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github.com/derrynknife/SurPyval
/ functions
Functions
1,523 in github.com/derrynknife/SurPyval
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Functions
1,523
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Types & classes
102
Function
idfunc
(x)
surpyval/tests/univariate/parametric/test_fit.py:110
Method
iif
Instantaneous Incidence Function
surpyval/univariate/competing_risks/nonparametric/competing_risks.py:73
Method
iif
(self, x, *params)
surpyval/recurrent/parametric/crow_amsaa.py:59
Method
iif
Compute the intensity function based on the fitted model. No need to pass parameters as it uses the parameters of the fitted model.
surpyval/recurrent/parametric/parametric_recurrence.py:110
Method
iif
(self, x, *params)
surpyval/recurrent/parametric/duane.py:57
Method
iif
Instantaneous intensity function (event rate) at ``x``.
surpyval/recurrent/parametric/counting_process.py:28
Method
iif
(self, x, *params)
surpyval/recurrent/parametric/cox_lewis.py:61
Method
iif
(self, x, rate)
surpyval/recurrent/regression/hpp_proportional_intensity.py:59
Method
iif
(self, x, rate)
surpyval/recurrent/regression/nhpp_proportional_intensity.py:66
Function
init_from_bounds
(dist)
surpyval/utils/__init__.py:46
Function
interval_data
Fixture for interval censored data
surpyval/tests/utils/test_surpyval_data.py:27
Method
inv_cif
(self, N, *params)
surpyval/recurrent/parametric/crow_amsaa.py:69
Method
inv_cif
(self, N, *params)
surpyval/recurrent/parametric/duane.py:65
Method
inv_cif
Time by which ``N`` events are expected; the inverse of ``cif``.
surpyval/recurrent/parametric/counting_process.py:69
Method
inv_cif
(self, N, *params)
surpyval/recurrent/parametric/cox_lewis.py:71
Method
inv_cif
(self, cif, rate)
surpyval/recurrent/regression/hpp_proportional_intensity.py:65
Method
inv_cif
(self, cif, rate)
surpyval/recurrent/regression/nhpp_proportional_intensity.py:72
Method
jac_hess
(beta)
surpyval/univariate/regression/proportional_hazards/cox_ph.py:231
Method
kendall_tau
(self, rho)
surpyval/multivariate/parametric/copula/elliptical.py:55
Method
kendall_tau
(self)
surpyval/multivariate/parametric/copula/copula_model.py:79
Method
kendall_tau
(self, *params)
surpyval/multivariate/parametric/copula/archimedean.py:35
Method
kendall_tau
(self, theta)
surpyval/multivariate/parametric/copula/archimedean.py:89
Method
kendall_tau
(self, theta)
surpyval/multivariate/parametric/copula/archimedean.py:112
Method
kijima_i
(self, v, x, q)
surpyval/recurrent/renewal/generalized_renewal.py:73
Method
kijima_ii
(self, v, x, q)
surpyval/recurrent/renewal/generalized_renewal.py:76
Function
lfp_model
()
surpyval/tests/univariate/parametric/test_confidence_bounds.py:104
Function
load_bearing_failures
Data on the failure of bearings, from [1]_. "Cycles to Failure (millions)" is the number of cycles to failure in millions of cycles. Ref
surpyval/datasets/__init__.py:12
Function
load_bofors_steel
Returns a Pandas DataFrame containing the data of the tensile strength of Bofors Steel from [2]_. First 5 rows of the dataset: .. l
surpyval/datasets/__init__.py:52
Function
load_boston_housing
The Boston house-price data of [3]_. This is a well-known data set used in machine learning. It can be analysed with survival analysis m
surpyval/datasets/__init__.py:93
Function
load_g1_kaminskiy_krivtsov
Data on the survival of a repairable system from [4]_. References ---------- .. [4] Kaminskiy, M.P. and Krivtsov, V.V. (2010).
surpyval/datasets/__init__.py:113
Function
load_heart_transplants
Data on the survival of patients who may or may not have received a heart transplant, from [5]_. References ---------- .. [5] Cr
surpyval/datasets/__init__.py:129
Function
load_meeker_lfp
Data on failures of integrated circuits from [12]_. Very difficult for LFP calculations since the data is heavily right censored. R
surpyval/datasets/__init__.py:330
Function
load_mettas_and_zhao
Data on the survival of a repairable system from [7]_. References ---------- .. [7] Mettas, A. and Zhao, Y.Q. (2005). Mod
surpyval/datasets/__init__.py:164
Function
load_rossi_time_varying
Data on the recidivism of released prisoners from [9]_. Includes time varying covariates. References ---------- .. [9] Rossi, P
surpyval/datasets/__init__.py:250
Function
load_sae
Data on failures in automotive industry from [11]_. Features heavily (right) censored data. References ---------- .. [11] V.V.
