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github.com/rambaut/figtree
/ functions
Functions
2,432 in github.com/rambaut/figtree
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Functions
2,432
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Types & classes
285
↓ 2 callers
Method
exportGraphics
(GraphicFormat format, JComponent comp, OutputStream stream)
src/figtree/application/FigTreeFrame.java:1241
↓ 2 callers
Method
fireTreeChanged
()
src/figtree/treeviewer/DefaultTreeViewer.java:785
↓ 2 callers
Method
firstIndexOf
(boolean[] s1)
src/figtree/treeviewer/Parsimony.java:253
↓ 2 callers
Method
flattenName
(String name)
src/figtree/treeviewer/AttributeColourController.java:309
↓ 2 callers
Method
getAnnotationName
()
src/figtree/treeviewer/annotations/SelectAnnotationDialog.java:86
↓ 2 callers
Method
getAttributeNames
(List<String> attributeNames, Collection<? extends Tree> trees, Label
src/figtree/treeviewer/painters/AttributeComboHelper.java:147
↓ 2 callers
Method
getAttributes
()
src/figtree/panel/SimpleLabelPainter.java:320
↓ 2 callers
Method
getBranchLabelPath
(Node node)
src/figtree/treeviewer/treelayouts/TreeLayoutCache.java:94
↓ 2 callers
Method
getBranchLabelPathMap
()
src/figtree/treeviewer/treelayouts/TreeLayoutCache.java:98
↓ 2 callers
Method
getBrightnessLower
()
src/figtree/treeviewer/decorators/HSBDiscreteColourDecorator.java:245
↓ 2 callers
Method
getBrightnessUpper
()
src/figtree/treeviewer/decorators/HSBDiscreteColourDecorator.java:241
↓ 2 callers
Method
getBundledJreErr
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Msg.java:74
↓ 2 callers
Method
getCode
()
src/figtree/treeviewer/annotations/AnnotationDefinition.java:77
↓ 2 callers
Method
getColor2
()
src/figtree/treeviewer/decorators/InterpolatingColourDecorator.java:94
↓ 2 callers
Method
getColor3
()
src/figtree/treeviewer/decorators/InterpolatingColourDecorator.java:101
↓ 2 callers
Method
getColorAttribute
(Object value)
src/figtree/treeviewer/decorators/AttributableDecorator.java:174
↓ 2 callers
Method
getConsoleLog
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/Log.java:52
↓ 2 callers
Method
getCurrentTree
()
src/figtree/treeviewer/TreeViewer.java:53
↓ 2 callers
Method
getDecorator
()
src/figtree/treeviewer/ContinuousColourScaleDialog.java:218
↓ 2 callers
Method
getDisplayAttribute
()
src/figtree/treeviewer/painters/LabelPainter.java:58
↓ 2 callers
Method
getDragRectangle
()
src/figtree/treeviewer/TreePane.java:1306
↓ 2 callers
Method
getExportJPEGGraphicAction
()
src/figtree/application/menus/FigTreeFileMenuHandler.java:45
↓ 2 callers
Method
getExportPDFAction
()
src/figtree/application/menus/FigTreeFileMenuHandler.java:46
↓ 2 callers
Method
getExportPNGGraphicAction
()
src/figtree/application/menus/FigTreeFileMenuHandler.java:44
↓ 2 callers
Method
getExportSVGGraphicAction
()
src/figtree/application/menus/FigTreeFileMenuHandler.java:47
↓ 2 callers
Method
getExportTreesAction
()
src/figtree/application/menus/FigTreeFileMenuHandler.java:40
↓ 2 callers
Method
getHueLower
()
src/figtree/treeviewer/decorators/HSBDiscreteColourDecorator.java:229
↓ 2 callers
Method
getHueUpper
()
src/figtree/treeviewer/decorators/HSBDiscreteColourDecorator.java:225
↓ 2 callers
Method
getIconWidth
()
src/figtree/ui/components/ColorWellButton.java:106
↓ 2 callers
Method
getImportColourSchemeAction
()
src/figtree/application/menus/FigTreeFileMenuHandler.java:36
↓ 2 callers
Method
getInstanceAlreadyExistsMsg
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Msg.java:103
↓ 2 callers
Method
getIntegerOption
Return the value of an integer option
src/figtree/application/Arguments.java:430
