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194 symbols 498 edges 21 files 58 documented · 30%
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Core symbols most depended-on inside this repo

CoNLL_tokenizer
called by 58
biobert_ner/ops.py
softmax
called by 26
biobert_ner/ops.py
close
called by 15
biobert_ner/run_ner.py
create_initializer
called by 10
biobert_ner/modeling.py
get_shape_list
called by 9
biobert_ner/modeling.py
get_stats
called by 8
service_checker.py
get_bestplus_spans
called by 6
convert.py
preprocess
called by 5
convert.py

Shape

Function 106
Method 70
Class 18

Languages

Python100%

Modules by API surface

biobert_ner/run_ner.py36 symbols
biobert_ner/modeling.py30 symbols
biobert_ner/tokenization.py27 symbols
download.py14 symbols
server.py13 symbols
convert.py12 symbols
utils.py11 symbols
biobert_ner/ops.py9 symbols
biobert_ner/fast_predict2.py7 symbols
normalizers/gene_auxiliary_normalizer.py6 symbols
biobert_ner/utils.py6 symbols
normalize.py5 symbols

For agents

$ claude mcp add bern \
  -- python -m otcore.mcp_server <graph>

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