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Functions1,523 in github.com/derrynknife/SurPyval

Methodff
r""" Failure (CDF or unreliability) function for the Rayleigh Distribution: .. math:: F(x) = 1 - e^{-\frac{x^2}{
surpyval/univariate/parametric/distributions/rayleigh.py:83
Methodff
r""" Failure (CDF or unreliability) function for the ExpoWeibull Distribution: .. math:: F(x) = \left [ 1 - e^{-
surpyval/univariate/parametric/distributions/expo_weibull.py:82
Methodff
A lot of commentary about this being difficult to interpret. In engineering this is not the case, eliminating the failure wil
surpyval/univariate/competing_risks/nonparametric/competing_risks.py:62
Methodff
(self, x, Z, event=None, interp="step")
surpyval/univariate/competing_risks/regression/competing_risks_proportional_hazard.py:45
Methodff
r""" The cumulative distribution function, or failure function, for a distribution using the parameters found in the ``.params`` attri
surpyval/univariate/regression/parametric_regression_model.py:164
Methodff
( self, x: npt.ArrayLike, Z: "npt.ArrayLike | pd.DataFrame" )
surpyval/univariate/regression/semi_parametric_regression_model.py:84
Methodff
(self, x, Z, *params)
surpyval/univariate/regression/proportional_odds/proportional_odds_fitter.py:62
Methodff
( self, x: int | float | ArrayLike, Z: ArrayLike | NDArray )
surpyval/experimental/forest/tree.py:99
Methodff
( self, x: int | float | ArrayLike, Z: ArrayLike | NDArray )
surpyval/experimental/forest/forest.py:129
Functionfilliben
Method From: Filliben, J. J. (February 1975), "The Probability Plot Correlation Coefficient Test for Normality", Technometrics, Ameri
surpyval/univariate/nonparametric/filliben.py:7
Methodfine_gray_risk_set_indices
(cls, x_i, e_i, x, e)
surpyval/univariate/competing_risks/regression/competing_risks_proportional_hazard.py:72
Methodfit
r""" The central feature to SurPyval's capability. This function aimed to have an API to mimic the simplicity of the scipy API. That
surpyval/univariate/nonparametric/nonparametric_fitter.py:49
Methodfit
(self, x, n=None)
surpyval/univariate/parametric/distributions/bernoulli.py:142
Methodfit
(self, x, c=None, n=None, t=None)
surpyval/univariate/parametric/distributions/exact_event_time.py:46
Methodfit
r""" This function aimed to have an API to mimic the simplicity of the scipy API. That is, to use a simple :code:`fit()` call,
surpyval/univariate/competing_risks/regression/competing_risks_proportional_hazard.py:136
Methodfit
(self, x, Z, e, c=None, n=None)
surpyval/univariate/competing_risks/regression/fine_gray.py:122
Methodfit
( self, x: npt.ArrayLike, Z: npt.ArrayLike, c: npt.ArrayLike | None = None,
surpyval/univariate/regression/proportional_odds/proportional_odds_fitter.py:133
Methodfit
( self, x: npt.ArrayLike, Z: npt.ArrayLike, c: npt.ArrayLike | None = None,
surpyval/univariate/regression/accelerated_failure_time/aft_fitter.py:92
Methodfit
( self, x: npt.ArrayLike, Z: npt.ArrayLike, c: npt.ArrayLike | None = None,
surpyval/univariate/regression/accelerated_failure_time/accelerated_failure_time.py:108
Methodfit
Fit the proportional hazards model to the data. Parameters ---------- x : array_like The observed event
surpyval/univariate/regression/proportional_hazards/proportional_hazards_fitter.py:156
Methodfit
( self, x: npt.ArrayLike, Z: npt.ArrayLike, c: npt.ArrayLike | None = None,
surpyval/univariate/regression/accelerated_life/parameter_substitution.py:202
Methodfit
Fit a nonparametric (Nelson-Aalen) MCF. Parameters ---------- x : array like Event (and censoring) times
surpyval/recurrent/nonparametric/mcf.py:138
Methodfit
Fits the HPP model to the provided data and returns the fitted model. Parameters ---------- x : array_like
surpyval/recurrent/parametric/hpp.py:290
Methodfit
Fit the NHPP model from the provided data. This function prepares the data to ensure that it is in the correct format for the fitting
surpyval/recurrent/parametric/nhpp_fitter.py:175
Methodfit
Fit a cause-specific MCF. Parameters ---------- x : array like Event (and censoring) times. i :
surpyval/recurrent/competing_risks/nonparametric/cause_specific_mcf.py:89
Methodfit
Fit the model using the provided data and initial parameters (if given) Parameters ---------- x : array_like
surpyval/recurrent/regression/hpp_proportional_intensity.py:205
Methodfit
Fit the model using the provided data and initial parameters. Parameters ---------- x : array_like Inpu
surpyval/recurrent/regression/nhpp_proportional_intensity.py:238
Methodfit
Fit the generalized renewal model. Parameters ---------- x : array_like An array of event times.