↓ 2 callers
Method
getJdkPreference
Preference for standalone JRE or JDK-private JRE
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Jre.java:192
↓ 2 callers
Method
getJreVersionErr
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Msg.java:84
↓ 2 callers
Method
getLabel
(Tree tree, Node node)
src/figtree/treeviewer/painters/BasicLabelPainter.java:85
↓ 2 callers
Method
getLabel
(Tree tree, Node node)
src/figtree/panel/SimpleLabelPainter.java:150
↓ 2 callers
Method
getLauncherErr
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Msg.java:93
↓ 2 callers
Method
getLeftoverArguments
Return any arguments leftover after the options
src/figtree/application/Arguments.java:470
↓ 2 callers
Method
getLogTextArea
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/formimpl/ConfigFormImpl.java:93
↓ 2 callers
Method
getMajorTickSpacing
()
src/figtree/treeviewer/painters/ScaleAxisPainter.java:88
↓ 2 callers
Method
getMessages
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Config.java:380
↓ 2 callers
Method
getMinorTickSpacing
()
src/figtree/treeviewer/painters/ScaleAxisPainter.java:92
↓ 2 callers
Method
getNodeBar
()
src/figtree/treeviewer/painters/NodeBarPainter.java:53
↓ 2 callers
Method
getNodeLabelPath
(Node node)
src/figtree/treeviewer/treelayouts/TreeLayoutCache.java:102
↓ 2 callers
Method
getNodeLabelPathMap
()
src/figtree/treeviewer/treelayouts/TreeLayoutCache.java:106
↓ 2 callers
Method
getNodeText
(RootedTree tree, Node node)
src/figtree/treeviewer/TreePaneRollOver.java:71
↓ 2 callers
Method
getPreferredWidth
()
src/figtree/treeviewer/painters/StatesPainter.java:61
↓ 2 callers
Method
getPreferredWidth
()
src/figtree/treeviewer/painters/CharactersPainter.java:88
↓ 2 callers
Method
getPriority
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Config.java:352
↓ 2 callers
Method
getRootLengthProportion
()
src/figtree/treeviewer/treelayouts/PolarTreeLayout.java:123
↓ 2 callers
Method
getRuntimeBits
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Jre.java:211
↓ 2 callers
Method
getSaturationLower
()
src/figtree/treeviewer/decorators/HSBDiscreteColourDecorator.java:237
↓ 2 callers
Method
getSaturationUpper
()
src/figtree/treeviewer/decorators/HSBDiscreteColourDecorator.java:233
↓ 2 callers
Method
getScaleRange
()
src/figtree/treeviewer/painters/ScaleBarPainter.java:173
↓ 2 callers
Method
getSelectedNodes
()
src/figtree/treeviewer/TreePane.java:1218
↓ 2 callers
Method
getSelectedTips
()
src/figtree/treeviewer/TreePane.java:1222
↓ 2 callers
Method
getSelectionMode
()
src/figtree/treeviewer/DefaultTreeViewer.java:608
↓ 2 callers
Method
getSelectionPaint
()
src/figtree/treeviewer/TreePane.java:437
↓ 2 callers
Method
getShapeArea
(double width)
src/figtree/treeviewer/painters/NodeShapePainter.java:243
↓ 2 callers
Method
getStartupErr
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/config/Msg.java:65
↓ 2 callers
Method
getStatePaint
(int stateIndex)
src/figtree/treeviewer/painters/CharactersPainter.java:165
↓ 2 callers
Method
getSwingLog
(JTextArea textArea)
packaging_tools/windows/launch4j/src/net/sf/launch4j/Log.java:60
↓ 2 callers
Method
getTimeScale
()
src/figtree/treeviewer/TreePane.java:167
↓ 2 callers
Method
getTree
()
src/figtree/panel/SimpleLabelPainter.java:146
↓ 2 callers
Method
getType
()
src/figtree/treeviewer/painters/ScaleBarPainter.java:154
↓ 2 callers
Method
hasSelection
()
src/figtree/treeviewer/MultiPaneTreeViewer.java:252
↓ 2 callers
Method
info
(String text)
packaging_tools/windows/launch4j/src/net/sf/launch4j/formimpl/MainFrame.java:165
↓ 2 callers
Method
initSlider
Initializes the slider by setting default properties.
