Return the last dinucleotide. */

Return the first dinucleotide. */

Return the number of bits in this sequence. */

Checks that the PipeMux is empty. */

Print an error message and exit if stream is not good. */

Return a null-terminated sequence of characters. */

* print error message and exit */

Return whether this stream is at end-of-file. */

Return the string representation of this sequence. */

Return the terminal nucleotide. */

Return the base at the specified index. */

Search for a matching substring of the query at least k long. * @return the longest match and the number of matches */

Get pointer to raw char array for k-mer */

Return true if this container is empty. */

Return the first nucleotide. */

Return the next character of this stream. */

Return the size of the string not counting the sentinel. */

Return the size of this feature. */

Return whether this ContigNode is ambiguous. */

Return the number of contigs. */

Remove the specified edges. */

Allows a pop when the pipe is empty to signal the pipe is * closed. */

Return the reverse complement of the specified k-mer. */

Return the size of the bit array. */

Return the properties of the specified vertex, unless u is * ambiguous, in which case return the length of the ambiguous * sequence. */

Resize the bloom filter (wipes the current data) */

Return the SI representation of n. */

Block until all processes have reached this routine. */

Return the vertex index. */

Return the mapping of the specified sequence. */

Return the orientation of this vertex. */

Bitwise right rotate. Normally this will compile to a single instruction, especially if the shift is a manifest constant.

Block until all processes have reached this routine. * @return the sum of count from all processors */

Return true if this collection is empty. */

* returnes the representative of the equivalence class */

Lock this dictionary. No further elements may be added. */

Return the number of branches in this group. */

Return the contig index as a ContigID. */

Return the contig index. */

* Return true if the element with the given hash values * has count >= levels. */

Return true if failbit or badbit of stream is set. */

iterator pointing to one past last element */

Return true if this sequence is a palindrome. */

Return the population count, i.e. the number of set bits. */

SIDE EFFECT, releases original memory held by string */

Read a single record. */

Add the element x at the end. */

Send a control message to every other process. */

Return true if the specified sequence is deleted. */

Return the hash value of this object. */

* Get hash values for current k-mer. * * @param hashes array for returned hash values */