surpyval/recurrent/renewal/generalized_renewal.py:253
Methodfit
Fit the ARI model. Parameters ---------- x : array_like An array of event times. i : array_like
surpyval/recurrent/renewal/ari.py:235
Methodfit
( cls, x: ArrayLike, Z: ArrayLike | NDArray, c: ArrayLike, n: ArrayLik
surpyval/experimental/forest/forest.py:69
Methodfit
( self, x, c=None, n=None, t=None, margins=None, how="
surpyval/multivariate/parametric/copula/archimedean.py:41
Functionfit_best
( x: npt.ArrayLike, c: npt.ArrayLike | None = None, n: npt.ArrayLike | None = None, t: npt.Arr
surpyval/fit_best.py:44
Methodfit_from_df
( cls, df, x_col, e_col, c_col=None, n_col=None, method="Nelson-Aalen" )
surpyval/univariate/competing_risks/nonparametric/competing_risks.py:89
Methodfit_from_df
(self, *args, **kwargs)
surpyval/univariate/competing_risks/regression/competing_risks_proportional_hazard.py:131
Methodfit_from_df
Fit the regression model using a pandas DataFrame as the input. The names of the covariates are retained on the fitted model so that
surpyval/univariate/regression/regression_data.py:147
Methodfit_from_df
Fits a Cox PH model using a pandas dataframe as the input. Parameters ---------- df: pandas.DataFrame T
surpyval/univariate/regression/proportional_hazards/cox_ph.py:507
Methodfit_from_non_parametric
(self, non_parametric_model)
surpyval/univariate/parametric/parametric_fitter.py:773
Methodfit_from_parameters
Fit the generalized renewal model from given parameters. Parameters ---------- params : list A list of
surpyval/recurrent/renewal/generalized_renewal.py:309
Methodfit_from_parameters
Fit the generalized renewal model from given parameters. Parameters ---------- params : list A list of
surpyval/recurrent/renewal/generalized_one_renewal.py:263
Methodfit_from_parameters
Build an ARI model from given parameters. Parameters ---------- dist_params : list Parameters for the b
surpyval/recurrent/renewal/ari.py:267
Methodfit_once
(x0)
surpyval/recurrent/renewal/ara.py:183
Methodfit_once
(x0)
surpyval/recurrent/renewal/generalized_renewal.py:231
Methodfit_once
(x0)
surpyval/recurrent/renewal/generalized_one_renewal.py:190
Methodfit_once
(x0)
surpyval/recurrent/renewal/ari.py:189
Functionfixed_seed
()
surpyval/tests/univariate/parametric/test_distributions_math.py:65
Functionfleming_harrington_variance
Variance of the Fleming-Harrington cumulative hazard estimator using the same tie correction as the estimator itself: Var(H) = sum(sum(1
surpyval/univariate/nonparametric/fleming_harrington.py:31
Methodfrom_json
(cls, fp: str | Path)
surpyval/univariate/parametric/parametric.py:122
Methodfrom_params
r""" Creating a SurPyval Parametric class with provided parameters. Parameters ---------- params : array like
surpyval/univariate/parametric/parametric_fitter.py:1035
Methodfrom_params
(self, p)
surpyval/univariate/parametric/distributions/bernoulli.py:154
Methodfrom_params
(self, T)
surpyval/univariate/parametric/distributions/exact_event_time.py:71
Methodfrom_params
r""" Create a Binomial model from the parameters ``[n, p]``. Parameters ---------- params : array like