surpyval/datasets/__init__.py:286
Function
load_tires_data
Data on the survival of tires from [10]_. References ---------- .. [10] Krivtsov, V.V., Tananko, D.E., Davis, T.P. (2002).
surpyval/datasets/__init__.py:270
Method
log_df
(self, x, alpha, beta)
surpyval/univariate/parametric/distributions/weibull.py:344
Method
log_df
(self, x, mu, sigma)
surpyval/univariate/parametric/distributions/logistic.py:268
Method
log_df
(self, x, mu, sigma)
surpyval/univariate/parametric/distributions/lognormal.py:384
Method
log_df
(self, x, mu, sigma)
surpyval/univariate/parametric/distributions/gumbel.py:290
Method
log_df
(self, x, alpha, beta)
surpyval/univariate/parametric/distributions/loglogistic.py:309
Method
log_df
r""" Calculates the log of the density function of the Gamma distribution at x. .. math:: \log f(x) = \log \left
surpyval/univariate/parametric/distributions/gamma.py:413
Method
log_df
(self, x, mu, sigma)
surpyval/univariate/parametric/distributions/normal.py:388
Method
log_df
(self, x, failure_rate)
surpyval/univariate/parametric/distributions/exponential.py:379
Method
log_df
(self, x, alpha, beta, a, b)
surpyval/univariate/parametric/distributions/beta4.py:442
Method
log_df
(self, x, sigma)
surpyval/univariate/parametric/distributions/rayleigh.py:339
Method
log_df
(self, x, alpha, beta, mu)
surpyval/univariate/parametric/distributions/expo_weibull.py:311
Method
log_df
(self, x, mu, sigma)
surpyval/univariate/parametric/distributions/gumbel_lev.py:291
Method
log_df
(self, x, Z, *params)
surpyval/univariate/regression/proportional_odds/proportional_odds_fitter.py:118
Method
log_df
(self, x, Z, *params)
surpyval/univariate/regression/proportional_hazards/proportional_hazards_fitter.py:101
Method
log_df
(self, x, Z, *params)
surpyval/univariate/regression/accelerated_life/parameter_substitution.py:161
Method
log_ff
(self, x, alpha, beta)
surpyval/univariate/parametric/distributions/weibull.py:356
Method
log_ff
(self, x, mu, sigma)
surpyval/univariate/parametric/distributions/logistic.py:276
Method
log_ff
(self, x, mu, sigma)
surpyval/univariate/parametric/distributions/lognormal.py:387
Method
log_ff
(self, x, mu, sigma)
surpyval/univariate/parametric/distributions/gumbel.py:297
Method
log_ff
(self, x, alpha, beta)
surpyval/univariate/parametric/distributions/beta.py:381
Method
log_ff
(self, x, alpha, beta)
surpyval/univariate/parametric/distributions/loglogistic.py:319
Method
log_ff
(self, x, alpha, beta)
surpyval/univariate/parametric/distributions/gamma.py:447
Method
log_ff
(self, x, mu, sigma)
surpyval/univariate/parametric/distributions/normal.py:394
Method
log_ff
(self, x, alpha, beta, a, b)
surpyval/univariate/parametric/distributions/beta4.py:450
Method
log_ff
(self, x, alpha, beta, mu)
surpyval/univariate/parametric/distributions/expo_weibull.py:321
Method
log_ff
(self, x, mu, sigma)
surpyval/univariate/parametric/distributions/gumbel_lev.py:288
Method
log_ff
(self, x, Z, *params)
surpyval/univariate/regression/proportional_odds/proportional_odds_fitter.py:108
Method
log_ff
(self, x, Z, *params)
surpyval/univariate/regression/proportional_hazards/proportional_hazards_fitter.py:107
Method
log_ff
(self, x, Z, *params)
surpyval/univariate/regression/accelerated_life/parameter_substitution.py:167
Method
log_iif
(self, x, *params)
surpyval/recurrent/parametric/crow_amsaa.py:64
Method
log_iif
(self, x, *params)
surpyval/recurrent/parametric/duane.py:60
Method
log_iif
Natural logarithm of the instantaneous intensity at ``x``.
