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Functions2,432 in github.com/rambaut/figtree

↓ 2 callersMethodexportGraphics
(GraphicFormat format, JComponent comp, OutputStream stream)
src/figtree/application/FigTreeFrame.java:1241
↓ 2 callersMethodfireTreeChanged
()
src/figtree/treeviewer/DefaultTreeViewer.java:785
↓ 2 callersMethodfirstIndexOf
(boolean[] s1)
src/figtree/treeviewer/Parsimony.java:253
↓ 2 callersMethodflattenName
(String name)
src/figtree/treeviewer/AttributeColourController.java:309
↓ 2 callersMethodgetAnnotationName
()
src/figtree/treeviewer/annotations/SelectAnnotationDialog.java:86
↓ 2 callersMethodgetAttributeNames
(List<String> attributeNames, Collection<? extends Tree> trees, Label
src/figtree/treeviewer/painters/AttributeComboHelper.java:147
↓ 2 callersMethodgetAttributes
()
src/figtree/panel/SimpleLabelPainter.java:320
↓ 2 callersMethodgetBranchLabelPath
(Node node)
src/figtree/treeviewer/treelayouts/TreeLayoutCache.java:94
↓ 2 callersMethodgetBranchLabelPathMap
()
src/figtree/treeviewer/treelayouts/TreeLayoutCache.java:98
↓ 2 callersMethodgetBrightnessLower
()
src/figtree/treeviewer/decorators/HSBDiscreteColourDecorator.java:245
↓ 2 callersMethodgetBrightnessUpper
()
src/figtree/treeviewer/decorators/HSBDiscreteColourDecorator.java:241
↓ 2 callersMethodgetBundledJreErr
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Msg.java:74
↓ 2 callersMethodgetCode
()
src/figtree/treeviewer/annotations/AnnotationDefinition.java:77
↓ 2 callersMethodgetColor2
()
src/figtree/treeviewer/decorators/InterpolatingColourDecorator.java:94
↓ 2 callersMethodgetColor3
()
src/figtree/treeviewer/decorators/InterpolatingColourDecorator.java:101
↓ 2 callersMethodgetColorAttribute
(Object value)
src/figtree/treeviewer/decorators/AttributableDecorator.java:174
↓ 2 callersMethodgetConsoleLog
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/Log.java:52
↓ 2 callersMethodgetCurrentTree
()
src/figtree/treeviewer/TreeViewer.java:53
↓ 2 callersMethodgetDecorator
()
src/figtree/treeviewer/ContinuousColourScaleDialog.java:218
↓ 2 callersMethodgetDisplayAttribute
()
src/figtree/treeviewer/painters/LabelPainter.java:58
↓ 2 callersMethodgetDragRectangle
()
src/figtree/treeviewer/TreePane.java:1306
↓ 2 callersMethodgetExportJPEGGraphicAction
()
src/figtree/application/menus/FigTreeFileMenuHandler.java:45
↓ 2 callersMethodgetExportPDFAction
()
src/figtree/application/menus/FigTreeFileMenuHandler.java:46
↓ 2 callersMethodgetExportPNGGraphicAction
()
src/figtree/application/menus/FigTreeFileMenuHandler.java:44
↓ 2 callersMethodgetExportSVGGraphicAction
()
src/figtree/application/menus/FigTreeFileMenuHandler.java:47
↓ 2 callersMethodgetExportTreesAction
()
src/figtree/application/menus/FigTreeFileMenuHandler.java:40
↓ 2 callersMethodgetHueLower
()
src/figtree/treeviewer/decorators/HSBDiscreteColourDecorator.java:229
↓ 2 callersMethodgetHueUpper
()
src/figtree/treeviewer/decorators/HSBDiscreteColourDecorator.java:225
↓ 2 callersMethodgetIconWidth
()
src/figtree/ui/components/ColorWellButton.java:106
↓ 2 callersMethodgetImportColourSchemeAction
()
src/figtree/application/menus/FigTreeFileMenuHandler.java:36
↓ 2 callersMethodgetInstanceAlreadyExistsMsg
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Msg.java:103
↓ 2 callersMethodgetIntegerOption
Return the value of an integer option
src/figtree/application/Arguments.java:430
↓ 2 callersMethodgetJdkPreference
Preference for standalone JRE or JDK-private JRE