surpyval/univariate/parametric/distributions/binomial.py:396
Functionfs_to_xrd
Converts the fs format to the xrd format. Parameters ---------- f: array array of values for which the failure/death was obs
surpyval/utils/__init__.py:1330
Functionfun
(gamma)
surpyval/univariate/parametric/fitters/mpp.py:98
Methodfun
(x)
surpyval/univariate/parametric/parametric_fitter.py:279
Methodfun
(a)
surpyval/univariate/parametric/distributions/gamma.py:509
Methodfun
(params)
surpyval/univariate/regression/proportional_odds/proportional_odds_fitter.py:173
Methodfun
(params)
surpyval/univariate/regression/accelerated_failure_time/aft_fitter.py:132
Methodfun
(params)
surpyval/univariate/regression/accelerated_failure_time/accelerated_failure_time.py:192
Methodfun
(params)
surpyval/univariate/regression/proportional_hazards/proportional_hazards_fitter.py:294
Methodfun
(params)
surpyval/univariate/regression/accelerated_life/parameter_substitution.py:306
Methodfun
(params)
surpyval/recurrent/parametric/nhpp_fitter.py:138
Methodfunc
(phi)
surpyval/univariate/parametric/parametric.py:956
Methodfunc
(x)
surpyval/univariate/parametric/distributions/expo_weibull.py:328
Methodg
(x)
surpyval/recurrent/renewal/ari.py:88
Functiongammainc
(a, x)
surpyval/utils/autograd_gamma_compat.py:78
Functiongammainccln
(a, x)
surpyval/utils/autograd_gamma_compat.py:127
Functiongammaincln
(a, x)
surpyval/utils/autograd_gamma_compat.py:103
Methodgap
(theta)
surpyval/multivariate/parametric/copula/archimedean.py:146
Functiongenerate_mle_test_cases
()
surpyval/tests/univariate/parametric/test_fit.py:57
Functiongenerate_mom_test_cases
()
surpyval/tests/univariate/parametric/test_fit.py:84
Functiongenerate_mpp_test_cases
()
surpyval/tests/univariate/parametric/test_fit.py:77
Functiongenerate_mps_test_cases
()
surpyval/tests/univariate/parametric/test_fit.py:90
Functiongenerate_mps_trunc_test_cases
()
surpyval/tests/univariate/parametric/test_fit.py:96
Functiongenerate_mse_test_cases
()
surpyval/tests/univariate/parametric/test_fit.py:104
Functiongenerate_small_mle_test_cases
()
surpyval/tests/univariate/parametric/test_fit.py:70
Methodget_events_for_item
Get all events for a specific item or subject. Parameters ---------- item : int or str The id of the ite
surpyval/utils/recurrent_event_data.py:302
Functionget_x_Z_c_samples
()
surpyval/tests/experimental/forest/test_forest.py:10
Functiongreenwood_variance
Greenwood's formula for the variance of the cumulative hazard (equivalently, of -log(R)) of the Kaplan-Meier estimator: Var(H) = sum(d /
surpyval/univariate/nonparametric/kaplan_meier.py:8
Functiongumbel_model
()
surpyval/tests/univariate/parametric/test_confidence_bounds.py:14
Methodhf
r""" Instantaneous hazard rate for the Weibull Distribution: .. math:: h(x) = \frac{\beta}{\alpha} \left ( \frac{x}{\alp
surpyval/univariate/parametric/distributions/weibull.py:175
Methodhf
r""" Instantaneous hazard rate for the Logistic Distribution: .. math:: h(x) = \\frac{f(x)}{R(x)} Parameters
surpyval/univariate/parametric/distributions/logistic.py:136
Methodhf