src/figtree/ui/components/RangeSlider.java:68
↓ 2 callers
Function
installedJreSearch
packaging_tools/windows/launch4j/head_src/head.c:810
↓ 2 callers
Method
intersectionOf
(boolean[] s1, boolean[] s2, boolean[] d)
src/figtree/treeviewer/Parsimony.java:246
↓ 2 callers
Method
isAlignTipLabels
()
src/figtree/treeviewer/treelayouts/RectilinearTreeLayout.java:101
↓ 2 callers
Function
isLauncherPathValid
packaging_tools/windows/launch4j/head_src/head.c:415
↓ 2 callers
Method
isModified
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/formimpl/ConfigFormImpl.java:89
↓ 2 callers
Method
isNexus
(Reader reader)
src/figtree/application/FigTreeFrame.java:712
↓ 2 callers
Method
isPropertyNull
(IValidatable bean, Binding b)
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/Bindings.java:106
↓ 2 callers
Method
isRoot
(Node node)
src/figtree/treeviewer/ReRootedTree.java:574
↓ 2 callers
Method
member
(char item, char[] array)
src/figtree/ui/components/WholeNumberField.java:173
↓ 2 callers
Method
member
(char item, char[] array)
src/figtree/ui/components/RealNumberField.java:205
↓ 2 callers
Method
mouseDragged
(MouseEvent mouseEvent)
src/figtree/treeviewer/TreePaneRuler.java:76
↓ 2 callers
Function
msgBox
packaging_tools/windows/launch4j/head_src/head.c:149
↓ 2 callers
Method
paintLowerThumb
Paints the thumb for the lower value using the specified graphics object.
src/figtree/ui/components/RangeSliderUI.java:276
↓ 2 callers
Method
paintUpperThumb
Paints the thumb for the upper value using the specified graphics object.
src/figtree/ui/components/RangeSliderUI.java:305
↓ 2 callers
Function
prepare
packaging_tools/windows/launch4j/head_src/head.c:1060
↓ 2 callers
Method
readData
(Reader reader, boolean isNexus)
src/figtree/applet/FigTreeApplet.java:154
↓ 2 callers
Method
readFile
(String path)
src/figtree/webui/FigTreeWebApplication.java:80
↓ 2 callers
Function
regSearchJreSdk
packaging_tools/windows/launch4j/head_src/head.c:489
↓ 2 callers
Method
resize
(WLength width, WLength height)
src/figtree/webui/TreeWidget.java:105
↓ 2 callers
Method
rotateNode
(Node node)
src/figtree/treeviewer/TreePane.java:230
↓ 2 callers
Method
save
()
packaging_tools/windows/launch4j/src/net/sf/launch4j/formimpl/MainFrame.java:202
↓ 2 callers
Method
scrollPointToVisible
(Point point)
src/figtree/treeviewer/TreePane.java:1327
↓ 2 callers
Method
select
(int index)
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/JRadioButtonBinding.java:110
↓ 2 callers
Method
select
(int index)
packaging_tools/windows/launch4j/src/net/sf/launch4j/binding/JComboBoxBinding.java:99
↓ 2 callers
Method
selectTipsFromSelectedNodes
()
src/figtree/treeviewer/TreePane.java:673
↓ 2 callers
Method
selectionChanged
()
src/figtree/treeviewer/TreeSelectionListener.java:35
↓ 2 callers
Method
selectionChanged
()
src/figtree/treeviewer/annotations/AnnotationDefinitionsDialog.java:104
↓ 2 callers
Method
setAlignTipLabels
(boolean alignTipLabels)
src/figtree/treeviewer/treelayouts/RectilinearTreeLayout.java:117
↓ 2 callers
Method
setAnnotationDefinitions
(List<AnnotationDefinition> annotations)
src/figtree/treeviewer/ExtendedTreeViewer.java:159
↓ 2 callers
Method
setAttributableItem
(Attributable item, Attributable fallbackItem)
src/figtree/treeviewer/decorators/ColourDecorator.java:215
↓ 2 callers
Method
setAttributableItem
(Attributable item)
src/figtree/treeviewer/decorators/ContinuousStrokeDecorator.java:103
↓ 2 callers
Method
setAttributes
(String attributeName, Set<? extends Attributable> items)
src/figtree/treeviewer/decorators/ContinuousScale.java:86
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