MCPcopy Create free account
hub / github.com/BirolLab/abyss / get

Function get

MergePaths/MergeContigs.cpp:206–210  ·  view source on GitHub ↗

Return the properties of the specified vertex, unless u is * ambiguous, in which case return the length of the ambiguous * sequence. */

Source from the content-addressed store, hash-verified

204 * sequence.
205 */
206static inline ContigProperties
207get(vertex_bundle_t, const Graph& g, ContigNode u)
208{
209 return u.ambiguous() ? ContigProperties(u.length() + opt::k - 1, 0) : g[u];
210}
211
212/** Append the sequence of contig v to seq. */
213static void

Callers 15

removeRepeatsFunction · 0.70
mergePathsFunction · 0.70
mergePathFunction · 0.70
extendPathsFunction · 0.70
identifySubsumedPathsFunction · 0.70
readPathsFunction · 0.70
buildPathGraphFunction · 0.70
mainFunction · 0.70
mergeContigsFunction · 0.70
pathToCommentFunction · 0.70
markRemovedContigsFunction · 0.70
mainFunction · 0.70

Calls 3

ContigPropertiesClass · 0.85
ambiguousMethod · 0.80
lengthMethod · 0.45

Tested by

no test coverage detected