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Jre.java:192
↓ 2 callersMethodgetJreVersionErr
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Msg.java:84
↓ 2 callersMethodgetLabel
(Tree tree, Node node)
src/figtree/treeviewer/painters/BasicLabelPainter.java:85
↓ 2 callersMethodgetLabel
(Tree tree, Node node)
src/figtree/panel/SimpleLabelPainter.java:150
↓ 2 callersMethodgetLauncherErr
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Msg.java:93
↓ 2 callersMethodgetLeftoverArguments
Return any arguments leftover after the options
src/figtree/application/Arguments.java:470
↓ 2 callersMethodgetLogTextArea
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/formimpl/ConfigFormImpl.java:93
↓ 2 callersMethodgetMajorTickSpacing
()
src/figtree/treeviewer/painters/ScaleAxisPainter.java:88
↓ 2 callersMethodgetMessages
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Config.java:380
↓ 2 callersMethodgetMinorTickSpacing
()
src/figtree/treeviewer/painters/ScaleAxisPainter.java:92
↓ 2 callersMethodgetNodeBar
()
src/figtree/treeviewer/painters/NodeBarPainter.java:53
↓ 2 callersMethodgetNodeLabelPath
(Node node)
src/figtree/treeviewer/treelayouts/TreeLayoutCache.java:102
↓ 2 callersMethodgetNodeLabelPathMap
()
src/figtree/treeviewer/treelayouts/TreeLayoutCache.java:106
↓ 2 callersMethodgetNodeText
(RootedTree tree, Node node)
src/figtree/treeviewer/TreePaneRollOver.java:71
↓ 2 callersMethodgetPreferredWidth
()
src/figtree/treeviewer/painters/StatesPainter.java:61
↓ 2 callersMethodgetPreferredWidth
()
src/figtree/treeviewer/painters/CharactersPainter.java:88
↓ 2 callersMethodgetPriority
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Config.java:352
↓ 2 callersMethodgetRootLengthProportion
()
src/figtree/treeviewer/treelayouts/PolarTreeLayout.java:123
↓ 2 callersMethodgetRuntimeBits
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Jre.java:211
↓ 2 callersMethodgetSaturationLower
()
src/figtree/treeviewer/decorators/HSBDiscreteColourDecorator.java:237
↓ 2 callersMethodgetSaturationUpper
()
src/figtree/treeviewer/decorators/HSBDiscreteColourDecorator.java:233
↓ 2 callersMethodgetScaleRange
()
src/figtree/treeviewer/painters/ScaleBarPainter.java:173
↓ 2 callersMethodgetSelectedNodes
()
src/figtree/treeviewer/TreePane.java:1218
↓ 2 callersMethodgetSelectedTips
()
src/figtree/treeviewer/TreePane.java:1222
↓ 2 callersMethodgetSelectionMode
()
src/figtree/treeviewer/DefaultTreeViewer.java:608
↓ 2 callersMethodgetSelectionPaint
()
src/figtree/treeviewer/TreePane.java:437
↓ 2 callersMethodgetShapeArea
(double width)
src/figtree/treeviewer/painters/NodeShapePainter.java:243
↓ 2 callersMethodgetStartupErr
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Msg.java:65
↓ 2 callersMethodgetStatePaint
(int stateIndex)
src/figtree/treeviewer/painters/CharactersPainter.java:165
↓ 2 callersMethodgetSwingLog
(JTextArea textArea)
packaging_tools/windows/launch4j/src/net/sf/launch4j/Log.java:60
↓ 2 callersMethodgetTimeScale
()
src/figtree/treeviewer/TreePane.java:167
↓ 2 callersMethodgetTree
()
src/figtree/panel/SimpleLabelPainter.java:146
↓ 2 callersMethodgetType
()
src/figtree/treeviewer/painters/ScaleBarPainter.java:154
↓ 2 callersMethodhasSelection
()
src/figtree/treeviewer/MultiPaneTreeViewer.java:252
↓ 2 callersMethodinfo
(String text)
packaging_tools/windows/launch4j/src/net/sf/launch4j/formimpl/MainFrame.java:165
↓ 2 callersMethodinitSlider
Initializes the slider by setting default properties.