surpyval/recurrent/parametric/counting_process.py:38
Method
log_iif
(self, x, *params)
surpyval/recurrent/parametric/cox_lewis.py:66
Method
log_like
(beta)
surpyval/univariate/regression/proportional_hazards/cox_ph.py:196
Method
log_likelihood
(self)
surpyval/recurrent/inference.py:81
Method
log_sf
(self, x, alpha, beta)
surpyval/univariate/parametric/distributions/weibull.py:353
Method
log_sf
(self, x, mu, sigma)
surpyval/univariate/parametric/distributions/logistic.py:272
Method
log_sf
(self, x, mu, sigma)
surpyval/univariate/parametric/distributions/lognormal.py:390
Method
log_sf
(self, x, mu, sigma)
surpyval/univariate/parametric/distributions/gumbel.py:294
Method
log_sf
(self, x, alpha, beta)
surpyval/univariate/parametric/distributions/loglogistic.py:316
Method
log_sf
(self, x, mu, sigma)
surpyval/univariate/parametric/distributions/normal.py:391
Method
log_sf
(self, x, failure_rate)
surpyval/univariate/parametric/distributions/exponential.py:382
Method
log_sf
(self, x, sigma)
surpyval/univariate/parametric/distributions/rayleigh.py:342
Method
log_sf
(self, x, alpha, beta, mu)
surpyval/univariate/parametric/distributions/expo_weibull.py:324
Method
log_sf
(self, x, mu, sigma)
surpyval/univariate/parametric/distributions/gumbel_lev.py:285
Method
log_sf
(self, x, Z, *params)
surpyval/univariate/regression/proportional_odds/proportional_odds_fitter.py:98
Method
log_sf
(self, x, Z, *params)
surpyval/univariate/regression/proportional_hazards/proportional_hazards_fitter.py:104
Method
log_sf
(self, x, Z, *params)
surpyval/univariate/regression/accelerated_life/parameter_substitution.py:164
Function
logrank
r""" The k-sample (weighted) log-rank test for the equality of survival distributions of right censored data. At each distinct event time
surpyval/univariate/nonparametric/logrank.py:42
Method
mcf
(self, x, interp="step")
surpyval/recurrent/nonparametric/mcf.py:14
Method
mcf
The mean cumulative function (MCF). For these counting processes the MCF equals the cumulative intensity, so this is a closed-form al
surpyval/recurrent/parametric/parametric_recurrence.py:90
Method
mcf
Cause-specific MCF evaluated at ``x`` for the given ``cause``.
surpyval/recurrent/competing_risks/nonparametric/cause_specific_mcf.py:52
Method
mcf
Estimate the mean cumulative function at ``x`` for covariates ``Z`` by simulating ``items`` time-terminated sequences out to ``max(x)
surpyval/recurrent/regression/proportional_intensity.py:257
Method
mcf_cb
Confidence bounds on the cause-specific MCF for ``cause``.
surpyval/recurrent/competing_risks/nonparametric/cause_specific_mcf.py:56
Method
mean
(self)
surpyval/univariate/parametric/mixture_model.py:229
Method
mean
r""" Mean of the Weibull distribution .. math:: E = \alpha \Gamma \left ( 1 + \frac{1}{\beta} \right ) Paramete
surpyval/univariate/parametric/distributions/weibull.py:279
Method
mean
r""" Mean of the Logistic distribution .. math:: E = \mu Parameters ---------- mu : numpy arra
surpyval/univariate/parametric/distributions/logistic.py:238
Method
mean
r""" Mean of the LogNormal Distribution: .. math:: E = e^{\mu + \frac{\sigma^2}{2}} Parameters --------
surpyval/univariate/parametric/distributions/lognormal.py:292
Method
mean
r""" Calculates the mean of the Gumbel distribution with given parameters. .. math:: E = \mu - \sigma\gamma Whe
surpyval/univariate/parametric/distributions/gumbel.py:256
Method
mean
r""" Mean of the LogLogistic distribution .. math:: E = \frac{\alpha \pi / \beta}{sin \left ( \pi / \beta \right )}
surpyval/univariate/parametric/distributions/loglogistic.py:276
Method
mean
r""" Calculates the mean of the Gamma distribution with given parameters. .. math:: E = \frac{\alpha}{\beta} Pa
surpyval/univariate/parametric/distributions/gamma.py:310
Method
mean
r""" Mean of the Normal distribution .. math:: E = \mu Parameters ---------- mu : numpy array
surpyval/univariate/parametric/distributions/normal.py:296
Method
mean
r""" Mean of the Binomial distribution: .. math:: E[X] = n p Examples -------- >>> from surpyva
surpyval/univariate/parametric/distributions/binomial.py:253
Method
mean
(self, alpha, beta, mu)
surpyval/univariate/parametric/distributions/expo_weibull.py:327
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