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Functions1,523 in github.com/derrynknife/SurPyval

↓ 1 callersMethodlog_ff
(self, x, Z, *params)
surpyval/univariate/regression/accelerated_failure_time/accelerated_failure_time.py:79
↓ 1 callersFunctionlog_rank
Returns L(u, v).
surpyval/experimental/forest/log_rank_split.py:109
↓ 1 callersMethodlog_sf
(self, x, *params)
surpyval/univariate/parametric/parametric_fitter.py:140
↓ 1 callersMethodlog_sf
(self, x, Z, *params)
surpyval/univariate/regression/accelerated_failure_time/aft_fitter.py:80
↓ 1 callersMethodlog_sf
(self, x, Z, *params)
surpyval/univariate/regression/accelerated_failure_time/accelerated_failure_time.py:76
↓ 1 callersMethodmaximisation
(self)
surpyval/univariate/parametric/mixture_model.py:105
↓ 1 callersMethodmean
r""" The (restricted) mean survival time: the area under the estimated survival function from 0 to tau. If the survival funct
surpyval/univariate/nonparametric/nonparametric.py:605
↓ 1 callersMethodmean
r""" Calculates the mean of the Exponential distribution with given parameters. .. math:: E = \frac{1}{\lambda}
surpyval/univariate/parametric/distributions/exponential.py:292
↓ 1 callersMethodmean
r""" Mean of the four-parameter Beta distribution .. math:: E = a + \left(b - a\right)\frac{\alpha}{\alpha + \beta}
surpyval/univariate/parametric/distributions/beta4.py:332
↓ 1 callersMethodmle
(self, data)
surpyval/univariate/parametric/distributions/uniform.py:369
↓ 1 callersMethodmom_moment_gen
(self, *params, offset=False)
surpyval/univariate/parametric/parametric_fitter.py:294
↓ 1 callersMethodmortality
( self, x: int | float | ArrayLike, Z: ArrayLike | NDArray )
surpyval/experimental/forest/forest.py:149
↓ 1 callersMethodmpp
( self, x, c=None, n=None, heuristic="Nelson-Aalen", rr="y",
surpyval/univariate/parametric/distributions/beta.py:393
↓ 1 callersFunctionmpp_from_ecfd
(dist, x, F)
surpyval/univariate/parametric/fitters/mpp.py:10
↓ 1 callersMethodmpp_x_transform
(self, x)
surpyval/univariate/parametric/distributions/rayleigh.py:394
↓ 1 callersMethodmpp_y_transform
(self, y, *params)
surpyval/univariate/parametric/distributions/exponential.py:388
↓ 1 callersMethodmpp_y_transform
(self, y, *params)
surpyval/univariate/parametric/distributions/rayleigh.py:400
↓ 1 callersMethodneg_ll
(self, data, *params)
surpyval/univariate/regression/proportional_odds/proportional_odds_fitter.py:130
↓ 1 callersMethodneg_ll
(self, data, *params)
surpyval/univariate/regression/accelerated_failure_time/aft_fitter.py:89
↓ 1 callersMethodneg_ll
(self, Z, x, c, n, *params)
surpyval/univariate/regression/accelerated_failure_time/accelerated_failure_time.py:82
↓ 1 callersMethodneg_ll
(self, data, *params)
surpyval/univariate/regression/proportional_hazards/proportional_hazards_fitter.py:118
↓ 1 callersMethodneg_ll
(self, data, *params)
surpyval/univariate/regression/accelerated_life/parameter_substitution.py:199
↓ 1 callersMethodneg_mean_D
(self, x, c, n, tl, tr, *params)
surpyval/univariate/parametric/parametric_fitter.py:228
↓ 1 callersFunctionnumerical_hessian
Central finite-difference Hessian of a scalar ``func`` at ``x``. Used to approximate the observed Fisher information from the negative lo
surpyval/recurrent/inference.py:6
↓ 1 callersFunctionnumpy_fill
(arr)
surpyval/experimental/forest/log_rank_split.py:10
↓ 1 callersFunctionparse_leaf_type
(leaf_type: str)
surpyval/experimental/forest/forest.py:190
↓ 1 callersFunctionparse_n_features_split
( n_features_split: int | float | str, n_features: int )
surpyval/experimental/forest/tree.py:120
↓ 1 callersMethodqf
r""" Quantile function of the non-parametric estimate. Returns the smallest observed value at which the estimated CDF reaches, or
surpyval/univariate/nonparametric/nonparametric.py:492
↓ 1 callersMethodqf
r""" Quantile function for the LogNormal Distribution: .. math:: q(p) = e^{\mu + \sigma \Phi^{-1} \left( p \right )}
surpyval/univariate/parametric/distributions/lognormal.py:257
↓ 1 callersMethodqf
r""" Quantile function for the Beta Distribution: Parameters ---------- p : numpy array or scalar The p
surpyval/univariate/parametric/distributions/beta.py:239
↓ 1 callersMethodqf
r""" Quantile function for the Normal Distribution: .. math:: q(p) = \Phi^{-1} \left( p \right ) Parameters
surpyval/univariate/parametric/distributions/normal.py:262