src/figtree/ui/components/RangeSlider.java:68
↓ 2 callersFunctioninstalledJreSearch
packaging_tools/windows/launch4j/head_src/head.c:810
↓ 2 callersMethodintersectionOf
(boolean[] s1, boolean[] s2, boolean[] d)
src/figtree/treeviewer/Parsimony.java:246
↓ 2 callersMethodisAlignTipLabels
()
src/figtree/treeviewer/treelayouts/RectilinearTreeLayout.java:101
↓ 2 callersFunctionisLauncherPathValid
packaging_tools/windows/launch4j/head_src/head.c:415
↓ 2 callersMethodisModified
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/formimpl/ConfigFormImpl.java:89
↓ 2 callersMethodisNexus
(Reader reader)
src/figtree/application/FigTreeFrame.java:712
↓ 2 callersMethodisPropertyNull
(IValidatable bean, Binding b)
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/Bindings.java:106
↓ 2 callersMethodisRoot
(Node node)
src/figtree/treeviewer/ReRootedTree.java:574
↓ 2 callersMethodmember
(char item, char[] array)
src/figtree/ui/components/WholeNumberField.java:173
↓ 2 callersMethodmember
(char item, char[] array)
src/figtree/ui/components/RealNumberField.java:205
↓ 2 callersMethodmouseDragged
(MouseEvent mouseEvent)
src/figtree/treeviewer/TreePaneRuler.java:76
↓ 2 callersFunctionmsgBox
packaging_tools/windows/launch4j/head_src/head.c:149
↓ 2 callersMethodpaintLowerThumb
Paints the thumb for the lower value using the specified graphics object.
src/figtree/ui/components/RangeSliderUI.java:276
↓ 2 callersMethodpaintUpperThumb
Paints the thumb for the upper value using the specified graphics object.
src/figtree/ui/components/RangeSliderUI.java:305
↓ 2 callersFunctionprepare
packaging_tools/windows/launch4j/head_src/head.c:1060
↓ 2 callersMethodreadData
(Reader reader, boolean isNexus)
src/figtree/applet/FigTreeApplet.java:154
↓ 2 callersMethodreadFile
(String path)
src/figtree/webui/FigTreeWebApplication.java:80
↓ 2 callersFunctionregSearchJreSdk
packaging_tools/windows/launch4j/head_src/head.c:489
↓ 2 callersMethodresize
(WLength width, WLength height)
src/figtree/webui/TreeWidget.java:105
↓ 2 callersMethodrotateNode
(Node node)
src/figtree/treeviewer/TreePane.java:230
↓ 2 callersMethodsave
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/formimpl/MainFrame.java:202
↓ 2 callersMethodscrollPointToVisible
(Point point)
src/figtree/treeviewer/TreePane.java:1327
↓ 2 callersMethodselect
(int index)
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/JRadioButtonBinding.java:110
↓ 2 callersMethodselect
(int index)
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/JComboBoxBinding.java:99
↓ 2 callersMethodselectTipsFromSelectedNodes
()
src/figtree/treeviewer/TreePane.java:673
↓ 2 callersMethodselectionChanged
()
src/figtree/treeviewer/TreeSelectionListener.java:35
↓ 2 callersMethodselectionChanged
()
src/figtree/treeviewer/annotations/AnnotationDefinitionsDialog.java:104
↓ 2 callersMethodsetAlignTipLabels
(boolean alignTipLabels)
src/figtree/treeviewer/treelayouts/RectilinearTreeLayout.java:117
↓ 2 callersMethodsetAnnotationDefinitions
(List<AnnotationDefinition> annotations)
src/figtree/treeviewer/ExtendedTreeViewer.java:159
↓ 2 callersMethodsetAttributableItem
(Attributable item, Attributable fallbackItem)
src/figtree/treeviewer/decorators/ColourDecorator.java:215
↓ 2 callersMethodsetAttributableItem
(Attributable item)
src/figtree/treeviewer/decorators/ContinuousStrokeDecorator.java:103
↓ 2 callersMethodsetAttributes
(String attributeName, Set<? extends Attributable> items)
src/figtree/treeviewer/decorators/ContinuousScale.java:86
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