Close any open streams.

Returns the view associated with user interactions @return A view associated with user interactions

Returns the distance between this point and point p1. @param p1 the other point @return the distance between these two points

Sets all of the bits in this BitSet to {@code false}. @since 1.4

Returns the y value of the coordinate @return the y value of the coordinate

Performs a logical <b>AND</b> of this target bit set with the argument bit set. This bit set is modified so that each bit in it has the value {@code t

Set a property of the the HTML5 video element using jsvideo[key] = value. Numbers and Booleans will be unboxed. @param jsvideo the HTML5 video elemen

Get the currently selected atoms. Note that for performance, returns the actual bsSelection rather then a copy unless SUBSET has been issued. (Which

sets current color from colix color index @param colix the color index @return true or false if this is the right pass

@param name @param vwr not used - may be null @param state @return instance

Sets auxiliary information for the AtomSet @param key The key for the property @param value The value to be associated with the key

@param sym "C" or "14C" or "all" @return list of double[isotopeNumber,g,Q] if no isotope number is given, or a single double[] if it does.

Compares this object against the specified object. The result is {@code true} if and only if the argument is not {@code null} and is a {@code Bitset}

Writes a log at ERROR level. @param txt String to write.

Computes the square of the distance between this point and point p1. @param p1 the other point @return the square of distance between these tw

Writes a log at WARN level. @param txt String to write.

Creates a bit set whose initial size is large enough to explicitly represent bits with indices in the range {@code 0} through {@code nbits-1}. All bit

Returns current modification status @return current modification status

Sets the value of this tuple to the vector sum of tuples t1 and t2. @param t1 the first tuple @param t2 the second tuple

Get a property using jsvideo[key], boxing number as Double and boolean as Boolean. @param jsvideo the HTML5 video element @param key @return value o

Returns the current RNA model @return Current RNA model