↓ 1 callersMethodqf
r""" Quantile function for the four-parameter Beta distribution: .. math:: q(p) = a + \left(b - a\right) I^{-1}_{p}\left
surpyval/univariate/parametric/distributions/beta4.py:294
↓ 1 callersFunctionrank_adjust
Currently limited to only Mean Order Number Room to expand to: Modal Order Number, and Median Order Number Uses mean order statis
surpyval/univariate/nonparametric/rank_adjust.py:4
↓ 1 callersFunctionrev_adj_relu
(x)
surpyval/univariate/parametric/fitters/__init__.py:48
↓ 1 callersFunctionround_sig
(points, sig=2)
surpyval/utils/__init__.py:23
↓ 1 callersFunctionscore
( x: ArrayLike, c: ArrayLike, scores: ArrayLike, tie_tol: float = 1e-8, )
surpyval/utils/score.py:9
↓ 1 callersMethodsf
(self, x: ArrayLike, *args, **kwargs)
surpyval/distribution.py:27
↓ 1 callersMethodsf
(cls, x)
surpyval/univariate/parametric/__init__.py:48
↓ 1 callersMethodsf
r""" Survival (or Reliability) function for the Exponential Distribution: .. math:: R(x) = e^{-\lambda x} Param
surpyval/univariate/parametric/distributions/exponential.py:50
↓ 1 callersMethodsf
(self, x, event=None)
surpyval/univariate/competing_risks/nonparametric/competing_risks.py:59
↓ 1 callersMethodsf
r""" Surival (or Reliability) function for a distribution using the parameters found in the ``.params`` attribute. Parameters
surpyval/univariate/regression/parametric_regression_model.py:126
↓ 1 callersMethodsf
( self, x: npt.ArrayLike, Z: "npt.ArrayLike | pd.DataFrame" )
surpyval/univariate/regression/semi_parametric_regression_model.py:79
↓ 1 callersMethodsf
(self, x, Z, *params)
surpyval/univariate/regression/proportional_odds/proportional_odds_fitter.py:52
↓ 1 callersMethodsf
(self, x, Z, *params)
surpyval/univariate/regression/accelerated_failure_time/aft_fitter.py:71
↓ 1 callersMethodsf
(self, x)
surpyval/experimental/parallel.py:32
↓ 1 callersMethodtime_terminated_simulation
Simulate time-terminated recurrence data based on the fitted model. Parameters ---------- T: float Time
surpyval/recurrent/regression/proportional_intensity.py:191
↓ 1 callersFunctiontruncation_correction
Log of the probability mass within each observation's truncation interval, summed over the truncated rows. The likelihood of a truncated obse
surpyval/univariate/regression/_likelihood.py:43
↓ 1 callersFunctionvalidate_coxph
( x, c, n, Z, tl, method )
surpyval/utils/__init__.py:1291
↓ 1 callersFunctionvalidate_coxph_df_inputs
(df, x_col, c_col, n_col, Z_cols, formula)
surpyval/utils/__init__.py:1267
↓ 1 callersFunctionvalidate_cr_df_inputs
(df, x_col, e_col, c_col=None, n_col=None)
surpyval/utils/__init__.py:1092
↓ 1 callersFunctionvalidate_cr_inputs
(x, c, n, e, method)
surpyval/utils/__init__.py:1108
↓ 1 callersFunctionvalidate_event
(mapping, event)
surpyval/utils/__init__.py:1143
↓ 1 callersFunctionvalidate_fine_gray_inputs
(x, Z, e, c, n)
surpyval/utils/__init__.py:1312
MethodHf
(self, x: ArrayLike, *args, **kwargs)
surpyval/distribution.py:32
MethodHf
(cls, x)
surpyval/univariate/parametric/__init__.py:74
MethodHf
The cumulative hazard function for a distribution using the parameters found in the ``.params`` attribute. Parameters
surpyval/univariate/parametric/parametric.py:476
MethodHf
r""" Cumulative hazard rate for the Weibull Distribution: .. math:: h(x) = \frac{x}{\alpha}^{\beta} Parameters
surpyval/univariate/parametric/distributions/weibull.py:210
MethodHf
r""" Cumulative hazard rate for the Logistic distribution: .. math:: H(x) = -\\ln \\left( R(x) \\right) Paramet
surpyval/univariate/parametric/distributions/logistic.py:170
MethodHf
r""" Cumulative hazard rate for the LogNormal Distribution: .. math:: H(x) = -\ln \left ( R(x) \right ) Paramet
surpyval/univariate/parametric/distributions/lognormal.py:223
MethodHf
r""" Instantaneous hazard rate for the Uniform Distribution: .. math:: H(x) = \ln \left ( b - a \right ) - \ln \left ( b
surpyval/univariate/parametric/distributions/uniform.py:203
MethodHf
(self, x, T)
surpyval/univariate/parametric/distributions/exact_event_time.py:40
MethodHf
r""" Cumulative hazard rate for the LogLogistic Distribution: .. math:: H(x) = -\ln \left ( R(x) \right ) Param
surpyval/univariate/parametric/distributions/loglogistic.py:208
MethodHf
r""" Cumulative hazard rate for the Gamma Distribution: .. math:: H(x) = -\ln(1 - \frac{\gamma \left ( \alpha, \beta x \
