src/org/jmol/api/SC.java:47
↓ 192 callers
Method
setEnabled
(boolean enable)
src/org/jmol/api/SC.java:55
↓ 187 callers
Method
parseIntStr
(String s)
src/org/jmol/adapter/smarter/AtomSetCollectionReader.java:2004
↓ 186 callers
Method
round
(double number)
src/org/jmol/export/___Exporter.java:363
↓ 185 callers
Method
setB
(String name, boolean value)
src/org/jmol/viewer/GlobalSettings.java:781
↓ 179 callers
Method
getText
()
src/org/jmol/api/SC.java:37
↓ 176 callers
Method
getTokens
(String s)
src/org/jmol/adapter/readers/xml/CDXMLParser.java:713
↓ 175 callers
Method
getY
()
src/org/iupac/InChIStructureProvider.java:19
↓ 174 callers
Method
substring
(int i, int j)
src/jspecview/source/XMLParser.java:269
↓ 173 callers
Method
createBond
(SmilesAtom atom1, SmilesAtom atom2, int bondType, boolean isExplicitH)
test/org/jmol/smiles/TestSmilesParser.java:1303
↓ 169 callers
Method
appendI
(int i)
src/javajs/util/SB.java:90
↓ 168 callers
Method
getToken
(int i)
src/org/jmol/scriptext/ScriptExt.java:101
↓ 168 callers
Method
scaleAdd2
Sets the value of this tuple to the scalar multiplication of tuple t1 and then adds tuple t2 (this = s t1 + t2). @param s the scalar value @pa
src/javajs/util/T3d.java:240
↓ 167 callers
Method
paramAsStr
(int i)
src/org/jmol/scriptext/ScriptExt.java:55
↓ 166 callers
Method
normalize
Normalizes this vector in place. Was in Vector3f; more useful here, though.
src/javajs/util/T3d.java:293
↓ 164 callers
Method
get_listeBases
()
src/fr/orsay/lri/varna/models/rna/RNA.java:2811
↓ 161 callers
Method
or
Performs a logical <b>OR</b> of this bit set with the bit set argument. This bit set is modified so that a bit in it has the value {@code true} if and
src/javajs/util/BS.java:551
↓ 160 callers
Method
setPreferredSize
(int width, int height)
src/jspecview/api/PlatformDialog.java:19
↓ 158 callers
Method
join
(String[] s, char c, int i0)
src/javajs/util/PT.java:729
↓ 155 callers
Method
get
Returns the value of the bit with the specified index. The value is {@code true} if the bit with the index {@code bitIndex} is currently set in this {
src/javajs/util/BS.java:378
↓ 154 callers
Method
setColor
(Color c)
src/fr/orsay/lri/varna/models/export/VueVARNAGraphics.java:13
↓ 150 callers
Method
parseDouble
(String str)
src/javajs/util/PT.java:1429
↓ 147 callers
Method
eP
must be its own, because of the possibility of being null @param xyz @return {x y z}
src/org/jmol/util/Escape.java:76
↓ 144 callers
Method
set
(Viewer vwr, OC out, Object[] data)
src/org/jmol/api/JmolWriter.java:10
↓ 141 callers
Method
getElementStructure
Gets this InterfaceBase associated structure element. @return this InterfaceBase associated structure element.
src/fr/orsay/lri/varna/models/rna/ModeleBase.java:161
↓ 140 callers
Method
setBorder
()
src/fr/orsay/lri/varna/views/VueUI.java:1424
↓ 138 callers
Method
copy
(BS bs)
src/org/jmol/util/BSUtil.java:76
↓ 135 callers
Method
getXVal
Returns the x value of the coordinate @return the x value of the coordinate
src/jspecview/common/Coordinate.java:72
↓ 134 callers
Method
sValue
(T x)
src/org/jmol/script/SV.java:680
↓ 132 callers
Function
Tn
(b,d,e)
assets/inchi/inchi.js:83
↓ 132 callers
Method
cross
Sets this tuple to be the vector cross product of vectors v1 and v2. @param v1 the first vector @param v2 the second vector
src/javajs/util/T3d.java:310
↓ 129 callers
Method
isEmpty
()
src/org/jmol/adapter/writers/QCJSONWriter.java:592
↓ 126 callers
Method
floatParameter
(int i)
src/org/jmol/scriptext/ScriptExt.java:63
↓ 126 callers
Method
getSource
(String filePath, BufferedReader br)
src/jspecview/api/SourceReader.java:9
↓ 124 callers
Method
o
(String s, Object o)
src/org/jmol/i18n/GT.java:209
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