r""" Instantaneous hazard rate for the LogNormal Distribution: .. math:: h(x) = \frac{f(x)}{R(x)} Parameters
surpyval/univariate/parametric/distributions/lognormal.py:189
Methodhf
r""" Instantaneous hazard rate for the Uniform Distribution: .. math:: h(x) = \frac{1}{b - x} Parameters
surpyval/univariate/parametric/distributions/uniform.py:169
Methodhf
r""" Instantaneous hazard rate for the Gumbel Distribution: .. math:: h(x) = \frac{1}{\sigma} e^{\frac{x-\mu}{\sigma}}
surpyval/univariate/parametric/distributions/gumbel.py:148
Methodhf
r""" Instantaneous hazard rate for the Beta distribution. .. math:: h(x) = \frac{f(x)}{R(x)} Parameters
surpyval/univariate/parametric/distributions/beta.py:171
Methodhf
r""" Instantaneous hazard rate for the LogLogistic Distribution: .. math:: h(x) = \frac{f(x)}{R(x)} Parameters
surpyval/univariate/parametric/distributions/loglogistic.py:174
Methodhf
r""" Instantaneous hazard rate for the Gamma Distribution: .. math:: h(x) = \frac{\frac{\beta^{\alpha }}{\Gamma \left (
surpyval/univariate/parametric/distributions/gamma.py:203
Methodhf
r""" Instantaneous hazard rate for the Normal Distribution: .. math:: h(x) = \frac{\frac{1}{\sigma \sqrt{2\pi}}e^{-\frac
surpyval/univariate/parametric/distributions/normal.py:191
Methodhf
r""" Discrete hazard rate for the Binomial distribution; the conditional probability of exactly ``x`` events given at least ``x``:
surpyval/univariate/parametric/distributions/binomial.py:138
Methodhf
r""" Instantaneous hazard rate for the Exponential Distribution. .. math:: f(x) = \lambda The failure rate for
surpyval/univariate/parametric/distributions/exponential.py:190
Methodhf
r""" Instantaneous hazard rate for the four-parameter Beta distribution. .. math:: h(x) = \frac{f(x)}{R(x)}
surpyval/univariate/parametric/distributions/beta4.py:233
Methodhf
r""" Instantaneous hazard rate for the Rayleigh Distribution: .. math:: h(x) = \frac{x}{\sigma^2} Parameters
surpyval/univariate/parametric/distributions/rayleigh.py:182
Methodhf
r""" Instantaneous hazard rate for the ExpoWeibull Distribution: .. math:: h(x) = \frac{f(x)}{R(x)} Parameters
surpyval/univariate/parametric/distributions/expo_weibull.py:202
Methodhf
r""" Instantaneous hazard rate for the Gumbel LEV Distribution: .. math:: h(x) = \frac{f(x)}{R(x)} Parameters
surpyval/univariate/parametric/distributions/gumbel_lev.py:146
Methodhf
r""" The instantaneous hazard function for a distribution using the parameters found in the ``.params`` attribute. Parameters
surpyval/univariate/regression/parametric_regression_model.py:242
Methodhf
(self, x, Z, *params)
surpyval/univariate/regression/proportional_odds/proportional_odds_fitter.py:72
Methodhf
(self, x)
surpyval/experimental/parallel.py:40
Methodhf
( self, x: int | float | ArrayLike, Z: ArrayLike | NDArray )
surpyval/experimental/forest/tree.py:109
Methodhf
( self, x: int | float | ArrayLike, Z: ArrayLike | NDArray )
surpyval/experimental/forest/forest.py:139
Functionhf_func
(params)
surpyval/tests/univariate/parametric/test_confidence_bounds.py:89
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