surpyval/univariate/parametric/distributions/gamma.py:240
MethodHf
r""" Cumulative hazard rate for the Normal Distribution: .. math:: H(x) = -\ln \left( 1 - \Phi \left( \frac{x - \mu}{\si
surpyval/univariate/parametric/distributions/normal.py:227
MethodHf
r""" Cumulative hazard function for the Binomial distribution: .. math:: H(x) = -\ln R(x) Parameters --
surpyval/univariate/parametric/distributions/binomial.py:168
MethodHf
r""" Cumulative hazard rate for the Exponential Distribution. .. math:: f(x) = \lambda x Parameters ---
surpyval/univariate/parametric/distributions/exponential.py:226
MethodHf
r""" Cumulative hazard rate for the four-parameter Beta distribution. .. math:: H(x) = -\ln\left(R(x)\right) Pa
surpyval/univariate/parametric/distributions/beta4.py:264
MethodHf
r""" Cumulative hazard rate for the Rayleigh Distribution: .. math:: H(x) = \frac{x^2}{2\sigma^2} Parameters
surpyval/univariate/parametric/distributions/rayleigh.py:214
MethodHf
r""" Instantaneous hazard rate for the ExpoWeibull Distribution: .. math:: H(x) = -\ln \left ( R(x) \right ) Pa
surpyval/univariate/parametric/distributions/expo_weibull.py:238
MethodHf
r""" The cumulative hazard function for a distribution using the parameters found in the ``.params`` attribute. Parameters
surpyval/univariate/regression/parametric_regression_model.py:282
MethodHf
(self, x, Z, *params)
surpyval/univariate/regression/proportional_odds/proportional_odds_fitter.py:83
MethodHf
(self, x)
surpyval/experimental/parallel.py:44
MethodHf
( self, x: int | float | ArrayLike, Z: ArrayLike | NDArray )
surpyval/experimental/forest/tree.py:114
FunctionPH
Create a Proportional Hazards fitter for the given distribution. Uses exp(beta'Z) as the hazard multiplier — the standard parameterisation
surpyval/univariate/regression/proportional_hazards/__init__.py:15
MethodQ
(self, params)
surpyval/univariate/parametric/mixture_model.py:87
Method__and__
(self, other)
surpyval/experimental/series.py:17
Method__and__
(self, other)
surpyval/experimental/parallel.py:16
Method__getitem__
(self, index)
surpyval/utils/surpyval_data.py:210
Method__getitem__
(self, index)
surpyval/utils/recurrent_event_data.py:339
Method__init__
Initialize a SurpyvalData instance for survival analysis. Validates, sorts, and stores survival data in the xcnt format. Supports unc
surpyval/utils/surpyval_data.py:13
Method__init__
(self, x, i, c, n, e=None, tl=None, tr=None)
surpyval/utils/recurrent_event_data.py:44
Method__init__
(self)
surpyval/univariate/nonparametric/kaplan_meier.py:65
Method__init__
(self)
surpyval/univariate/nonparametric/fleming_harrington.py:86
Method__init__
(self)
surpyval/univariate/nonparametric/nelson_aalen.py:60
Method__init__
(self)
surpyval/univariate/nonparametric/turnbull.py:173
Method__init__
(self, statistic, dof, p_value, weighting)
surpyval/univariate/nonparametric/logrank.py:25
Method__init__
(self, dist, m=2)
surpyval/univariate/parametric/mixture_model.py:39
Method__init__
( self, name: str, k: int, bounds: tuple[tuple[int | float | None, int | float
surpyval/univariate/parametric/parametric_fitter.py:78
Method__init__
( self, dist: Any, method: str, data: Any, offset: bool, lfp:
surpyval/univariate/parametric/parametric.py:67
Method__init__
(self, name)
surpyval/univariate/parametric/distributions/weibull.py:8
Method__init__
(self, name)
surpyval/univariate/parametric/distributions/logistic.py:8
Method__init__
(self, name)
surpyval/univariate/parametric/distributions/bernoulli.py:10
Method__init__
(self, name)
surpyval/univariate/parametric/distributions/lognormal.py:10
Method__init__
(self, name)
surpyval/univariate/parametric/distributions/uniform.py:6
Method__init__
(self, name)
surpyval/univariate/parametric/distributions/exact_event_time.py:9
Method__init__
(self, name)
surpyval/univariate/parametric/distributions/gumbel.py:9
Method__init__
(self, name)
surpyval/univariate/parametric/distributions/beta.py:11
Method__init__
(self, name)
surpyval/univariate/parametric/distributions/loglogistic.py:9
Method__init__
(self, name)
surpyval/univariate/parametric/distributions/gamma.py:28
Method__init__
(self, name, fun, param_names, bounds, support)
surpyval/univariate/parametric/distributions/custom_distribution.py:58
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